XM_017371078.1

Resource Type: 
Polypeptide
Name: 
XM_017371078.1
Identifier: 
XM_017371078.1-protein
Sequence: 
MSEPQAVEDEDKSKNSTRKPGNSASYPVGLIDRESLMMMDVDLDLDASWI
FDQISTDPASPFLLSDQPFSPLWPFSDDASALSAPLTGVSLPLLPSCDPQ
LTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKEST
EQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSV
DGESNLLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLAL
PVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHS
SIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYG
GGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQ
GVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHT
GNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEE
GRSVEVIEASSDGDPDSRIISVQKLESNVIPCTVTRDGENGHVDLSGKPI
IQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEV
LQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKL
KRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIP
SEVRAEINNDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKT
GSGSREHSTGTPTSHASAQGSPFNVNNSSQNDQVVSLLGEDCLKVGASFE
MARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQT
GGTFPDERIPESSWANQPPSDEFLKGSVPHLEEKPQIPSRTEVKTVTVKA
TYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIA
CDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG
Sequence Length: 
989
Sequence Checksum: 
31b3087fb78e133bcbb135298284669a
View location in JBrowse: 
DCARv2_Chr9:14564091..14570128-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017371078.1, derives from mRNA, XM_017371078.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGF0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42961.1}))

HSP 1 Score: 1281.54 bits (3315), Expect = 0.000e+0
Identity = 656/983 (66.73%), Postives = 773/983 (78.64%), Query Frame = 0
 
Query:   30 LIDRESLMMMDVDLDLDASWIFDQI-STDPASPFLLS--DQPFSPLWPFSDD---ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGS-VPHLEEKPQIPSRTEVKTVTV--KATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
            +++RESL  +D+DLD   SW FDQI + +P SPF LS  +QP SPLW FSDD    +A +AP + ++  L  +C+P    ++    ++DK+ +P P+LGL P+DY DGSC+IKERMTQALRY KESTEQHVLAQ+WAPVK G +YVLTTSGQPFVL  +S+GLHQYRM S MY+FSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALEAV+LKSS+ILDH + Q   ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL  GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD HMWGFREACAEHHL KGQGVAGR+F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS++TG D+YILEFF+PPN  +    +T+LD++L TM+  FRSL+VASGKE + EGRS + I+AS+D   DSR+ SVQ  +S + P     +   GE  H+D   + +++  DA++ +     +G + N  P SENKD  KKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SSLP  VGS+ WP SLNGS+ QNSPVS PSE+  E N         +DGQAE  +   GGR+    E IH Q G++PELGEG N+S+TGSGSRE STGTPTSH S QGSP   + +S QND  V  + E  ++VG  FE+A QPI E NL   F +P+ +V  + +E FGGMLIEDAGSSHDL NLC       D+++P       P  D   + S V   +  P   +R E KT+T+  KATY+EDIIRFRL L+SGI+KL+EEV+KR+KLEVGTFD+KYLDDD EWVLIACDADLQEC +IS+SSGRNIIRLLV DIMANLGSSCES+G
Sbjct:   24 VVERESLTGLDIDLD--GSWSFDQIFACNPTSPFFLSSSEQPCSPLWTFSDDNDEKTAGNAP-SALAGSLRLACNPDSIIESPY-ENDDKRRMPPPILGLTPIDYPDGSCVIKERMTQALRYLKESTEQHVLAQVWAPVKNGGQYVLTTSGQPFVLDPHSNGLHQYRMVSAMYVFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQ---ICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTNTGCDDYILEFFLPPNITDSRDQHTLLDSLLVTMRHHFRSLRVASGKEFEYEGRSAQFIKASTDEKLDSRLESVQIPQSMISPPGPDALPNGGEMVHLDSLEQQLMEDFDAISGVNVGG-AGGVQNAVPFSENKDTSKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSLPVAVGSIPWPASLNGSNQQNSPVSNPSELLGEKNELPSHKTPGSDGQAETANQMLGGRVLGNKELIHEQTGFMPELGEGWNQSRTGSGSREESTGTPTSHGSCQGSPRPGIESSPQNDGFVFPIHEQGIEVGGLFELACQPIGELNLSAGFSIPDALVTTQPQEPFGGMLIEDAGSSHDLRNLCPGAEALLDKQVP-------PCPDVVPRESMVTPADRTPHFLARPEPKTITITMKATYREDIIRFRLSLNSGIVKLKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECADISKSSGRNIIRLLVHDIMANLGSSCESTG 991
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZG20 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42964.1}) (Fragment))

HSP 1 Score: 1277.31 bits (3304), Expect = 0.000e+0
Identity = 653/965 (67.67%), Postives = 753/965 (78.03%), Query Frame = 0
 
