XM_017371456.1

Resource Type: 
Polypeptide
Name: 
XM_017371456.1
Identifier: 
XM_017371456.1-protein
Sequence: 
MSPATKSKSKSKEKPLTKATKELQKASQKYPESNNGSTPASAYNPLSGTF
HSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCS
GESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQEL
HERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFE
GTEQESQTKDIGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCE
GDLDKAEETLNSQKPEPITHPKPEESASLKHAMMHQEKPTSAVTTLLNRN
EGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSY
SSTGPIQVASSSAKVMAQLGVGLEGRPFHQGAAIKEPIVMMQRPQSINIK
PSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHF
YPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSP
VGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSID
WTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMHSTNGVRVAGLQDGGPTE
ATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP
Sequence Length: 
632
Sequence Checksum: 
432a72275065c6436eb30cfea1b1ec4f
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017371456.1, derives from mRNA, XM_017371456.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B965 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 405/649 (62.40%), Postives = 484/649 (74.58%), Query Frame = 0
 
Query:    1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNN--GSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKDIGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRV-SGNYNSSLSYSSTGPIQVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTG---SQHFYPQSQS-RNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGT-----SSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMH--STNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            MSPA+KSKSKSK+K   +A KE QKAS K   S N    +PASAYNP+SGTFH+LD+A  +S PPL +NGRFRNIEETD+HSG+ H TA EYDSLSNN SCSGESEDHKEK  +T  R + +  SDN+KREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLE LSQQ++AMGF+SERAT+ALMLNEGR++ESV+WLFEG+E E+Q KD+GS ANLKIDI+EE+ARI  MEV +KCSKQEVER V++CEGDL+KAEETL +QKPE P+T  + EE+ + KH +  +EKPT +VT    +NE +  Y +GA    T P +G+RN  S K    KP  EKR  +   +SS+SYS   P+QVA SSA++  Q GV G E R   QG  ++EP++MMQRPQSINIK + V N SASPPG   WY NN + V++M  NGK++H QS+G+ G G   SQHFY Q+QS R+ G +N +S+Q   Q +Y Q   YMS+SVDP AAR +  SWS +G      S SPSLTVPSSLGLFSG+GS  + G  S VDW+  D MSHCDYNSIDWTL+SN  S  K + LML   S GLM GLSSM     NG+R+ GLQDGG  TEAT+SG  REWTSPFAGKDIFSLPRQFVTSPSP
Sbjct:    1 MSPASKSKSKSKDKSSARAAKEQQKASSKLSGSTNTGNGSPASAYNPISGTFHTLDTAPVSSYPPLHNNGRFRNIEETDEHSGSSHGTAPEYDSLSNNGSCSGESEDHKEKTASTTPRQETIPGSDNDKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLEVLSQQLMAMGFSSERATLALMLNEGRVEESVSWLFEGSE-ETQKKDLGSEANLKIDISEEIARIKVMEVTYKCSKQEVERAVIACEGDLEKAEETLKAQKPEPPVTPLQLEETDNPKHPIRPKEKPTVSVTIQQRKNERDPNYVRGAT---TVPESGNRNLQSLKTNQPKPLAEKRGPTMGSSSSVSYSMASPMQVAPSSAQMEVQHGVGGHEVRSIQQG-TVREPVIMMQRPQSINIKQNLVSNVSASPPGAIGWYTNNALAVESMKSNGKLLHDQSTGSLGPGNLNSQHFYLQTQSTRSTGRENLTSQQSYPQTRYTQH-PYMSSSVDPAAAR-MGGSWSTMGASSPSPSPSPSLTVPSSLGLFSGWGSTGSLGSNSQVDWSTGDQMSHCDYNSIDWTLESNSAS-SKRSGLMLGQSSSGLMLGLSSMRMAGVNGIRITGLQDGGVVTEATSSGGLREWTSPFAGKDIFSLPRQFVTSPSP 641    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IFL3 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 356/662 (53.78%), Postives = 438/662 (66.16%), Query Frame = 0
 
