Resource Type:
Polypeptide
Name:
XM_017371201.1
Identifier:
XM_017371201.1-protein
Sequence:
MASRLRRRNLSFELLSTGLDDNDDHIAPENNNFYRSTSDPLQGDDAEVLK
SAKRRKKRRNRGGKGKKSLLDCVIAEETVDFGSKSCSSSCVTQTVVFDGV
SESNGGDRAGSSEFLGLKSLKGGGLRQRNVNSGDDIANGGELECVSSKDG
DLRHRNVSCGGDNVANDGELECVSSKDGELRQRNVNHGGNVVNGGELEHV
SLKDGELRQRNVNRDDVVNGGVNSSEYVSLKGGELRQRNVNGGKEEERIV
CEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKL
ESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEK
DRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHL
QARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLY
VVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDE
ALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFK
RFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASM
VFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNL
TFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLK
VMVGMGLQKHATWYVKRCQNRKLHND
Sequence Length:
726
Sequence Checksum:
bc32f403f89e94fccb86d4411110497c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371201.1, derives from mRNA, XM_017371201.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B0E5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62407.1}))
HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0
Identity = 368/511 (72.02%), Postives = 430/511 (84.15%), Query Frame = 0
Match: A0A5B7B0E5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62407.1}))
HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0
Identity = 368/511 (72.02%), Postives = 430/511 (84.15%), Query Frame = 0
Query: 222 VNSSEYVSLKG------GELRQRNVNGGKEEERIVCEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
V E+ L+G G LRQRNVNG GG ++ S +E+ + +++++ G V E NGNV+RKLE+ LDWK+LMAEDPNY +EKSP++YF+EE+Y GNSLR+TT NEK+RERVYDTIFRLPWRCELLI+VGFFVCLDSFLS++TIMP R+L+T W+ L+ RQF+R SAA++SDFGCF+ L CGV LLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLA+CS ++ YW+WRFISDEAL V +SI+HSF+LLAQAITLSTCIVAHNNAL ALLVSNNF+EIKSNVFKRFSKDN+ SMVY+DSVERFHISAF+LF+LAQNILEAE PWFE+FL NA +V+ICE+MIDIIKHSFIAKFNDIKPI FSEFLEDLC+Q LN+Q ENGK+NLTFVPLAPACVVIRVLSP+YAAHLP+SP+ WRLFWI +LSA+TFVML SLK+M+GMGLQKHATWYV RC+ RKLH+D
Sbjct: 137 VMEPEFQKLQGSDGYLVGALRQRNVNGS------------GGVEESMPWIDESAKEETISKEMESAS--GKQRV-EPNGNVVRKLETAESLDWKRLMAEDPNYQFSVEKSPVQYFMEELYIGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSMLTIMPMRILMTFWRLLKTRQFKRPSAADISDFGCFIVLSCGVFLLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLASCSQDNMRYWIWRFISDEALAVAASIVHSFVLLAQAITLSTCIVAHNNALLALLVSNNFSEIKSNVFKRFSKDNIHSMVYFDSVERFHISAFLLFVLAQNILEAEGPWFESFLYNALLVYICEMMIDIIKHSFIAKFNDIKPIAFSEFLEDLCKQTLNIQTENGKKNLTFVPLAPACVVIRVLSPVYAAHLPYSPVPWRLFWIFLLSALTFVMLASLKIMIGMGLQKHATWYVNRCRKRKLHSD 632
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9STK9 ((protein POLLEN DEFECTIVE IN GUIDANCE 1 {ECO:0000313|RefSeq:XP_011070548.1}))
HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 368/497 (74.04%), Postives = 414/497 (83.30%), Query Frame = 0
HSP 2 Score: 39.2762 bits (90), Expect = 3.069e+0
Identity = 33/117 (28.21%), Postives = 53/117 (45.30%), Query Frame = 0
Match: A0A6I9STK9 ((protein POLLEN DEFECTIVE IN GUIDANCE 1 {ECO:0000313|RefSeq:XP_011070548.1}))
HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 368/497 (74.04%), Postives = 414/497 (83.30%), Query Frame = 0
Query: 233 GELRQRNVNGGKEEERIVCEDVKGGELRQRGSVNGSDEEKV---VVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
GELRQRNV + GG +G ++EKV ED A E+NG RKLE E LDWKKLMAEDPNY P+EKSP+KYF+EEMY GN+LR+TT NEK+RERVYDTIFRLPWRCELLIN GFFVC DSFLSL+TIMPTR+++T W+ L+ RQF+R S+AELSDFGCF+ LV GV LLQQ DISLIYHMIRGQG IKLYVVYNVLEIFDKLCQSFGGDV+Q LFNSADGLANCSPE+ +WLWRFISDEAL V SSIIHSFILLAQAITLSTCIVAHNNAL A+LVSNNFAEIKSNVFKR+SKDNV S+VY+DSVERFHISAF++F+LAQNILEAE PWFE+FLCNA +V+ICEVMIDIIKHSFIAKFNDIKPI FSEFLEDLC+Q LNLQ ENGK+NLTFVPLAPACVVIRVL P+YAAHLP+ PL WR+FWI +L AMTFVML SLK+M+G+GL+KHA WYV+RC+ RKLH+D
Sbjct: 99 GELRQRNVGNA----------MNGGSTEMVSEESGKNDEKVKEETGEDRSAGTEISSDQRVELNG---RKLEKEGTLDWKKLMAEDPNYTFPVEKSPMKYFMEEMYAGNALRSTTTIGNEKERERVYDTIFRLPWRCELLINFGFFVCFDSFLSLLTIMPTRIIMTFWRLLKTRQFKRPSSAELSDFGCFVVLVSGVTLLQQADISLIYHMIRGQGIIKLYVVYNVLEIFDKLCQSFGGDVMQALFNSADGLANCSPENMQFWLWRFISDEALAVASSIIHSFILLAQAITLSTCIVAHNNALFAMLVSNNFAEIKSNVFKRYSKDNVHSLVYFDSVERFHISAFVIFVLAQNILEAEGPWFESFLCNALVVYICEVMIDIIKHSFIAKFNDIKPIAFSEFLEDLCKQTLNLQTENGKKNLTFVPLAPACVVIRVLRPVYAAHLPYHPLPWRIFWILVLLAMTFVMLASLKMMIGLGLRKHARWYVRRCERRKLHSD 582
HSP 2 Score: 39.2762 bits (90), Expect = 3.069e+0
Identity = 33/117 (28.21%), Postives = 53/117 (45.30%), Query Frame = 0
Query: 178 GELRQRNVNHGGNVVNGGELEHVSLKDG---ELRQRNVNRDDVVNGGVNSSEYVSLKGGELRQRNVNGGKEEERIVCEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVRE 291
GELRQRNV GN +NGG E VS + G E + D ++S + V L G +L + G + ++++ ED ++ + EE +++T G+ RE
Sbjct: 99 GELRQRNV---GNAMNGGSTEMVSEESGKNDEKVKEETGEDRSAGTEISSDQRVELNGRKLEKE---GTLDWKKLMAEDPNYTFPVEKSPMKYFMEEMYAGNALRSTTTIGNEKERE 209
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AHW8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529824.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 368/511 (72.02%), Postives = 424/511 (82.97%), Query Frame = 0
Match: A0A5J5AHW8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529824.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 368/511 (72.02%), Postives = 424/511 (82.97%), Query Frame = 0
Query: 222 VNSSEYVSLKG------GELRQRNVNGGKEEERIVCEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
V E+ + +G GELRQRNVN V GGE G+ EE + K TE E NGNV+RKLE LDWK+LM EDPNY +EKSP+KYF+EE+ GNSLR+TT NEK+RERVYDTIFRLPWRCELLI+VGFFVCLDSFLSL+TIMP R+L+T W+ ++ RQF+R SAAELSDFGCF+ L CGV LLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLA+CS ++ Y++WRFISDEAL V +SI+HSF+LLAQAITLSTCIVAHNNAL ALLVSNNFAEIKS+VFKRFSKDN+ S+VY+DSVERFHISAF+LF+LAQNILEAE PWFE+FLCNA +V+ICE+MIDIIKHSF+AKFNDIKPI +SEFLEDLC+Q LN+Q ENGK+NLTFVPLAPACVVIRVLSP+YAAHLP+SPL WRLFWI +LSA+TFVM+ SLK+M+GMGLQKHA+WYV RC+ RKLH+D