Query:   47 ASWIFDQI-STDPASPFLL--SDQPFSPLWPFSDDA---------SALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEV---------RAEINNDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEKPQIPS-RTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCES 987
             SW FDQI + +P SPFLL  SDQP SP+  FSD +         S L   L     P L +C+P  +        +DK+ LP P+L   PLDY DGSC++KERMTQALRYF+ESTEQHVLAQ+WAPVK G R VLTTSGQPFVLG +S+GLHQYRM S MYMFSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++AL YNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALEAV+LKSS+ILDH + Q   ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL  GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD H+WGFREACAEHHL KGQGVAGR F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS++TG+D+YILEFF+PPN  +     T+LD++LATMK+ FRSLKVASGKEL++EGRSV++I+AS+D   DSR+ SV+  +S + P        NGH+D   + ++   DA++   NV+G G I N  P SEN+   KKS RKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SS PA VGS+SWP SLNG + QNSP S PSE          R  + +DGQAE  +   GGR+   DE IH Q G + ELGEGSNRSKTGSGSRE STGTP S  S QGSP   + +S QND VVS + E+ +KVG   E+A QP  E NL   F +P+++V  + +E FGGMLIEDAGSSHDL +LC       DER+PE SW N P  D   K S+        IP+  TE+KTVT+KA YKE+IIRFRL LSSGI+KL+EEV+KR+KLE+GTFD+KYLDDD+EWVLI CD DLQEC++ S+SSG NIIRLLV DIMANLGSSCES
Sbjct:   44 GSWPFDQIFACNPMSPFLLLSSDQPCSPIGTFSDASNDKPAGNTQSTLDPSLRLADYPRLLACNPD-SITESTSGDDDKRRLPPPILSSAPLDYPDGSCVLKERMTQALRYFQESTEQHVLAQVWAPVKNGGRNVLTTSGQPFVLGSHSNGLHQYRMVSRMYMFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALDYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQ---ICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHLWGFREACAEHHLQKGQGVAGRVFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTNTGSDDYILEFFLPPNITDSGHQQTLLDSLLATMKQHFRSLKVASGKELEDEGRSVKIIKASTDEKLDSRLESVRISQSTISP-PGPGALPNGHLDSLEQQLMVDFDAISGGVNVSGEGGIQNAIPFSENEGTSKKSARKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSYPAAVGSISWPASLNGWNQQNSPGSNPSEFPGEKNELPSRKSLGSDGQAETANQMLGGRVLGNDELIHEQTGILLELGEGSNRSKTGSGSREESTGTPISLGSCQGSPCPGIESSPQNDPVVSPIPEEGIKVGELLELAFQPTGELNLSAGFSIPDILVTTQPQEPFGGMLIEDAGSSHDLRSLCPAAEALLDERVPECSWTNPPCPDVVPKESM-------TIPADTTELKTVTIKAAYKENIIRFRLSLSSGIVKLKEEVTKRLKLEMGTFDIKYLDDDREWVLITCDVDLQECMDFSKSSGSNIIRLLVHDIMANLGSSCES 996
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528211.1}))

HSP 1 Score: 1276.15 bits (3301), Expect = 0.000e+0
Identity = 659/1015 (64.93%), Postives = 780/1015 (76.85%), Query Frame = 0
 
Query:    1 MSEPQAVEDEDKSKNSTRKPGNSASYPVGLIDRESLMMMDVDLDLDASWIFDQI-STDPASPFLLS--DQPFSPLWPF---SDDASALSAPLT-GVSLPL-----LPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEK-PQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESS 988
            MSEP   E+ DK      +  N+A  PV  + RESLM    DLDLD SW FDQI + +P SPFL S  +QP SPLW F   +DD +  +AP T   SLP+     + +C+P    ++    ++DK+ LP P+L L P+DY D S +IKERMTQALRYFKESTEQHVLAQ+WAPVK G +YVLTTSGQPF L   SSGLHQYRM S+ YMFSVDGES+ +LGLPGRVF++KLPEWTPNVQYYSSKEYPRL +ALHYNVQG+LALPVFE SG +C+GVLEL+MTSQKINYAPEVDKVCKALEAVNLKSS+ILDH++ Q   ICN+GRQN+LAEILE+LT+VCETHKLPLAQTWVPCRHR VL YGGGLKKSCSSFDGSCMGQ+CMSTTD A+YVVD H+WGFREAC EHHL KGQGVAGR+F+S SSCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS+HTGNDNYI+EFF+PPN   G    T+LD++LATMK+ FRSLKVASGK+L++EGRSVE+I+AS+D   DSR+ S    +S + P     +  +GE  H D   + ++   D ++ + NV G G I N  P SENKD  KKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKI KVNRSLSKLKRVIESVQGAEG FTLTS+A SSLP  VGS+SW  +LNGS+ QNSP S PSE+  E N         +D Q +      GGR+      +  Q G++PEL E  NRSK GSGSRE STGTPTSH S QGSP     +S +ND VV  + +  + +GASFE+A QP  E NL   F +P+ +V  + +E FGGMLIED GSSHDL NLC       D+R+PE SW N P  D   + S+ +  ++ P + SR+ +KT+T+KATY+ED+IRFRL L+SGI+KL+EEV+KR+KL +GTFD+KYLDDDQ+WVLI CDADLQEC++IS+SSG NIIRLLV DIMANLGSSCES+
Sbjct:    1 MSEP---EEADKPFPPKSRELNTAP-PV--VQRESLM--GFDLDLDGSWSFDQIVACNPTSPFLFSSSEQPCSPLWVFYDDNDDKTVGNAPSTIAGSLPVADYNRILACNPDSIIESPY-GNDDKRRLPPPILDLTPIDYLDSSFVIKERMTQALRYFKESTEQHVLAQVWAPVKSGGQYVLTTSGQPFFLDSQSSGLHQYRMVSLTYMFSVDGESDEILGLPGRVFRKKLPEWTPNVQYYSSKEYPRLIHALHYNVQGSLALPVFETSGQSCVGVLELVMTSQKINYAPEVDKVCKALEAVNLKSSEILDHANTQ---ICNEGRQNSLAEILEILTVVCETHKLPLAQTWVPCRHRRVLTYGGGLKKSCSSFDGSCMGQICMSTTDAAFYVVDAHLWGFREACNEHHLQKGQGVAGRAFASHSSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTHTGNDNYIIEFFLPPNITNGRDQRTLLDSLLATMKQHFRSLKVASGKKLEDEGRSVEIIKASTDEKLDSRLESGGIPQSTISPPGSDALPNEGEMVHPDSLEEQLMMNFDGISGV-NVRGEGGIQNAGPFSENKDTSKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKRVIESVQGAEGAFTLTSMATSSLPVAVGSISWSATLNGSNQQNSPGSNPSELLEEKNELPSHKTPESDVQYDTATQMLGGRVLGNKVLVCEQTGFMPELDEDWNRSKAGSGSREESTGTPTSHGSCQGSPCPGTESSPRNDPVVFPIHKQDINIGASFELACQPTGELNLSTGFSIPDALVTTQPQEPFGGMLIEDVGSSHDLRNLCPAAEVLLDKRVPEYSWTNPPCPDVVPEESMANPADRMPHLLSRSVLKTITIKATYREDLIRFRLSLNSGIVKLKEEVAKRLKLAMGTFDVKYLDDDQDWVLIVCDADLQECMDISKSSGSNIIRLLVHDIMANLGSSCEST 1002
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZF01 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42962.1}) (Fragment))