Query:    1 MSPATKSKSKSKEKPLTKATKELQKASQK--YPESNNGSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKDI---GSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQK-PEPITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKR-VSGNYNSSLSYSSTGPIQVASSSAKVMAQLG-VGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTS-------------------SSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLK--SNPMSPPKLNDLMLEDRSGGLMRGLSSMHSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            MSPA+KSKSKSK K    A K+ QK S K     +  G +PASAYNP+SGTFH+L+++S  +SPP   NGRFRNI++TD+HS + H T  EYDS+SNN SCSGESED KEK   +  R + V  SDN+KREKIRQKNERKHQRQRERRAQELH+RC+GYLMSRKLE+LSQQ+VAMGF SERAT+ALMLNEG+++ESV WLFE  E+E+ +KDI   GSGANLKIDI+EE+ARIS +EV ++CSKQEVER VV+CEGDLDKAE+TL +QK  +P T  KPEE+   ++ M  QE P ++VT    R E +  + K A A+PT P  G+RN    K    K   EKR ++   + S S +   P+QVA SSAK+ A+LG VG EGR  HQG A++EP+V+MQRPQSIN K   V + SAS  G   WY N+V GV+N+  NGK V +QS+G+F                GP++  S Q+  QA Y ++  +M   VD  +A  +  SWS +G S                   SS SLTVPSSLGLFSG GS  T G  SHVDWN   +M   DY SIDWTL   S+  S      L    R+   MR    + STNG  ++GLQDGG  TE ++S    EWTSPFAGKDIFS PRQFVTSPSP
Sbjct:    1 MSPASKSKSKSKNKASAGAAKDQQKTSSKPSGSSNTGGGSPASAYNPVSGTFHTLETSSVPTSPPFHENGRFRNIDDTDEHSSSPHGTVSEYDSVSNNGSCSGESEDQKEKIAHSTPRQEAVPGSDNDKREKIRQKNERKHQRQRERRAQELHDRCNGYLMSRKLEALSQQLVAMGFPSERATLALMLNEGKVEESVTWLFERNEEETHSKDITNLGSGANLKIDISEEVARISALEVSYRCSKQEVERAVVACEGDLDKAEDTLRTQKQDQPATLSKPEETVETRNMMRPQEMPIASVTIQQRRFERDFNFPKTAAAVPTFPEPGNRNLQLLKAHQLKALAEKRWLAMGSSPSASLNLAPPMQVAPSSAKMEARLGVVGNEGRMIHQG-AVREPVVVMQRPQSINAKQHPVSSISASASGAVSWYANSVPGVENIRSNGKFVQNQSAGSF----------------GPEHQRSEQFYHQAPY-KEFPFMFGPVDSTSAG-LGGSWSTMGASSPSLTVPSEPRGSWSTMGASSHSLTVPSSLGLFSGQGSAGTFGSSSHVDWNTGGLMPELDYTSIDWTLDYHSSSKSSGLWLGLSSLLRNSSGMR----LGSTNGKFISGLQDGGVATETSSSAGLHEWTSPFAGKDIFSAPRQFVTSPSP 639    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A660KPU7 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 333/633 (52.61%), Postives = 422/633 (66.67%), Query Frame = 0
 