Sbjct: 136 VTEPEFQNFQGSDGHLSGELRQRNVNAS---------GVGGGEDAMPWIDEGAKEETIS----KETELSSGKQRVEPNGNVVRKLEPAESLDWKRLMTEDPNYKFSVEKSPVKYFLEELNIGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSLLTIMPARILMTFWRLMKIRQFKRPSAAELSDFGCFIVLSCGVTLLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLASCSEDNMRYFIWRFISDEALAVAASIVHSFVLLAQAITLSTCIVAHNNALLALLVSNNFAEIKSSVFKRFSKDNIHSLVYFDSVERFHISAFMLFVLAQNILEAEGPWFESFLCNALLVYICEMMIDIIKHSFVAKFNDIKPIAYSEFLEDLCKQTLNIQTENGKKNLTFVPLAPACVVIRVLSPVYAAHLPYSPLPWRLFWIFLLSALTFVMMASLKIMIGMGLQKHASWYVNRCRKRKLHSD 633
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2S3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62408.1}))
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 359/484 (74.17%), Postives = 418/484 (86.36%), Query Frame = 0
Match: A0A5B7B2S3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62408.1}))
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 359/484 (74.17%), Postives = 418/484 (86.36%), Query Frame = 0
Query: 257 GELRQRGS--------------VNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
G LRQR ++ S +E+ + +++++ G V E NGNV+RKLE+ LDWK+LMAEDPNY +EKSP+KYF+EE+Y GNSLR+TT NEK+RERVYDTIFRLPWRCELLI+VGFFVCLDSFLS++TIMP R+L+T W+ L+ RQF+R SAA++SDFGCF+ L CGV LLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLA+CS ++ YW+WRFISDEAL V +SI+HSF+LLAQAITLSTCIVAHNNAL ALLVSNNF+EIKSNVFKRFSKDN+ SMVY+DSVERFHISAF+LF+LAQNILEAE PWFE+FL NA +V+ICE+MIDIIKHSFIAKFNDIKPI FSEFLEDLC+Q LN+Q ENGK+NLTFVPLAPACVVIRVLSP+YAAHLP+SP+ WRLFWI +LSA+TFVML SLK+M+GMGLQKHATWYV RC+ RKLH+D
Sbjct: 154 GALRQRNVNGSGGGGVEESMPWIDESAKEETISKEMESAS--GKQRV-EPNGNVVRKLETAESLDWKRLMAEDPNYQFSVEKSPVKYFMEELYIGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSMLTIMPMRILMTFWRLLKTRQFKRPSAADISDFGCFIVLSCGVFLLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLASCSQDNMRYWIWRFISDEALAVAASIVHSFVLLAQAITLSTCIVAHNNALLALLVSNNFSEIKSNVFKRFSKDNIHSMVYFDSVERFHISAFLLFVLAQNILEAEGPWFESFLYNALLVYICEMMIDIIKHSFIAKFNDIKPIAFSEFLEDLCKQTLNIQTENGKKNLTFVPLAPACVVIRVLSPVYAAHLPYSPIPWRLFWIFLLSALTFVMLASLKIMIGMGLQKHATWYVNRCRKRKLHSD 634
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B228 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62406.1}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 350/436 (80.28%), Postives = 399/436 (91.51%), Query Frame = 0
Match: A0A5B7B228 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62406.1}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 350/436 (80.28%), Postives = 399/436 (91.51%), Query Frame = 0
Query: 291 EVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