HSP 1 Score: 1274.61 bits (3297), Expect = 0.000e+0
Identity = 646/951 (67.93%), Postives = 754/951 (79.28%), Query Frame = 0
 
Query:   61 PFLLS--DQPFSPLWPFSDD---ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGS-VPHLEEKPQIPSRTEVKTVTV--KATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
            PF LS  +QP SPLW FSDD    +A +AP + ++  L  +C+P    ++    ++DK+ +P P+LGL P+DY DGSC+IKERMTQALRY KESTEQHVLAQ+WAPVK G +YVLTTSGQPFVL  +S+GLHQYRM S MY+FSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALEAV+LKSS+ILDH + Q   ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL  GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD H+WGFREACAEHHL KGQGVAGR F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICL+S+HTGNDNYILEFF+PPN  +     T+LD++LATMK+ FRSLKVASGKEL++EGRSV++I+AS+D   DSR+ SV+  +S + P     +   GE  H+D   + ++   DA++   NV+G G I N  P SEN+   KKS RKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SSLP  VGS+ WP SLNGS+ QNSPVS PSE+  E N         +DGQAE  +   GGR+    E IH Q G++PELGEG N+S+TGSGSRE STGTPTSH S QGSP   + +S QND  V  + E  ++VG  FE+A QPI E NL   F +P+ +V  + +E FGGMLIEDAGSSHDL NLC       D+++P       P  D   + S V   +  P   +R E KT+T+  KATY+EDIIRFRL L+SGI+KL+EEV+KR+KLEVGTFD+KYLDDD EWVLIACDADLQEC +IS+SSGRNIIRLLV DIMANLGSSCES+G
Sbjct:    1 PFFLSSSEQPCSPLWTFSDDNDEKTAGNAP-SALAGSLRLACNPDSIIESPY-ENDDKRRMPPPILGLTPIDYPDGSCVIKERMTQALRYLKESTEQHVLAQVWAPVKNGGQYVLTTSGQPFVLDPHSNGLHQYRMVSAMYVFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQ---ICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHLWGFREACAEHHLQKGQGVAGRVFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLRSTHTGNDNYILEFFLPPNITDSGHQQTLLDSLLATMKQHFRSLKVASGKELEDEGRSVKIIKASTDEKLDSRLESVRISQSTISPPGPEALPNGGEMVHLDSLEQQLMVDFDAISGGVNVSGEGGIQNAIPFSENEGTSKKSARKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSLPVAVGSIPWPASLNGSNQQNSPVSNPSELLGEKNELPSHKTPGSDGQAETANQMLGGRVLGNKELIHEQTGFMPELGEGWNQSRTGSGSREESTGTPTSHGSCQGSPRPGIESSPQNDGFVFPIHEQGIEVGGLFELACQPIGELNLSAGFSIPDALVTTQPQEPFGGMLIEDAGSSHDLRNLCPGAEALLDKQVP-------PCPDVVPRESMVTPADRTPHFLARPEPKTITITMKATYREDIIRFRLSLNSGIVKLKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECADISKSSGRNIIRLLVHDIMANLGSSCESTG 939
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZIV0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42963.1}) (Fragment))

