XM_017371828.1

Resource Type: 
Polypeptide
Name: 
XM_017371828.1
Identifier: 
XM_017371828.1-protein
Sequence: 
MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLL
LTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILK
VWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAME
GEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKM
ACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHT
LLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPG
TDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERL
SESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKE
RHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGS
VVICWQDRPLFSVCAWRCKR
Sequence Length: 
470
Sequence Checksum: 
5649111021fde5844c98159fd669e2ac
View location in JBrowse: 
DCARv2_Chr9:18420854..18422266-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017371828.1, derives from mRNA, XM_017371828.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UJK6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP08492.1}))

HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 369/470 (78.51%), Postives = 416/470 (88.51%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SPGLGSPY WLKELKSE+RGLYLIHLLLTCA HVATGSLENAN+  DQISHLA+PDGDTMQRIASYFTEALA+R+LK WPGLYKALHST IS+ SE+++ RKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNA+E  QWRAL+QDLSARPEGPPHLRITGVH  KE+LD+MA +L+E+AEKLDIPFQFNPIVSKLENLD+EKLRVKTGEALAISS LQLH LL+  +E  +++ + P +S+G  L +  QM +GTLG+ L+KD++NG+SP +DS SSSP SS A+ +LD FLNALWGLSPKIMVV+EQDSNHNG+NLMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NIIACEG  RKERHEKLE+WIQR + AGFG V LSYY MLQA+RLLQ+ SCDGY+IKEENG +VICWQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSVTSSPLQMFPMMSLSPGLGSPYQWLKELKSEERGLYLIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRISVVSEEVLVRKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQQKEILDQMAHILSEDAEKLDIPFQFNPIVSKLENLDVEKLRVKTGEALAISSVLQLHALLATDEEMRKKSPMVPKSSNGHHLQRVLQMNQGTLGELLEKDLVNGYSPSSDSASSSPLSSNASAKLDSFLNALWGLSPKIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWRCRR 470
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DZT2 ((Uncharacterized protein {ECO:0000313|EMBL:THG09018.1}))

HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0
Identity = 361/471 (76.65%), Postives = 408/471 (86.62%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGT-DSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSS+TS+P Q  P   +SPG GS YPWLKELKSEDRGLYLIHLLL  A HVATGSLENAN+  DQIS LASP+GDTMQRIA+YFTEALA RILK WPGLYKALHST ISL SE+I+ RK+FFE FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE  QW ALI+DLSARPEGPPHLRITGVH  KEVL++MA +LTEEA++LDIPFQFN +VSK+E+LDIEKLRVKTGEALAISS LQLHTLL+  DE  +++ +TP N++GV L +T QM + TLG+ L+KD++NG+SP + DS SSSP S   + ++D FLNALWGLSPK+MVV+EQDSNHNGS LMERL E+LYFYAALFDCLESTLP+TS ERLK+EK LFGEEI++II  EG  RK+RHEKLE+WIQRLE AGFG VPLSYY MLQARRLLQSYSCDGYRIKEENG VV+CWQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSITSTPLQAFPIMSLSPGFGSAYPWLKELKSEDRGLYLIHLLLASANHVATGSLENANITLDQISQLASPEGDTMQRIAAYFTEALAERILKGWPGLYKALHSTRISLVSEEILVRKLFFELFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWGALIKDLSARPEGPPHLRITGVHQQKEVLEQMAHILTEEADRLDIPFQFNQVVSKVEDLDIEKLRVKTGEALAISSVLQLHTLLANNDELRKKSAMTPNNANGVNLQRTLQMNQRTLGELLEKDLVNGYSPTSHDSASSSPLSLNTSARMDSFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYFYAALFDCLESTLPKTSLERLKVEKMLFGEEIKDIITSEGAERKKRHEKLEKWIQRLELAGFGSVPLSYYAMLQARRLLQSYSCDGYRIKEENGCVVVCWQDRSLFSVSAWRCRR 471
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TMG8 ((scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_027079709.1}))

HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 367/470 (78.09%), Postives = 415/470 (88.30%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SPGLGSPY WLKELKSE+RGLYLIHLLLTCA HVATGSLENAN+  DQISHLA+PDGDTMQRIASYFTEALA+R+LK WPGLYKALHST IS+ SE+++ RKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNA+E  QWRAL+QDLSARPEGPPHLRITGVH  KE+LD+MA +L+E+AEKLDIPFQFNPIVSKLENLD+EKLRVKTGEALAISS LQLH LL+  +E  +++ + P +S+G  L +  QM +GTLG+ L+KD++NG+SP +DS SSSP SS A+ +LD FLNALW LSPKIMVV+EQD+NHNG+NLMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NIIACEG  RKERHEKLE+WIQR + AGFG V LSYY MLQA+RLLQ+ SCDGY+IKEENG +VICWQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSVTSSPLQMFPMMSLSPGLGSPYQWLKELKSEERGLYLIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRISVVSEEVLVRKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQQKEILDQMAHILSEDAEKLDIPFQFNPIVSKLENLDVEKLRVKTGEALAISSVLQLHALLATDEEMRKKSPMVPKSSNGHHLQRVLQMNQGTLGELLEKDLVNGYSPSSDSASSSPLSSNASAKLDSFLNALWSLSPKIMVVAEQDANHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWRCRR 470
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P829 ((Scarecrow-like protein {ECO:0000313|EMBL:PSR86801.1}))

HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 367/471 (77.92%), Postives = 412/471 (87.47%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADE-PHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP +  P   +SPG GSPYPWL+ELKSE+RGLYLIHLLL CA HVATGSLENAN+  DQIS LASPDGDTMQRIASYF EALA RILK WPG+YKALHST ISL SE+I+ RK+F+E FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE  QWRAL+QDLSARPEGPPHLRITGVH  KEVL++MA +LTEEAEKLDIPFQFN IVSKLE++DIEKLRVKTGEALAISS LQLHTLL+  DE   +++ VTP N++G+ L ++ QM +GTLG+ L+KD++NG+SP  DS SSSP S  A++++D FLNALWGLSPK+MVV EQDSNHNGS LMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NII+CEG  RK RHEKLE+WIQRL+ AGFG VPLSYY +LQARRLLQSYSCDGYRIKEENG V++ WQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSVTSSPLKAFPMMSVSPGFGSPYPWLRELKSEERGLYLIHLLLACANHVATGSLENANITLDQISQLASPDGDTMQRIASYFNEALAERILKNWPGIYKALHSTRISLVSEEILVRKLFYESFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQKKEVLEQMAHILTEEAEKLDIPFQFNQIVSKLEDIDIEKLRVKTGEALAISSVLQLHTLLANDDELLRKKSLVTPKNANGLNLQRSLQMNQGTLGELLEKDLVNGYSPSHDSASSSPLSLNASLRMDSFLNALWGLSPKVMVVMEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSLERLKVEKMLFGEEIKNIISCEGSERKRRHEKLEKWIQRLDLAGFGSVPLSYYSVLQARRLLQSYSCDGYRIKEENGCVMVYWQDRALFSVSAWRCRR 471
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HCI1 ((Scarecrow-like 3 {ECO:0000313|EMBL:GFZ20722.1}))

HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 369/471 (78.34%), Postives = 411/471 (87.26%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADE-PHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SPG GSPYPWL+ELKSE+RGLYLIHLLL CA HVATGSLENAN+  DQIS LASPDGDTMQRIASYF EALA RILK WPG+YKALHST ISL SE+I+ RK+F+E FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE  QWRAL+QDLSARPEGPPHLRITGVH  KEVL++MA +LTEEAEKLDIPFQFN IVSKLE++DIEKLRVKTGEALAISS LQLHTLL+  DE   +++ VTP N++G+ L ++ QM +GTLG+ L+KD++NG+SP  DS SSSP S  A+ ++D FLNALWGLSPK+MVV EQDSNHNGS LMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NII+CEG  RK RHEKLE+WIQRL+ AGFG VPLSYY MLQARRLLQSYSCDGYRIKEENG V++ WQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSVTSSPLQAFPMMSVSPGFGSPYPWLRELKSEERGLYLIHLLLACANHVATGSLENANITLDQISQLASPDGDTMQRIASYFNEALAERILKNWPGIYKALHSTRISLVSEEILVRKLFYESFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQKKEVLEQMAHMLTEEAEKLDIPFQFNQIVSKLEDIDIEKLRVKTGEALAISSVLQLHTLLANDDEFLRKKSLVTPKNANGLNLQRSLQMNQGTLGELLEKDLVNGYSPSHDSASSSPLSLNASPRMDSFLNALWGLSPKVMVVMEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSLERLKVEKMLFGEEIKNIISCEGSERKRRHEKLEKWIQRLDLAGFGSVPLSYYSMLQARRLLQSYSCDGYRIKEENGCVMVYWQDRALFSVSAWRCRR 471
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AI02 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55618.1}))

HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 370/471 (78.56%), Postives = 411/471 (87.26%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEP-HQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SPG GSPYPWLKELKSE+RGLYLIHLLLTCA HVAT SLENA++  DQIS LASP+GDTMQRIA+YF+EALA RILK WPGLYKALHST ISL SE+++ARK+FFE FPFLKVAFV+TNQAIIEAMEGEKMVHIIDLNAAE  QWRAL+QDLSARPEGPPHLRITGVH  KEVL++MA +L EEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISS LQLH+ L+  DE   +++ +TP NS+G  L +  Q  +GTLG+ L+KD++NG+SP  DS SSSP S TA+ ++D FLNALWGLSPK+MVV+EQDSNHNGS LMERL ESLYFYAALFDCLEST PRTS ERLK+EK LFGEEI+N+IACEG  RKERHEKLE+WIQRL+ AGFG VPLSYYGMLQARRLLQ Y+CDGYRIKEENG VVICWQDR LFSV AWRCKR
Sbjct:    1 MFQDDGSSSVTSSPLQIFPMMSLSPGFGSPYPWLKELKSEERGLYLIHLLLTCANHVATSSLENADIALDQISQLASPNGDTMQRIAAYFSEALAERILKTWPGLYKALHSTRISLVSEEVLARKLFFELFPFLKVAFVVTNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQQKEVLEQMAHILIEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSVLQLHSFLASDDEHLRKKSPLTPKNSNG--LQRVLQRNQGTLGELLEKDLVNGYSPSHDSTSSSPLSLTASGKMDSFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLESLYFYAALFDCLESTFPRTSLERLKVEKMLFGEEIKNVIACEGFERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLQARRLLQGYNCDGYRIKEENGCVVICWQDRALFSVSAWRCKR 469
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AFW5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55622.1}))

HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 371/471 (78.77%), Postives = 411/471 (87.26%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEP-HQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SPG GSPYPWLKELKSE+RGLYLIHLLLTCA HVAT SLENA++  DQIS LASP+GDTMQRIA+YF+EALA RILK WPGLYKALHST ISL SE+++ARK+FFE FPFLKVAFV+TNQAIIEAMEGEKMVHIIDLNAAE  QWRAL+QDLSARPEGPPHLRITGVH  KEVL++MA +L EEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISS LQLH+ L+  DE   +++ +TP NS+G  L +  Q  +GTLG+ L+KD++NG+SP  DS SSSP S TA+ ++D FLNALWGLSPK+MVV+EQDSNHNGS LMERL ESLYFYAALFDCLEST PRTS ERLK+EK LFGEEI+NIIACEG GRKERHEKLE+WIQ L+ AGFG VPLSYYGMLQARRLLQ Y+CDGYRIKEENG VVICWQDR LFSV AWRCKR
Sbjct:    1 MFQDDGSSSVTSSPLQIFPMMSLSPGFGSPYPWLKELKSEERGLYLIHLLLTCANHVATSSLENADIALDQISQLASPNGDTMQRIAAYFSEALAERILKTWPGLYKALHSTRISLVSEEVLARKLFFELFPFLKVAFVVTNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQQKEVLEQMAHILIEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSVLQLHSFLASDDEHLRKKSPLTPKNSNG--LQRVLQRNQGTLGELLEKDLVNGYSPSHDSTSSSPLSLTASGKMDSFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLESLYFYAALFDCLESTFPRTSLERLKVEKMLFGEEIKNIIACEGTGRKERHEKLEKWIQWLDLAGFGNVPLSYYGMLQARRLLQGYNCDGYRIKEENGCVVICWQDRALFSVSAWRCKR 469
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DAG2 ((Scarecrow-like 3 {ECO:0000313|EMBL:GFS30979.1}))

HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0
Identity = 365/471 (77.49%), Postives = 410/471 (87.05%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQR-THVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SPG GSPYPWL+ELKSE+RGLYLIHLLL CA +VATGSLENAN+  DQIS LASPDGDTMQRIASYFTEALA RILK WPG+YKALHST ISL SE+I+ RK+F+E FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE  QWRAL+QDLSARPEGPPHLRITGVH  KEVL++MA +LTEEAEKLDIPFQFN IVSKLE++DIEKLRVKTGEALAISS LQLHTLL+  DE  ++ + VTP N++G+ L ++ QM +GTLG+ L KD++NG+SP  DS SSSP    A++++D FLNALWGLSPK+M+V+EQDSNHNGS LMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NII+CEG  RK RHEKLE+W+QRL+ AGFG VPLSYY  LQARRLLQSYSCDGYRI EENG V+I WQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSVTSSPLQAFPMMSLSPGFGSPYPWLRELKSEERGLYLIHLLLACANYVATGSLENANITLDQISQLASPDGDTMQRIASYFTEALAERILKNWPGIYKALHSTRISLVSEEILVRKLFYESFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQKKEVLEQMAHILTEEAEKLDIPFQFNQIVSKLEDIDIEKLRVKTGEALAISSVLQLHTLLATDDELLRKISPVTPKNANGLNLQRSLQMNQGTLGELLDKDLVNGYSPSHDSASSSPVPLNASLRMDSFLNALWGLSPKVMLVTEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSMERLKVEKMLFGEEIKNIISCEGAERKRRHEKLEKWVQRLDLAGFGSVPLSYYSTLQARRLLQSYSCDGYRINEENGCVMIYWQDRALFSVSAWRCRR 471
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AJE6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55621.1}))

HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 355/449 (79.06%), Postives = 393/449 (87.53%), Query Frame = 0
 
Query:   23 MSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEP-HQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            +SPG GSPYPWLKELKSE+RGLYLIHLLLTCA HVAT SLENAN+  DQIS LASPDGDTMQRI++YFTEALA RILK WPGLYKALHST ISL SE+I+ RK+F E  PFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE  QWRAL+QDLSARPEGPPHLRITG+H  KEVL++MA +LTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISS LQLH+LL+  DE   +++ +TP NS+G  L +  QM +GTLG+ L+KD++NG+SP  DS  SSP S TA+ ++D FLNALWGLSPK+MVV+EQDSNHNG  LMERL ESLYFYAALFDCLEST PRTS ERLK+EK LFGEEI+N+IACEG  RKERHEKLE+WIQRL+ AGFG VPLSYYGMLQARRLLQ Y+CDGYRIKEENG VVICWQDR LFSV AWRCKR
Sbjct:    4 LSPGFGSPYPWLKELKSEERGLYLIHLLLTCANHVATSSLENANIALDQISQLASPDGDTMQRISAYFTEALAERILKTWPGLYKALHSTKISLVSEEILVRKLFLELLPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGIHQQKEVLEQMAHILTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSVLQLHSLLASDDERIRKKSPLTPKNSNG--LQRVLQMNQGTLGELLEKDLVNGYSPSHDSAPSSPLSLTASGRMDSFLNALWGLSPKVMVVTEQDSNHNGLTLMERLLESLYFYAALFDCLESTFPRTSLERLKVEKMLFGEEIKNVIACEGFERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLQARRLLQGYNCDGYRIKEENGCVVICWQDRALFSVSAWRCKR 450
[Close]
BLAST of XM_017371828.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VKA1 ((LOW QUALITY PROTEIN: scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_027102885.1}))

HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 362/470 (77.02%), Postives = 409/470 (87.02%), Query Frame = 0
 
Query:    1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
            MFQDDGSSSVTSSP Q  P   +SP LGSPY WLKELKSE+RGLYLIHLLLTCA HVATGSLENAN+  DQISHLA+PDGDTMQRIASYFTEALA+R+LK WPGLYKALHST IS+ SE+++ RKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNA+E  QWRAL+QDLSARPEGPPHLRITGVH  KE+LD+MA +L+E+AEKLDIPFQFNPIVSKLENLD+EKLRVK GEALAISS LQLH LL+  +E  +++ +   +S+G  L +  QM +GTLG+ L+KD++NG+SP +DS SSSP SS A+ +LD FLNALW LSPKIMVV+EQDSNHNG+NLMERLSESLYFYAALFDCLEST  RTS ERLK+EK LFGEE +NIIACEG  RKERHEKLE+WIQR + AGFG V LSYY MLQA+RLLQ+ SCDGY+IKEENG +VICWQDR LFSV AWRC+R
Sbjct:    1 MFQDDGSSSVTSSPLQMFPMMSLSPXLGSPYQWLKELKSEERGLYLIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRISVVSEEVLVRKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQQKEILDQMAHILSEDAEKLDIPFQFNPIVSKLENLDVEKLRVKXGEALAISSVLQLHALLATDEEMRKKSPMVXKSSNGHHLQRVLQMNQGTLGELLEKDLVNGYSPSSDSASSSPLSSNASXKLDSFLNALWXLSPKIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTXSRTSVERLKVEKMLFGEEXKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWRCRR 470
Match NameStatsDescription
A0A068UJK6E-Value: 0.000e+0, PID: 78.51(Uncharacterized protein {ECO:0000313|EMBL:CDP0849... [more]
A0A4S4DZT2E-Value: 0.000e+0, PID: 76.65(Uncharacterized protein {ECO:0000313|EMBL:THG0901... [more]
A0A6P6TMG8E-Value: 0.000e+0, PID: 78.09(scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_0... [more]
A0A2R6P829E-Value: 0.000e+0, PID: 77.92(Scarecrow-like protein {ECO:0000313|EMBL:PSR86801... [more]
A0A7J0HCI1E-Value: 0.000e+0, PID: 78.34(Scarecrow-like 3 {ECO:0000313|EMBL:GFZ20722.1})[more]
A0A5B7AI02E-Value: 0.000e+0, PID: 78.56(Uncharacterized protein {ECO:0000313|EMBL:MPA5561... [more]
A0A5B7AFW5E-Value: 0.000e+0, PID: 78.77(Uncharacterized protein {ECO:0000313|EMBL:MPA5562... [more]
A0A7J0DAG2E-Value: 0.000e+0, PID: 77.49(Scarecrow-like 3 {ECO:0000313|EMBL:GFS30979.1})[more]
A0A5B7AJE6E-Value: 0.000e+0, PID: 79.06(Uncharacterized protein {ECO:0000313|EMBL:MPA5562... [more]
A0A6P6VKA1E-Value: 0.000e+0, PID: 77.02(LOW QUALITY PROTEIN: scarecrow-like protein 3 {EC... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.