Query:   22 ELQKASQKYPESNN--GSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKDI---GSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNS-SLSYSSTGPIQVASSSAKVMAQLG-VGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAAR---------PVAP--SWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMH--STNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            E QK S K   S N  G + A+AYNP+SGTFH+L+++S    PPL  +GRF NI++TD+HS + H T  EYDS+SNN SCSGESED KEK   + IR D+V  SDN++REKIR KNERKHQRQRE+RAQELH+RCSGYLMSRKLE+LSQQ+VAMGF+SERAT+AL+LNEG+++ESV WLF+G+E+ +  KDI   GS ANLKIDI+EELA+IS +E R+K SKQEVER VV+CEGDLDKAE+T+ +QK E P T  KPEE+A  K+ M  QE P ++      RNE +  Y K   A+PT P  G+RN    K    K   EKR +   +S S S + T P+QVA  SAKV AQLG VG EGR   QG A++EP+V+MQRPQ++N K + V + SASP GT  WY ++V  V+N+  N K++                 Q+Q+  +  +N SS Q+  QA Y ++  +M   VDP ++R         P  P  SWS +G SS  SLT PSSLGLF   GS  T G  SHVDWN   +M  CDY SI+W + + P      + L+LE  S  L+R  S M   + NG  ++GLQDGG  TE+++S   REWTSPFAGKDIFS+PRQFV SPSP
Sbjct:   22 EQQKTSSKPSASTNTGGGSAANAYNPVSGTFHTLETSSVAPLPPLHDSGRFHNIDDTDEHSSSPHGTVSEYDSVSNNGSCSGESEDPKEKIAHSTIRQDIVPGSDNDRREKIRLKNERKHQRQREKRAQELHDRCSGYLMSRKLEALSQQLVAMGFSSERATLALILNEGKVEESVAWLFDGSEEAAHQKDITELGSRANLKIDISEELAQISVLEERYKWSKQEVERAVVACEGDLDKAEDTIRTQKQEQPATPSKPEETAGTKNLMRPQEMPAASAALQQRRNERDFNYPKTTAAVPTFPEPGNRNLQLLKTNQLKTLAEKRWAATGSSPSASLNLTPPLQVAPLSAKVEAQLGVVGNEGRILQQG-AVREPVVVMQRPQTVNAKQNHVSSVSASPAGTAPWYVSSVPAVENIRSNWKII-----------------QNQTVAISRENQSSEQFYHQAPY-KEFPFMFRQVDPTSSRGASSPSLMVPSEPRGSWSTMGGSSH-SLTAPSSLGLFPAQGSAGTFGSSSHVDWNTGGLMPDCDYTSINWAV-NYPADSKSSSGLLLEFSS--LLRNSSGMRLGNPNGKFMSGLQDGGVATESSSSAGSREWTSPFAGKDIFSVPRQFVISPSP 631    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZE46 ((uncharacterized protein LOC104593648 {ECO:0000313|RefSeq:XP_010251914.1, ECO:0000313|RefSeq:XP_010251915.1}))

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 328/645 (50.85%), Postives = 410/645 (63.57%), Query Frame = 0
 
Query:   39 PASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDH-KEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESAS-------------LKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRN-QLSSKIIP----SKPQ----TEKRV-SGNYNSSLSYSSTGPIQVASSSAKVMAQ-LGVGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAP-------SWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKL----------NDLMLEDRSGGLMRGLSSM---HSTNGVRVAGLQDGGPTEATTSGV----PREWTSPFAGKDIFSLPRQFVTSPS 631
            PASAYNPLSGTFH+L+SA   SSPP  SNGRFRNI+ETD+HSG+   T  EYDS+SNNDSCSGESED  KEK T+  +R + +  SDN+KR+KIRQKNERKHQRQRE+RAQELHERCSGYLMSRKLE+L+QQ+VAMGF+SERATMAL+LNEGR++ESV WLFEG E+ +Q KD  +  G+NLKIDI+EELARI+EMEVR KC+KQEVERVVV+CEGDL+KA ETL +QK E P   PKPEE+                ++ +  Q KP  +VT    R+E +  Y+K    + T     ++N Q   KI P    ++PQ    +EKR  S   + S+SYS   P+QV+S  AK  A+ + VG E +    G A++EP++MMQRPQSIN KP+ V + + SPP +  WY N+V GV+ M         +SSG    G QH              P++   +  +  +  + +  +   P A+ PV P       SWS +G++SS SL VPSSLGLFSG+GS   SG  S VDWN    M  CDY +IDWTL+S   S P            N  M +  S     G   +    +TNGV +AGLQDGG     TSG       EWTSPFAGKD+FSLPRQFVTSPS
Sbjct:   37 PASAYNPLSGTFHTLESAPVVSSPPPHSNGRFRNIDETDEHSGSSLGTGAEYDSISNNDSCSGESEDQQKEKTTSAPVRQEAIPGSDNDKRDKIRQKNERKHQRQREKRAQELHERCSGYLMSRKLEALAQQLVAMGFSSERATMALILNEGRVEESVAWLFEGGEEAAQQKDSNLDGGSNLKIDISEELARIAEMEVRFKCTKQEVERVVVACEGDLEKAAETLKAQKQEAPSASPKPEETGDPPVANGVKLAVSVTQNLVRQQAKPIPSVTIQQRRDERDFNYTKAVPTVVTSSEPANKNLQSLRKIQPKSEWARPQVATSSEKRWPSAGSSPSVSYSLASPLQVSSPPAKAEARYVVVGSEVKNLQTG-AVREPVIMMQRPQSINAKPNPVTSINPSPPVSAGWYSNSVAGVEIM---------KSSG----GLQHI-------------PTT---SLSSSNLSSQQFYQSQYQPFASSPVEPRTTSWGGSWSTLGSASS-SLAVPSSLGLFSGWGSTGASGSNSPVDWNTGGSMPQCDYTNIDWTLESTSSSKPNGLWLGLASFMNNSRMYDSWSSATSAGAKPVMRSATTNGVCIAGLQDGGVAATDTSGTSSAGSHEWTSPFAGKDLFSLPRQFVTSPS 650    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LCW6 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0
Identity = 318/627 (50.72%), Postives = 406/627 (64.75%), Query Frame = 0
 