HSP 1 Score: 1242.64 bits (3214), Expect = 0.000e+0
Identity = 638/958 (66.60%), Postives = 738/958 (77.04%), Query Frame = 0
 
Query:   47 ASWIFDQI-STDPASPFLLS--DQPFSPLWPFSDDA---------SALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEV---------RAEINNDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEKPQIPS-RTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDI 977
             SW FDQI + +P SPFLLS  DQP SP+  FSD +         S L   L     P L +C+P  +        +DK+ LP P+L   PLDY DGSC++KERMTQALRYF+ESTEQHVLAQ+WAPVK G R VLTTSGQPFVLG +S+GLHQYRM S MYMFSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALEAV+LKSS+ILDH + Q   ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL  GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD HMWGFREACAEHHL KGQGVAGR F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS++TG D+YILEFF+PPN  +    +T+LD++L TM+  FRSL+VASGKE + EGRS + I+AS+D   DSR+ SVQ  +S + P     +   GE  H+D   + +++  DA++ +     +G + N  P SENKD  KKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SS P  VGS+SWP SLNG + QNSP S PSE          R  + +DGQAE  +   GGR+   DE IH Q G + ELGEGSNRSKTGSGSRE STGTP S  S QGSP   + +S QND V+S + E+ +KVG   E+A QP  E NL   F +P+++V  + +E FGGMLIEDAGSSHDL +LC       DER PE SW N P  D   K S+        IP+  TE+KTVT+KA YKE+IIRFRL LSSGI+KL+EEV+KR+KLE+GTFD+KYLDDD+EWVLI CD DLQEC++ S+SSG NIIRLLV DI
Sbjct:   25 GSWPFDQIFACNPTSPFLLSSSDQPCSPIGTFSDASNDKPAGNTQSTLDPSLRLADYPRLLACNPD-SITESTSGDDDKRRLPPPILSSAPLDYPDGSCVLKERMTQALRYFQESTEQHVLAQVWAPVKNGGRNVLTTSGQPFVLGSHSNGLHQYRMVSRMYMFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQ---ICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACAEHHLQKGQGVAGRVFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTNTGCDDYILEFFLPPNITDSRDQHTLLDSLLVTMRHHFRSLRVASGKEFEYEGRSAQFIKASTDEKLDSRLESVQIPQSMISPPGPDALPNGGEMVHLDSLEQQLMEDFDAISGVNVGG-AGGVQNAVPFSENKDTSKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSYPVAVGSISWPASLNGWNQQNSPGSNPSEFPGEKNELPSRKSLGSDGQAETANQMLGGRVLGNDELIHEQTGILLELGEGSNRSKTGSGSREESTGTPISLGSCQGSPCPGIESSPQNDPVISPIPEEGIKVGELLELAFQPTGELNLSAGFSIPDILVTTQPQEPFGGMLIEDAGSSHDLRSLCPAAEALLDERFPECSWTNPPCPDVVPKESM-------TIPADTTELKTVTIKAAYKENIIRFRLSLSSGIVKLKEEVTKRLKLEMGTFDIKYLDDDREWVLITCDVDLQECMDFSKSSGSNIIRLLVHDI 970
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PIF8 ((Uncharacterized protein {ECO:0000313|EMBL:PSR91420.1}))

HSP 1 Score: 1217.99 bits (3150), Expect = 0.000e+0
Identity = 627/971 (64.57%), Postives = 742/971 (76.42%), Query Frame = 0
 