E NGNV+RKLE+ LDWK+LMAEDPNY +EKSP+KYF+EE+Y GNSLR+TT NEK+RERVYDTIFRLPWRCELLI+VGFFVCLDSFLS++TIMP R+L+T W+ L+ RQF+R SAA++SDFGCF+ L CGV LLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLA+CS ++ YW+WRFISDEAL V +SI+HSF+LLAQAITLSTCIVAHNNAL ALLVSNNF+EIKSNVFKRFSKDN+ SMVY+DSVERFHISAF+LF+LAQNILEAE PWFE+FL NA +V+ICE+MIDIIKHSFIAKFNDIKPI FSEFLEDLC+Q LN+Q ENGK+NLTFVPLAPACVVIRVLSP+YAAHLP+SP+ WRLFWI +LSA+TFVML SLK+M+GMGLQKHATWYV RC+ RKLH+D
Sbjct: 199 EPNGNVVRKLETAESLDWKRLMAEDPNYQFSVEKSPVKYFMEELYIGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSMLTIMPMRILMTFWRLLKTRQFKRPSAADISDFGCFIVLSCGVFLLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLASCSQDNMRYWIWRFISDEALAVAASIVHSFVLLAQAITLSTCIVAHNNALLALLVSNNFSEIKSNVFKRFSKDNIHSMVYFDSVERFHISAFLLFVLAQNILEAEGPWFESFLYNALLVYICEMMIDIIKHSFIAKFNDIKPIAFSEFLEDLCKQTLNIQTENGKKNLTFVPLAPACVVIRVLSPVYAAHLPYSPIPWRLFWIFLLSALTFVMLASLKIMIGMGLQKHATWYVNRCRKRKLHSD 634
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B1H1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62405.1}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 359/484 (74.17%), Postives = 417/484 (86.16%), Query Frame = 0
Match: A0A5B7B1H1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA62405.1}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 359/484 (74.17%), Postives = 417/484 (86.16%), Query Frame = 0
Query: 257 GELRQRGS--------------VNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
G LRQR ++ S +E+ + +++++ G V E NGNV+RKLE+ LDWK+LMAEDPNY +EKSP+KYF+EE+Y GNSLR+TT NEK+RERVYDTIFRLPWRCELLI+VGFFVCLDSFLS++TIMP R+L+T W+ L+ RQF+R SAA++SDFGCF+ L CGV LLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLA+CS ++ YW+WRFISDEAL V +SI+HSF+LLAQAITLSTCIVAHNNAL ALLVSNNF+EIKSNVFKRFSKDN+ SMVY+DSVERFHISAF+LF+LAQNILEAE PWFE+FL NA +V+ICE+MIDIIKHSFIAKFNDIKPI FSEFLEDLC+Q LN+Q ENGK+NLTFVPLAPACVVIRVLSP+YAAHLP+SP+ WRLFWI +LSA+TFVML SLKVM+GMGLQKHATWY+ RC+ RKLH D
Sbjct: 154 GALRQRNVNGSGGGGVEESMPWIDESAKEETISKEMESAS--GKQRV-EPNGNVVRKLETAESLDWKRLMAEDPNYQFSVEKSPVKYFMEELYIGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSMLTIMPMRILMTFWRLLKTRQFKRPSAADISDFGCFIVLSCGVFLLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLASCSQDNMRYWIWRFISDEALAVAASIVHSFVLLAQAITLSTCIVAHNNALLALLVSNNFSEIKSNVFKRFSKDNIHSMVYFDSVERFHISAFLLFVLAQNILEAEGPWFESFLYNALLVYICEMMIDIIKHSFIAKFNDIKPIAFSEFLEDLCKQTLNIQTENGKKNLTFVPLAPACVVIRVLSPVYAAHLPYSPIPWRLFWIFLLSALTFVMLASLKVMIGMGLQKHATWYINRCRKRKLHFD 634
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022QN69 ((Uncharacterized protein {ECO:0000313|EMBL:EYU30152.1}))
HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 368/551 (66.79%), Postives = 433/551 (78.58%), Query Frame = 0
HSP 2 Score: 46.9802 bits (110), Expect = 1.312e-2
Identity = 70/202 (34.65%), Postives = 91/202 (45.05%), Query Frame = 0
Match: A0A022QN69 ((Uncharacterized protein {ECO:0000313|EMBL:EYU30152.1}))
HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 368/551 (66.79%), Postives = 433/551 (78.58%), Query Frame = 0
Query: 188 GGNVVNGGELEHVSLKDGELR----QRNVNRDDVV----NGGVNSSEYVSLKGGELRQRNV----NGGKEEERIVCEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
G +++ + +S DG++ V VV +G + + + L GELRQRNV NGG E ++ + G S + ++ + E E E++G RKLE E LDWKKLMAEDPNY LP+EKSP+KYF++EMY GNSLR+TT N+K+RERVYDTIFRLPWRCELLIN GFFVC DSFLSL+TIMPTR+++T W+ L+ RQ +R S+AELSD+GCF+ LV GV LLQQ DISLIYHMIRGQG IKLYVVYNVLEIFDKLCQSFGGDV+Q+LFNSADGLANCS E+ +WLWRF SDE L V SSIIHSF+LLAQAITLSTCIVAHNNAL A+LVSNNFAEIKSNVFKR+SK+NVQS+VY+DSVERFHI AF+LF+LAQNILEAE PWFE+FLCNA +V++CEVMIDIIKHSFIAKFNDIKPI FSEFLEDLC+Q LN+Q ENGK+NL FVPLAPACVVIRVL P+YAAHLP++PL WRLFW+ +L AMTFVML SLK+M+GMGL+KHA WYV+RCQ RKLH D
Sbjct: 57 GKTLLDSSAVSEISAIDGDVSYSCTTSTVTEAAVVPPDLDGESSFAVTLPLVFGELRQRNVGSMANGGGSAEMMMVSEESGC------SKKDDNVKEEIAEKQSGGEEIDSDQKAELSG---RKLEKEGTLDWKKLMAEDPNYTLPVEKSPMKYFMDEMYAGNSLRSTTTLGNDKERERVYDTIFRLPWRCELLINFGFFVCFDSFLSLLTIMPTRIIMTFWRLLRTRQLKRPSSAELSDYGCFVVLVAGVTLLQQADISLIYHMIRGQGIIKLYVVYNVLEIFDKLCQSFGGDVMQSLFNSADGLANCSQENVQFWLWRFFSDEVLAVVSSIIHSFVLLAQAITLSTCIVAHNNALFAMLVSNNFAEIKSNVFKRYSKENVQSLVYFDSVERFHIMAFVLFVLAQNILEAEGPWFESFLCNALVVYVCEVMIDIIKHSFIAKFNDIKPIAFSEFLEDLCKQTLNIQTENGKKNLIFVPLAPACVVIRVLRPVYAAHLPYNPLPWRLFWMLVLFAMTFVMLASLKMMIGMGLRKHARWYVRRCQRRKLHFD 598
HSP 2 Score: 46.9802 bits (110), Expect = 1.312e-2
Identity = 70/202 (34.65%), Postives = 91/202 (45.05%), Query Frame = 0
Query: 1 MASRLRRRNLSFELLSTGLDDNDDHIAPENNNFYRSTSDPLQGDDAEVLKSAKRRKKRRNRGGKGKKSLLDCVIAEETVDFG--SKSCSSSCVTQTVVFDGVSESNGGDRAGSSEFLGLKSLKGGGLRQRNVNSGDDIANGG---ELECVSSKDGDLRHRNVSCGGDNVAND------GELECVSSKDGELRQRNVNHGGNV 191
MA R R LSF++L+ + DD +A + RS SDP GD A S RRKK++ R KGK L ++E + G S SC++S VT+ V D G S F L G LRQRNV S +ANGG E+ VS + G S DNV + G E S + EL R + G +
Sbjct: 1 MALRSGGRKLSFDILA--ISQYDDVVAA--TSLSRSNSDP-HGDGA---SSPTRRKKKKRRSRKGKTLLDSSAVSEISAIDGDVSYSCTTSTVTEAAVVP-------PDLDGESSFAVTLPLVFGELRQRNVGS---MANGGGSAEMMMVSEESG------CSKKDDNVKEEIAEKQSGGEEIDSDQKAELSGRKLEKEGTL 178
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGM9 ((Protein POLLEN DEFECTIVE IN GUIDANCE like {ECO:0000313|EMBL:PSR91025.1}))
HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 355/473 (75.05%), Postives = 411/473 (86.89%), Query Frame = 0
HSP 2 Score: 49.2914 bits (116), Expect = 2.191e-3
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0
Match: A0A2R6PGM9 ((Protein POLLEN DEFECTIVE IN GUIDANCE like {ECO:0000313|EMBL:PSR91025.1}))
HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 355/473 (75.05%), Postives = 411/473 (86.89%), Query Frame = 0
Query: 257 GELRQRGSVNGSDEE-KVVVEDVKAT--ERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLHND 726