Query:   40 ASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD---IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPEP-ITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKR---VSGNYNSSLSYSSTGPIQVASSSAKVMAQLG-VGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTS-------------------SSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSS-MHSTNGVRVAG-----LQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            ASAYNP+SGTFHS++++S  +SPP   NGR+ NI++TD+HS + H T  EYDS+SNN SCSGESED K+K   +  R + V  SDN++REKIR KNERKHQRQRERRAQELH+RC+GYLMSRKLE+LSQQ+VAMGF SERAT+ALMLNEG+++ESV WLFE  E+E+   D   +GS ANLKIDI+EELARIS +EVR+KCSKQEVER VV+ EGDLDKAE+TL +QK E   T  KPEE+A  ++ +  QE P ++VT    R E +  Y + A+A+P     G+RN    K    K   EKR   +  ++++ L+ +   P+QVA  SAKV ++L  VG +GR   QG A++EP+V+MQRPQSIN K + V + S S  G   WY ++V GVDN+  NGK + +QS+G F                GP+N  S Q+  QA Y ++   M   VD  +A  +  SWS +G S                   SS SLTVPSSLGLFSG GS  T G P+HVDWN   +M   DY SIDWTL           D     +S GL  GLSS + +++G+R+       + DGG  TE ++S    EWTSPFAGKDIFS PRQFV+SPSP
Sbjct:   42 ASAYNPVSGTFHSIETSSAATSPPFHDNGRYCNIDDTDEHSSSPHGTVSEYDSISNNGSCSGESEDPKDKIAHSTPRQEAVPGSDNDRREKIRLKNERKHQRQRERRAQELHDRCNGYLMSRKLEALSQQLVAMGFPSERATLALMLNEGKVEESVTWLFERNEEENHQNDNTNLGSQANLKIDISEELARISALEVRYKCSKQEVERAVVTFEGDLDKAEDTLRTQKQEEHATMSKPEETAGTRNLIRPQEMPVASVTIQQRRIERDYNYPQTAMAVPAFSDPGNRNLQILKANHLKALAEKRWLAMGASHSAPLNLAP--PMQVAPPSAKVESRLSVVGNDGRIMQQG-AVREPVVVMQRPQSINAKQNPVSSISVSASGAVPWYASSVPGVDNIRSNGKFMQNQSAGIF----------------GPENQRSEQFYHQAPY-KEYPLMFGPVDSTSAG-LGGSWSTMGASSPSHSVPSEPRGSWNTMGASSHSLTVPSSLGLFSGQGSAGTFGSPAHVDWNTGGLMPELDYTSIDWTL-----------DYPSSAKSNGLWLGLSSFLRNSSGMRLGSTNGKFISDGGVATETSSSAGLNEWTSPFAGKDIFSAPRQFVSSPSP 636    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835TKY6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9688817.1}))