Query:   47 ASWIFDQ-ISTDPASPFLLS--DQPFSPLWPFSDD-----ASALSAPLTG-----VSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN-----NDGQAENIDLPSGGRLQ----CEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEK-PQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
             SW FD   S +  SPF +S  +QP SPLW FSDD     A   ++ L G        P L SC+P+ +    Q  + +K+ L +P LGL P+DY DG C+IKERMTQALRY KESTEQHVLAQ+WAPVK G RYVLTTSGQPFVL  +S+GLHQYRM S+MYMFSVDGES+ +LGLPGRVFQQKLPEWTPNVQYYSSKEYPRL +ALH NVQGTLALPVFEPSG +C+GVLELIMTS +INYAPEVDKVCKALEAVNLKSS+ILDH + Q   ICN+GRQ AL EILE+LT+VCETHKLPLAQTWVPCRHRSVLA GGGLKKSCSSFDGSCMGQ+CMSTT+VA+YVVD HMWGFREACAEHHL KGQGVAGR+F+S + CFCEDIT+F KTEYPLVHYARMFGL+SSFAICL+S+HTGND+YILEFF+P +  +     T+LD++L TMK+ F SL V SGKEL+EEGR V++I+AS D   DS +   Q  +S ++P     +    E  +++   + +  + DA  +  +V G+G   N   L E K+  KK ERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGI+RWPSRKINKVNRSLS+LKRVIESVQGAEG FTLTS+A SSLP  V  +SWP S+NGS+ QNS    PSE+  E N     N   ++  D  +   LQ      +E IH +  ++PELGEGS++SKTGSGSRE STGTPTSH S QGSP+  N S+ QND  VS + E C+K G S E+  QP K+ NL  AF +P+ +V  E +E FGGMLIEDAGSSHDL NLC   G   DER PE  W N   ++   + ++ +  E+ PQ  +R EVKT+T+KATYKEDIIRFRL L SGI +L+EEV+KR+KLE+GTFD+KYLDDD EWVLIACDADLQEC++IS+SSG N+IR+LV D+ ANLGSSCES+G
Sbjct:   28 GSWPFDHNFSANLTSPFFISSSEQPCSPLWAFSDDNGDKLAGDATSTLAGGGHRLSEYPRLFSCNPE-SVTESQAGAGNKRRLSTPRLGLTPIDYPDGPCVIKERMTQALRYLKESTEQHVLAQVWAPVKNGGRYVLTTSGQPFVLDAHSNGLHQYRMVSLMYMFSVDGESDGVLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLTHALHCNVQGTLALPVFEPSGQSCIGVLELIMTSPRINYAPEVDKVCKALEAVNLKSSEILDHPNTQ---ICNEGRQKALVEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGSCMGQICMSTTEVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFASHNLCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLRSTHTGNDDYILEFFLPHHIRDNRHQRTLLDSILVTMKQHFWSLMVTSGKELEEEGRCVDIIKASMDEKLDSGLQHDQISQSAILPQDPEVLPNAPEMVNLESQEQQLRIEVDAKNSGGSVGGAGGTQNVVSLPEQKNLSKKRERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGITRWPSRKINKVNRSLSRLKRVIESVQGAEGAFTLTSIATSSLPVAVNPISWPASVNGSNQQNSGGYKPSELMEENNESTTLNKPGSQGHDAATNQMLQDGVLHREEVIHERNEFLPELGEGSSQSKTGSGSREESTGTPTSHGSCQGSPYLGNVSTPQNDLTVSPVHEKCIKFGGSSELLCQPEKDLNLSAAFSIPDALVTTEAQEPFGGMLIEDAGSSHDLRNLCPAAGALLDERAPEYGWTNPLGTELEPREAMDNPAERMPQFFARPEVKTMTIKATYKEDIIRFRLSLDSGIARLKEEVAKRLKLEMGTFDIKYLDDDHEWVLIACDADLQECLDISKSSGSNMIRVLVHDVSANLGSSCESTG 994
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SMK6 ((protein NLP6 isoform X1 {ECO:0000313|RefSeq:XP_011070353.1}))

HSP 1 Score: 1214.13 bits (3140), Expect = 0.000e+0
Identity = 630/974 (64.68%), Postives = 735/974 (75.46%), Query Frame = 0
 
Query:   47 ASWIFDQI------STDPASPFLLS--DQPFSPLWPFSDD------ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESNL-LGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGD----PDSRIISVQKLESNVIPCTVTRDGENGHVD-LSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINN---------DGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPH-LEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
             SW  DQI      +++PASPFLLS  +QP SPLW FSDD      A+     L   S  L  + +P  T       ++D+K LPSP +GL+P+D  DGSC+IKERMTQALRYFK+ TEQHVLAQ+WAPVK G RY+LTTSGQPFVL  NS+GLHQYR+ S+MYMFSVDG+++  LGLPGRVF+QKLPEWTPNVQYYSSKE+PRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDKVCKALEAVNLKSS+ILDH   Q+++ICN+GRQNALAEILE++T+VCETH LPLAQTWVPCRH SVLA GGG KK+CSSFDGSCMGQVCMSTTDVA+YVVD  +WGFREACAEHHL KGQGVAGR+F+S + CFC+DIT+F KTEYPLVHYARMFGL SSFAICL+S HTGNDNYILEFF+PP         T+LD++L TMK+ F SL+VASGK LD+E RS+E+I+AS D      PD    S  +  S  +P     +GE   +D L G+ ++ + +A     NV    E+ N A   E KD  KK ERKRGKAEK+ISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQG EGTF LTSLA SS+P  VGS+SW  +LNG + Q SP S PSE + E            D QAE  +   G R   E + +    G++P  GE SNRS+TGSGSRE STGTPTS  S QGSP   N +S QND VVS + E  +K+G S E+  Q  +E NL  AFP P+  +    EE FGGML+EDAGSSHDL NLC  G    DE + E SW   P +D   K  +    +  P+  SR EVKT+T+KATY+EDIIRFR+P+ SGI+KL+EEV+KR+KLE+GTFD+KYLDDD EWVLIACDADLQECV+ISRSSG NIIRLLV DIMANLGSSCESSG
Sbjct:   30 GSWPLDQIFAAAAAASNPASPFLLSNSEQPCSPLWAFSDDNNSGCFAAGAGFRLADSSRILSYAGNPD-TATESAVGNDDRKKLPSPFMGLMPIDNPDGSCIIKERMTQALRYFKDLTEQHVLAQVWAPVKNGGRYMLTTSGQPFVLDPNSNGLHQYRLVSLMYMFSVDGDTDGDLGLPGRVFRQKLPEWTPNVQYYSSKEFPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILDH---QSTQICNEGRQNALAEILEIITVVCETHTLPLAQTWVPCRHGSVLANGGGFKKTCSSFDGSCMGQVCMSTTDVAFYVVDARIWGFREACAEHHLQKGQGVAGRAFASHNVCFCQDITEFCKTEYPLVHYARMFGLKSSFAICLRSKHTGNDNYILEFFLPPTIRSYEDQQTLLDSLLVTMKQHFGSLRVASGKNLDDEWRSIEIIKASVDDKLNLRPDFAATSPPRPSS--VP-----NGETVQLDALEGQVVMTEFNATNIKGNVGSPTEVHNAASGGETKDTGKKPERKRGKAEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGGEGTFNLTSLATSSIPVTVGSISWAANLNGMNQQISPGSGPSEFQEEKKEVSITKAPGADEQAEGSNHILGDR-NVETQKLTHGAGFLP--GECSNRSRTGSGSREESTGTPTSQGSCQGSPCRRNETSPQNDPVVSPIDEHHMKMGGSHELVCQQTREINLSAAFPAPDNFMTV-PEEPFGGMLVEDAGSSHDLRNLCPAGEALFDEHVTEYSWTKPPCADTIPKDRLAAPADHMPRFASRPEVKTITIKATYREDIIRFRIPIDSGIVKLKEEVAKRLKLELGTFDIKYLDDDHEWVLIACDADLQECVDISRSSGSNIIRLLVHDIMANLGSSCESSG 988
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QJ04 ((Uncharacterized protein {ECO:0000313|EMBL:PSS09372.1}))