GELRQR V G +E V E+ +A+ + S+ ++ NGN +RKLE+ LDW++LM +DP +EKSP+KYF+EEM GNSLR+TT AN+K+RERVYDTIFRLPWRCELLI+VG FVCLDSFLSL+TIMPTR+L+T W+ + R+F+RLSAAELSDFGCF+ L CGV LL+Q DISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLANCSPES+ YW+WRFISDEAL V SSI+HSFILLAQAITLSTCIVAHNNAL ALLVSNNFAEIKSNVFKRFSKDN+ S+VYYDSVERFHISAF+LF+LAQNILEAE PWF +FL NA +V++CE+MIDIIKHSFIAKFNDIKPI +SEFLEDLC+Q LN++ ++GK+NLTFVPLAPACVVIRVL+P+YAA LP+SPL WRLF I +LSAMTFVML SLKVM+GMGL+KHA WY+ RCQ RKLH D
Sbjct: 133 GELRQRTVVGGGEEAVSQVDENTEASGGKETDSSSGKQPNGNGIRKLETVDSLDWRRLMLQDPINVFSVEKSPVKYFMEEMDSGNSLRSTTTLANDKERERVYDTIFRLPWRCELLIDVGVFVCLDSFLSLLTIMPTRILMTVWRLCRIREFKRLSAAELSDFGCFIVLACGVALLEQIDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCSPESKRYWIWRFISDEALAVASSIVHSFILLAQAITLSTCIVAHNNALFALLVSNNFAEIKSNVFKRFSKDNIHSLVYYDSVERFHISAFVLFVLAQNILEAEGPWFGSFLFNALLVYLCEMMIDIIKHSFIAKFNDIKPIAYSEFLEDLCKQTLNIETDSGKKNLTFVPLAPACVVIRVLAPVYAACLPYSPLPWRLFRILLLSAMTFVMLASLKVMIGMGLKKHAKWYINRCQKRKLHTD 605
HSP 2 Score: 49.2914 bits (116), Expect = 2.191e-3
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0
Query: 1 MASRLRRRNLSFELLSTGLDDNDDHIAPENNNFYRSTSDPL--QGDDAEVLKSAK-RRKKRRNRGGKGKKSLLDCVIAEETV 79
MA R R R LSF++L+ + D + + +RS++DPL Q DA K RK R+NRG K KK+ ++C IAE +V
Sbjct: 1 MALRSRNRKLSFDILNATVADGVESV------LHRSSTDPLTRQNGDASAASGPKPSRKNRKNRGSK-KKATIECSIAEGSV 75
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RDD3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8076396.1}))
HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 407/728 (55.91%), Postives = 482/728 (66.21%), Query Frame = 0
Match: A0A5N6RDD3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8076396.1}))
HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 407/728 (55.91%), Postives = 482/728 (66.21%), Query Frame = 0
Query: 1 MASRLRRRNLSFELLSTGLDDNDDHIAPENNNFYRSTSDPLQGDDAEVLKSAKRR-KKRRNRGGKGKKSLLDCVIAEETVDFGSKSCSSSCVTQTVVFDGVSESNGGDRAGSSEFLGLKSLKGGGLRQRNVNSGDDIANGGELECVSSKDGDLRHRNVSCGGDNVAND-GELECVSSKDGELRQRNVNHGGNVVNGGELEHVSLKDGELRQRNVN--RDDVVNGGVNSSEYVSLKGGELRQRNVNGGKEEERIVCEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLH 724
MA R R LSFE+LS +D + YRS SDP+Q AE + K + KKRR+R G +K ++ I E+ + + V VF +N AGSS+ S+ G G R + N E +C+S V C VA + G C ++ E + V G GELRQR+V+ DD V +E S KG E+ +QRG NGS V N + ES LDWK+LMAEDPN +E SP KYF+EEM++GNSLR+TT NEK+RERVYDTIFRLPWRCELLI+VGFFVCLDSFLS++T+MPTR+++T W+ L RQF+ SAAELSDFGCFL + CGV LLQ+TDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQ+F GDVLQTLFNSA+GLA+C PES T+WLWRFI D AL + +SI+HSFILLAQAITLST IVAHNNAL ALLVSNNF+EIKSNVFKRFSKDN+ S+VY+DSVERFHISAF+LF+LAQNILEAE PW E+FL NA MV+ICE+ IDIIKHSFI KFNDIKPI +SEFLEDLC+Q LN+Q E K+NLTFVPLAPACVVIRVL+P+YAAHLP++P WRLFWI +LSAMTFVMLTSLKVM+GMGL+KHA WYVKRC+ R H