HSP 1 Score: 526.168 bits (1354), Expect = 3.730e-178
Identity = 335/660 (50.76%), Postives = 431/660 (65.30%), Query Frame = 0
 
Query:    1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNN--GSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEK--PTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPI--QVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQSQSRN----LGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSM---------HSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            MSPA+KSK+KSK+K L K+ KE Q  S K   S N     P +AYNP SGTFH+L++ SG +  PL  NGRFRNI+E ++HS + H T  EYDS+SNN SCSGESED KEKA +T  R + V + D++KREKIR KNE+KHQRQRE+RAQELHERCSGYL SRKLE LS+Q+VAMGF+ ERAT+ALMLNEG +++SVNWLFEG+E+E+Q+KD  +GSG +LKIDI EELA+IS ME+R+KCSKQEVERVVV+CEGDL KAEETL++QK E P T P+PE +A   +     EK  PT++VT     NE +  Y K A+ +PT+   GSRN L  +  P K   +KR  G   SS  +SS+  +  QVA  S K+  +LG+ G EG+   Q   ++EP++MMQRPQSIN   ++V ++SA+P  T+ WY NNV GV+NM  N K++ + S+ N G    +  Q ++P S+  N     GP   ++RQ  T++      + +  S                 T+S PSL  PSSLGLF+G+GS  T G P HVDWN   +M   DY SIDWTL SN          +L  +S GL   LSS+          STN   ++GL+D G   E ++S    EWTSPFAGKD+FSLPRQF TSPSP
Sbjct:    1 MSPASKSKTKSKDKTLVKSAKEQQNVSIKPSGSTNIVSGNPVNAYNPTSGTFHALETPSGAAFLPLHDNGRFRNIDEPEEHSSSPHGTLSEYDSVSNNGSCSGESEDIKEKAIST--RQETVGL-DSDKREKIRLKNEKKHQRQREKRAQELHERCSGYLRSRKLERLSEQLVAMGFSHERATLALMLNEGSVEKSVNWLFEGSEEEAQSKDSKLGSGGSLKIDICEELAQISAMEMRYKCSKQEVERVVVACEGDLVKAEETLDAQKQELPPTPPRPEYTADTNNLRRLHEKPLPTASVTAQQRMNEQDFNY-KTAIPVPTYSEPGSRN-LQPQNQP-KSLADKRW-GTTGSSPVFSSSMALSMQVAPPSTKIDVRLGLAGNEGKNLQQ--IVREPVIMMQRPQSINAIQNTVPSASATPV-TSGWYLNNVSGVENMRSNVKLLPNLSTRNLGLVNQSSEQFYHPVSRKENPFLFSGPAT-TNRQGGTRSPSFTVPSQLQGSYGKT-------------TASLPSLAAPSSLGLFTGWGSAGTLGSP-HVDWNTGSLMPEFDYTSIDWTLDSN----------LLSSKSNGLWMDLSSLLRNTSITRTSSTNSSFLSGLRDSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFATSPSP 625    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836XT98 ((Ubiquitin-associated/translation elongation factor EF1B protein {ECO:0000313|EMBL:KAG5227754.1}))

HSP 1 Score: 525.783 bits (1353), Expect = 5.165e-178
Identity = 336/660 (50.91%), Postives = 433/660 (65.61%), Query Frame = 0
 