HSP 1 Score: 1211.82 bits (3134), Expect = 0.000e+0
Identity = 630/986 (63.89%), Postives = 742/986 (75.25%), Query Frame = 0
 
Query:   33 RESLMMMDVDLDLDASWIFDQI-STDPASPFLLS--DQPFSPLWPFSDD---------ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQ--AENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSD-EFLKGSVPHLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
            RE LM    DL LD SW FDQI S +P SPF +S  +QPFSPLW FSDD          S LS        P L SC+P+ +    Q  + +K+ L +P L L  +DY DGSC+IKERMTQALRYFKESTEQHVLAQ+WAPVK G  Y+LTTSGQPFVL  +S+ LHQYRM S+MYMFSVDGES+ +LGLPGRVFQQKLPEWTPNVQYYSSKEYPRL +ALHYNVQGTLALPVFEPSG +C+GVLELIMTS KINYAPEVDKVCKALEAVNLKSS+ILDH + Q   ICN+GRQ AL EILE+LT+VCETHKLP AQTWVPCRHRSVLA GGGLKKSCSSFDGSCMGQ+CMSTT+VA+YVVD HMWGFREACAEHHL KGQGVAGR+F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICL+SSHTGND+YILEFF+PP+  +     T+LD++L T+K+ F SL+VASGKEL+EEGR +E+I+AS +   D  + S Q  +S ++P     +    E  +++   + +  +  A  +   V G+G   N   L E K+  KK ERKRGKAEKSISLEVLQQYF GSLKDAAKSLGVCPTTMKRICRQHGI+RWPSRKINKVNRSLS+LKRVIESVQGAEG FTLTS+A  SLP  V  + WP S+NGS+ QNS    PSE+  E N         N G   A N  L  G  + C +E +H Q G++ ELGEG++RSKTGSGSRE STGTPTSH S QGSP+  N S+ QND  +S + E  +K+ +S E+  Q  KE  L  AF +P+ ++  E +E FGGMLIEDAGSSH+L NLC     F +E+ PE  W N   ++ E  +      E  P   +  EVKT+T+KATYKEDIIRFRL L SGI++L+EEV+KR+KLE+GTFD+KYLDDD EWVLIACDADLQECV+IS+SSG N+IRLLV D+ AN  SSCESSG
Sbjct:   16 REPLM----DLGLDGSWPFDQIFSANPTSPFFISSAEQPFSPLWAFSDDNGDKLAGDATSTLSGGHRLSEYPRLFSCNPE-SVTESQARTGNKRRLSTPCLELTRIDYPDGSCVIKERMTQALRYFKESTEQHVLAQVWAPVKNGGGYLLTTSGQPFVLDPHSNELHQYRMVSLMYMFSVDGESDGVLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLTHALHYNVQGTLALPVFEPSGQSCIGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNTQ---ICNEGRQKALVEILEILTVVCETHKLPSAQTWVPCRHRSVLANGGGLKKSCSSFDGSCMGQICMSTTEVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLRSSHTGNDDYILEFFLPPHIRDHRDQRTLLDSILVTLKQHFWSLRVASGKELEEEGRCIEIIKASMNEKLDLGLQSDQISQSAILPPYTEALPNAPEMMNLESREQQLRIEVGAKNSGGCVGGAGGNQNVVSLPEQKNVSKKPERKRGKAEKSISLEVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGITRWPSRKINKVNRSLSRLKRVIESVQGAEGAFTLTSIATCSLPVAVNPILWPASVNGSNQQNSAGYKPSELMEENNESTTLKKHRNHGHDVATNQMLRDG--VLCREEVVHEQNGFLRELGEGTSRSKTGSGSREESTGTPTSHDSYQGSPYLRNASTPQNDPTISPIHEKYIKIDSSSELLYQSAKELTLSAAFSIPDALITTEVQEPFGGMLIEDAGSSHNLRNLCPAAEAFLEEQPPEYGWTNPLGAELEPREAMANPAERMPLFFAGPEVKTMTIKATYKEDIIRFRLSLDSGIVRLKEEVAKRLKLEMGTFDIKYLDDDHEWVLIACDADLQECVDISKSSGSNMIRLLVHDVSANPASSCESSG 991
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061G5G4 ((Transcription factor, putative {ECO:0000313|EMBL:EOY25090.1}))