Query:    1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNNGST--PASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEK--PTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPI--QVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQSQSRN----LGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSM---------HSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            MSPA+KSK+KSK+K L K+ KE Q AS K   S N ++  P +AYNP+SGTFH L++ SG + PPL  NGRFRNI+E ++HS + H T  EYDS+SNN SCSGESED KEKA +T  R + V   D++KREKIR KNE+KHQRQRE+RAQELHERCSGYL SRKLE LS+Q+VAMGF+ ERAT+ALMLNEGR+++SVNWLFEG+E+E+Q KD  +GSG +LKIDI+EELA+IS ME+R+KCSKQEVERVVV+CEGDL KAEETL++QK E P T P+PE +A   +     EK  PT++VT     NE +   +K A+ +PT+   GSRN L  +  P K   +KR  G   SS ++SS+  +  QVA  S K   +LG+ G EG+   Q   ++EP++MMQRPQSIN K ++V ++SA+P  T+ WY NNV GV+NM  N  +  + S+ N G    +  Q ++P S+  N     GP   S+RQ  T++      + +  S                 T+S PSL  PSSLGLF+G+GS  T G  SHVDWN   +M   DY+SIDWTL SN          +L  +S GL   LSS+          STN   ++GL+  G   E ++S    EWTSPFAGKD+FSLPRQF TSP P
Sbjct:    1 MSPASKSKTKSKDKTLVKSAKEQQNASIKPSGSTNIASGNPVNAYNPISGTFHELETPSGAAFPPLHDNGRFRNIDEPEEHSSSPHGTLSEYDSVSNNGSCSGESEDMKEKAIST--RLETVPGLDSDKREKIRLKNEKKHQRQREKRAQELHERCSGYLRSRKLEKLSEQLVAMGFSHERATLALMLNEGRVEKSVNWLFEGSEEEAQRKDSKLGSGGSLKIDISEELAQISAMEMRYKCSKQEVERVVVACEGDLVKAEETLHAQKQELPTTPPRPEYTADTNNPRRLHEKPLPTASVTAQHRMNEQDFN-NKTAIPVPTYSEPGSRN-LQPQNQP-KSLADKRW-GTTGSSPAFSSSMALSMQVAPPSTKTDVRLGLAGNEGKNLQQ--IVREPVIMMQRPQSINGKQNTVPSASATPV-TSGWYLNNVSGVENMRSNVNLPPNPSTRNLGLVNQSSEQFYHPVSRKENPFLFSGPAT-SNRQGGTRSPSFTVPSQLQGSYGKT-------------TASLPSLAAPSSLGLFTGWGSAGTLG-SSHVDWNTGSLMPEFDYSSIDWTLNSN----------LLSSKSNGLWMDLSSLLRNTSITRGSSTNSSFLSGLRGSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFATSPYP 626    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5P0T9 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 525.013 bits (1351), Expect = 8.601e-178
Identity = 336/660 (50.91%), Postives = 430/660 (65.15%), Query Frame = 0
 
Query:    1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNNGST--PASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEK--PTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPI--QVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQSQSRN----LGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSM---------HSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
            MSPA+KSK+KSK+K L K+ KE Q AS K   S N ++  P +AYNP+SGTFH L++ S  + PPL  NGRFRNI+E ++HS + H T  EYDS+SNN SCSGESED KEKA +T  R + V   D++KREKIR KNE+KHQRQRE+RAQELHERC GYL SRKLE LS+Q+VAMGF+ ERAT+ALMLNEGR+++SVNWLFEG+E+E+Q KD  +GSG +LKIDI+EELA+IS ME+R+KCSKQEVERVVV+CEGDL KAEETL++QK E P T P+PE +A   +     EK  PT++VT     NE +  Y K A+ +PT+   GSRN L  +  P K   +KR  G   SS ++SS+  +  QVA  S K   +LG+ G EG    Q   ++EP++MMQRPQSIN K ++V ++SA+P  T+ WY NNV GV+NM  N K+  + S+ N G    +  Q ++P S+  N     GP   S+RQ  T++      + +  S                 T+S PSL  PSSLGLF+G+GS  T G  SHVDWN   +M   DY SIDWTL SN          +L  +S GL   LSS+          STN   ++GL+  G   E ++S    EWTSPFAGKD+FSLPRQF TSP P
Sbjct:    1 MSPASKSKTKSKDKTLVKSAKEQQNASIKPSGSTNIASGNPVNAYNPISGTFHELETPSSAAFPPLHDNGRFRNIDEPEEHSSSPHGTLSEYDSVSNNGSCSGESEDMKEKAIST--RLETVPGLDSDKREKIRLKNEKKHQRQREKRAQELHERCIGYLRSRKLERLSEQLVAMGFSHERATLALMLNEGRVEKSVNWLFEGSEEEAQRKDSKLGSGGSLKIDISEELAQISAMEMRYKCSKQEVERVVVACEGDLVKAEETLHAQKQELPPTPPRPEYTADTNNPRRLHEKPLPTASVTAQHRMNEQDFNY-KTAIPVPTYSEPGSRN-LQPQNQP-KSLADKRW-GTTGSSPAFSSSMALSMQVAPPSTKTDVRLGLAGNEGENLQQ--IVREPVIMMQRPQSINAKQNTVPSASATPV-TSGWYLNNVSGVENMRSNVKLPPNPSTRNLGLVNQSSEQFYHPVSRKENPFLFSGPAT-SNRQGGTRSPSFTVPSQLQGSYGKT-------------TASLPSLAAPSSLGLFTGWGSAGTLG-SSHVDWNTGSLMPEFDYTSIDWTLNSN----------LLSSKSNGLWMDLSSLLRNTSNTRGSSTNSSFLSGLRGSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFATSPYP 626    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067L8Z9 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 524.628 bits (1350), Expect = 1.449e-177
Identity = 325/635 (51.18%), Postives = 419/635 (65.98%), Query Frame = 0
 