HSP 1 Score: 1209.13 bits (3127), Expect = 0.000e+0
Identity = 626/973 (64.34%), Postives = 748/973 (76.88%), Query Frame = 0
 
Query:   38 MMDVD-LDLDASWIFDQIS--TDPASPFLLS---DQPFSPLWPFSDDASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISV---QKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINN---------DGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQT-GGTFPDERIPESSWANQPPSD-EFLKGSVPHLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
            +MD+D LDL++SW  DQ +  ++P SP ++S   +QP SPLW FSD+    SA   G +L L  +C P+   +N +   NDK+ +PSP LGL+PL+  D  C+IKERMTQALRYFK+STEQHVLAQ+WAP+K G RYVLTTSGQPFVL  +S+GLHQYRM S+MYMFSVDGES+  LGLPGRVF+QKLPEWTPNVQYYSSKEY RLD+ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILD  S Q   ICN+ RQNALA+ILE+LT+VCET+KLPLAQTWVPCRHRSVLAYGGGLKKSC+SFDGSCMGQVCMSTTDVA+YVVD HMWGFREAC EHHL KGQGVAGR+F S++SCFC DIT+F KTEYPLVHYARMF L+S FAICL+S++TG+D+Y+LEFF+PP   + N+  T+L ++LATMK+ F+SLKVASG EL+++  S+E+IEASSD   DSR+ S+     ++S   P T    GE   +D S + +I   D  T+  NV  SG   N   L +NKD  KKSERKRGK EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSL+KLK VIESVQGA+G F LTS+A S LP  VGS+SWP SLNGS+ QNSP S PS+ + E  +         +GQA   D   GG    ++E    Q    P+L +G+NRSKTGSGSRE S GTPTSH S QGSP  + +++  D + S + E C K   S E+A QPI E N+P  F +P  +V  E +E FGGML+EDAGSS DL NLC +      DER PESSW   P +D   ++      +  P   +R E++++T+KATY+EDIIRFR+ LSSGI++L+EEV+KR+KLEVGTFD+KYLDDD E VLIACDADLQEC+++SRSSG NIIRL V D MANLGSSCES+G
Sbjct:   23 IMDLDDLDLESSWPLDQPTFLSNPTSPLIISSSSEQPCSPLWAFSDEDKVGSA--AGYNLFL--TCTPKPVNENPK-EDNDKRGIPSPFLGLLPLENPDSYCVIKERMTQALRYFKDSTEQHVLAQVWAPIKSGGRYVLTTSGQPFVLDPHSNGLHQYRMVSLMYMFSVDGESDGQLGLPGRVFRQKLPEWTPNVQYYSSKEYSRLDHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDPPSTQ---ICNENRQNALAKILEILTVVCETYKLPLAQTWVPCRHRSVLAYGGGLKKSCTSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACLEHHLQKGQGVAGRAFLSRNSCFCTDITQFCKTEYPLVHYARMFRLTSCFAICLRSTYTGDDDYVLEFFLPPAIADSNEQQTLLRSILATMKQHFQSLKVASGAELEDDEGSIEIIEASSDERLDSRLESIPIPPSVKSPPGPNTSPNRGEL-QLDSSKQQLIVTFDPATDGGNVVASGS-QNPVCLPQNKDV-KKSERKRGKTEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKHVIESVQGADGAFGLTSIATSPLPVAVGSISWPTSLNGSNQQNSPNSKPSDPQGEKYDLPTCRTPVSNGQALVEDQLLGGMTLSQEELFLQQNALSPDLNKGANRSKTGSGSREESAGTPTSHGSCQGSP-AIESAATKDPLSS-IQEQCFKARGSPELAFQPIGELNIPATFSMPEALVATEPQEPFGGMLVEDAGSSKDLRNLCPSVADVGIDERFPESSWTPPPCTDLALMQAMATFTQTTPHATARQEMRSLTIKATYREDIIRFRISLSSGIVELKEEVAKRLKLEVGTFDIKYLDDDSEMVLIACDADLQECLDVSRSSGSNIIRLSVHDAMANLGSSCESTG 982
[Close]
BLAST of XM_017371078.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IL17 ((Protein nlp7 {ECO:0000313|EMBL:OIS99570.1}))

HSP 1 Score: 1206.43 bits (3120), Expect = 0.000e+0
Identity = 634/982 (64.56%), Postives = 743/982 (75.66%), Query Frame = 0
 