Query:   18 KATKELQKASQKYPESNNGS--TPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE----PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNS-SLSYSSTGPIQVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQS--QSRNL--GPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWS-PVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMHSTNGVRVAGLQDGGPTEATTSGVP-REWTSPFAGKDIFSLPRQFVTSPSP 632
            +A KE QKAS K   S N +  TPASAYNP+SGTFH+L+  S TSSP    NGRFRNI++TD+HS + H T  EYDS+SNN SCSGESED K+K TT++ R + V   +N++REKIR KNE+KHQRQ+ERRAQELHERCSGYLMSRKLE+LS+Q+VAMGF+ ERAT+AL+LNEGR++ESVNWLFEG E+E++ KD  +G+ +NLKIDI+EELA+IS +EVR+KCSKQEVER +V+CEGDL KAEE L +QK E    P+T  +  ++  LK    H++  +S++T    RNE +  Y+K ++ALP +   G+R+     +  S+   +KR +    S S S     P QV   SAK+  +LGV G EG+  HQ   ++EPIVMMQR QSIN K + V + SASP  T  WY NN  GV+N+     +V +QSSG+ G       Q ++P S  +S NL  GP + +S  + +    M        S  P  A P  P  S  V ++SSP L  PSSLGLFSG+GSG T G  +HVDWN   +M   DYNSIDWTL +N +S       +          G + M+S N   ++GL+D G T+ T+S     EWTSPFAGKDIFSLPRQFVTSPSP
Sbjct:   18 RAAKE-QKASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHSSSPHGTVSEYDSVSNNGSCSGESEDPKDK-TTSSTRQETVPGLENDRREKIRLKNEKKHQRQKERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFEGNEEEARNKDSKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAEEILQAQKLEQPATPLTSEEVTDANDLKRT--HEKPLSSSITIQQRRNEQDFNYAKTSIALPMYSEPGNRSL--QPLNQSRSLADKRWTATGTSPSFSLGMASPGQVTPQSAKLEVRLGVSGNEGKN-HQ-HILREPIVMMQRRQSINAKQNQVPSISASPSVTAGWYSNNGPGVENV---RSLVPNQSSGSLGLVNQNSEQFYHPASYKESPNLFNGPIDSASAGFRSSWNAM--------SKSPAHAVPYEPQSSYGVVSASSPPLAAPSSLGLFSGWGSG-TLGSSAHVDWNT-GVMPEFDYNSIDWTLDNNMLSSKPSGLWLGLSSLLRNSSG-TRMNSMNSSCISGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPSP 630    
BLAST of XM_017371456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067DWW5 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})

HSP 1 Score: 522.702 bits (1345), Expect = 9.159e-177
Identity = 318/640 (49.69%), Postives = 409/640 (63.91%), Query Frame = 0
 
Query:   22 ELQKASQKYPESNNGS--TPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALP-THPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPIQVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARP--------------VAP-----SWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDW--TLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMH--STNGVRVAGLQDGGP-TEATTSGVPREWTSPFAGKDIFSLPRQFVTSP 630
            E QKA  K   S N     PASAYNP+SGTFH+LD++S  +SPP   NGRFRNI++TD+HS   H T  EYDS+SNN SCSGESED KEK   ++ R D +  SDN++REKIR KNE+KHQRQRE+RAQELHERC GYLMSRKLE+LSQQ+VAMGF+SERAT+ALMLNEGR++ESVNWLFE +E+E++  D  + S  +LKIDI+EELARISE+E+R+KCSKQEVER VV+ EGDLDKAE+T+  QK E P T P+P+++A  K  +  QEK  + +T    RNE +  Y+K A  +P T   TGSRN LS     SK   +KR + + +S+ +  +        S +KV  +  V G EG+   Q   ++EP+++MQRPQS+N K     ++++SP  T  WY  NV  V+N+  N K++        GTG++           G +N SS  +  QA Y ++  YM N V+ ++A                 AP     SWS +G  SSPSL VPSSLGLF+ +GS  T G  SHVDWN   +M  CDY SIDW     ++  S PK N L     S  L+R    M     NG  ++GLQD G  TEA+++G  REWTSPFA KDIFS+PRQFVTSP
Sbjct:   18 EQQKAPIKPSGSANAGNGVPASAYNPISGTFHTLDTSSVATSPPYHDNGRFRNIDDTDEHSSRPHGTVSEYDSVSNNGSCSGESEDPKEKFANSS-RQDPIPGSDNDRREKIRLKNEKKHQRQREKRAQELHERCCGYLMSRKLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPATPPRPDDTADTKSMVRPQEKLLAPITIQQRRNERDFNYTKAAATVPITFTETGSRNLLSPVPNQSKLLADKRWAASGSSASASLTATAHMPLVSPSKVEVRQAVAGNEGKTIQQ---VREPVIVMQRPQSMNAKQIPASSAASSPQVTAGWYAKNVPAVENVRPNAKILQ-------GTGTR-----------GTENQSSELFYRQAPY-KEIPYMHNPVESISAGLGSSWSSMGSSSPSLTAPSKSRGSWSTMGM-SSPSLAVPSSLGLFASWGSAGTLGSSSHVDWNTGGLMPECDYTSIDWTLDTSTSLSSSPKPNGLWFGISS--LLRNSPGMRMGGANGTCMSGLQDNGAVTEASSAGGLREWTSPFAEKDIFSVPRQFVTSP 631    
Match NameStatsDescription
A0A5B7B965E-Value: 0.000e+0, PID: 62.40UBA domain-containing protein {ECO:0000259|PROSITE... [more]
A0A2N9IFL3E-Value: 0.000e+0, PID: 53.78UBA domain-containing protein {ECO:0000259|PROSITE... [more]
A0A660KPU7E-Value: 0.000e+0, PID: 52.61UBA domain-containing protein {ECO:0000259|PROSITE... [more]
A0A1U7ZE46E-Value: 0.000e+0, PID: 50.85(uncharacterized protein LOC104593648 {ECO:0000313... [more]
A0A7N2LCW6E-Value: 0.000e+0, PID: 50.72UBA domain-containing protein {ECO:0000259|PROSITE... [more]
A0A835TKY6E-Value: 3.730e-178, PID: 50.76(Uncharacterized protein {ECO:0000313|EMBL:KAF9688... [more]
A0A836XT98E-Value: 5.165e-178, PID: 50.91(Ubiquitin-associated/translation elongation facto... [more]
A0A5N5P0T9E-Value: 8.601e-178, PID: 50.91UBA domain-containing protein {ECO:0000259|PROSITE... [more]
A0A067L8Z9E-Value: 1.449e-177, PID: 51.18UBA domain-containing protein {ECO:0000259|PROSITE... [more]
A0A067DWW5E-Value: 9.159e-177, PID: 49.69UBA domain-containing protein {ECO:0000259|PROSITE... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content