Query:   47 ASWIFDQI------STDPASPFLLS----DQPFSPLWPFSDD--------ASALSAP-LTGVSLPLLPSCDPQLTY--DNKQCS-----SNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDHSSIQASKICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVA----GSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINNDG------QAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVP-HLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 989
            ASW FDQI      S +P SPFL+S    +QP SPLW FSD+         +ALSAP L   S P        LTY  D++  +     ++DKK +P P+LGL PLDY DGSC+IKERMTQALRY KEST + VLAQ+WAPVK G RY+LTTSGQPFVL  + +GLHQYRM S+MYMF+VDGE++ +LGLPGRV+++KLPEWTPNVQYYSSKE+PRL++ALHYNV+GTLALPVFEPSG +CLGVLE+IMTSQKINYAPEVD+VCKALEAVNLKSS+ILDH + Q   ICN+GRQNAL EILE+LT VCET+KLPLAQTWVPCRHRSVLA GGGLKKSCSSFDGSCMGQVCMSTTDV++YVVD HMWGFREACAEHHL KGQGVAGR+++SQ SCFCEDI  F KTEYPLVHYAR+FGLSS FAICL+S++TGND+Y+LEFF+PPN  + N    +L+++L TMK+ FRSL+VASG+EL+ +  SVEVI+AS +    SR+ SV   +S   P +     E   +      + ++     N+A VA    G+ E  N A  SENK A KKSERKRGKAEK+ISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGA+GTF+LTSLA +SLP  VGS+SWP  +NGS  + S      E R E +N G      +AE  +   G R+   +E    Q G++    EGS+RS+TGSGSRE S GTPTSH S QGSPF  N SS QN+ V S   E  +KVG S E ARQ   E NL  AF +P   +   T++LFGGML+EDAGSSHDL NLC  G    D+R+PE SW N P S+   K  V    E  PQ  +R EV +VT+KATY+EDIIRFRL LSSG+ KL+EEV+KR+KLEVGTFD+KYLDDD EWVLIACDADLQECV+ISRSSG N++RLLV DIM NLGSSCESSG
Sbjct:   56 ASWSFDQIFAAAAASNNPMSPFLVSTTASEQPCSPLWAFSDENEDNKPSTGNALSAPSLRFSSYPRF------LTYTGDHEAAAETLSVADDKKRIPPPILGLTPLDYLDGSCIIKERMTQALRYLKESTGERVLAQVWAPVKNGGRYMLTTSGQPFVLDPDCNGLHQYRMVSLMYMFAVDGETDGVLGLPGRVYRKKLPEWTPNVQYYSSKEFPRLNHALHYNVRGTLALPVFEPSGQSCLGVLEIIMTSQKINYAPEVDRVCKALEAVNLKSSEILDHPNTQ---ICNEGRQNALVEILEILTAVCETYKLPLAQTWVPCRHRSVLADGGGLKKSCSSFDGSCMGQVCMSTTDVSFYVVDAHMWGFREACAEHHLQKGQGVAGRAYASQKSCFCEDIRLFCKTEYPLVHYARLFGLSSCFAICLRSTYTGNDDYVLEFFLPPNDGDYNDQLALLNSLLLTMKQHFRSLRVASGEELEHDWGSVEVIKASMEDKLGSRLESVPTTKSLPQPASEVNGREPPDL------MEEQQSVELNVAKVAEGVNGTAEAHNHASFSENKGAGKKSERKRGKAEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGADGTFSLTSLAPNSLPVAVGSISWPAGMNGSPCKASEY---HEERNEFSNHGTPGSHEEAEPSNQMLGSRIIGSEELSPKQNGFV---REGSHRSRTGSGSREESAGTPTSHGSCQGSPFPANESSPQNELVNSPTQESSVKVGGSMEPARQTTGEINLSTAFLMPGPYIPEHTQQLFGGMLVEDAGSSHDLRNLCPAGDAMFDDRVPEYSWTNPPCSNGIAKDQVSLPAENMPQFSTRPEVTSVTIKATYREDIIRFRLLLSSGLFKLKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECVDISRSSGSNVVRLLVHDIMPNLGSSCESSG 1016
Match NameStatsDescription
A0A5B6ZGF0E-Value: 0.000e+0, PID: 66.73(Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more]
A0A5B6ZG20E-Value: 0.000e+0, PID: 67.67(Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more]
A0A5J5AGD1E-Value: 0.000e+0, PID: 64.93(Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more]
A0A5B6ZF01E-Value: 0.000e+0, PID: 67.93(Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more]
A0A5B6ZIV0E-Value: 0.000e+0, PID: 66.60(Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more]
A0A2R6PIF8E-Value: 0.000e+0, PID: 64.57(Uncharacterized protein {ECO:0000313|EMBL:PSR9142... [more]
A0A6I9SMK6E-Value: 0.000e+0, PID: 64.68(protein NLP6 isoform X1 {ECO:0000313|RefSeq:XP_01... [more]
A0A2R6QJ04E-Value: 0.000e+0, PID: 63.89(Uncharacterized protein {ECO:0000313|EMBL:PSS0937... [more]
A0A061G5G4E-Value: 0.000e+0, PID: 64.34(Transcription factor, putative {ECO:0000313|EMBL:... [more]
A0A1J6IL17E-Value: 0.000e+0, PID: 64.56(Protein nlp7 {ECO:0000313|EMBL:OIS99570.1})[more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.