Sbjct: 1 MALRSVGRKLSFEILSQSSSLLEDEVL-----VYRSDSDPVQSHVAESKTTEKPKCKKRRHRKGSKRKKAIESAITEDAI-------AERTVDPDSVFSHSESTNTF--AGSSDAF---SILGNGERDFT-----NYTNELESKCMS--------YTVVCEETRVAEESGGSVCRVTEVTEPEVQKVRGEG------------FNFGELRQRSVSGTGDDAAASRVEDNE--SEKGLEV--------------------SSAAKQRGEPNGS-----------------------VVANTLETAES---LDWKRLMAEDPNLGFSVETSPFKYFMEEMHNGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSMLTVMPTRIVMTLWRLLCTRQFKMRSAAELSDFGCFLIMACGVTLLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQNFNGDVLQTLFNSAEGLASCPPESMTFWLWRFIFDLALAMAASIVHSFILLAQAITLSTVIVAHNNALLALLVSNNFSEIKSNVFKRFSKDNIHSLVYFDSVERFHISAFMLFVLAQNILEAEGPWLESFLFNALMVYICEMAIDIIKHSFIGKFNDIKPIAYSEFLEDLCKQTLNIQTEGAKKNLTFVPLAPACVVIRVLTPVYAAHLPYNPFPWRLFWIILLSAMTFVMLTSLKVMIGMGLKKHANWYVKRCRKRNHH 638
BLAST of XM_017371201.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4W5L9 ((Uncharacterized protein {ECO:0000313|EMBL:ESR61364.1}))
HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 347/467 (74.30%), Postives = 404/467 (86.51%), Query Frame = 0
Match: V4W5L9 ((Uncharacterized protein {ECO:0000313|EMBL:ESR61364.1}))
HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 347/467 (74.30%), Postives = 404/467 (86.51%), Query Frame = 0
Query: 258 ELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKLESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEKDRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHLQARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSADGLANCSPESRTYWLWRFISDEALTVTSSIIHSFILLAQAITLSTCIVAHNNALPALLVSNNFAEIKSNVFKRFSKDNVQSMVYYDSVERFHISAFILFILAQNILEAESPWFENFLCNASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQRLNLQMENGKRNLTFVPLAPACVVIRVLSPIYAAHLPHSPLLWRLFWICILSAMTFVMLTSLKVMVGMGLQKHATWYVKRCQNRKLH 724
ELRQR V G+DE + E++ ++ S+ E NG+V+ KLE+ LDWK+LMAEDPNY P+E SPLKYF+EEMY GNSL++TT +EK+R+RVYDTIFRLPWRCELLI+VGFFVC DSFLSL+TIMPTR+L+T W+ L RQF R SAAEL DF CF+ L C V LL+ TDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSA+GLANC+ E+ +W+WRFISD+AL + ++I HSFILLAQAITLSTCIVAHNNAL ALLVSNNFAEIKSNVFKRFSKDN+ S+VY DS+ERFHISAF+LF+LAQNILEAE PWFE+FL NA +VF+CE++IDIIKHSF+AKFNDIKPI +SEFLEDLC+Q LN+Q ENGK+NLTFVPLAPACVVIRVL+P++AA LP +PL WRLFWI +LSAMT+VML SLKVM+GMGLQ+HATWYVKRCQ RK H
Sbjct: 126 ELRQRN-VAGNDEAESREEEISVEKQQQRSS--EANGSVVTKLETAESLDWKRLMAEDPNYMYPVETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATIAHSFILLAQAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKRKHH 589
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B0E5 | E-Value: 0.000e+0, PID: 72.02 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6240... [more] |
| A0A6I9STK9 | E-Value: 3.069e+0, PID: 74.04 | (protein POLLEN DEFECTIVE IN GUIDANCE 1 {ECO:00003... [more] |
| A0A5J5AHW8 | E-Value: 0.000e+0, PID: 72.02 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8529... [more] |
| A0A5B7B2S3 | E-Value: 0.000e+0, PID: 74.17 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6240... [more] |
| A0A5B7B228 | E-Value: 0.000e+0, PID: 80.28 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6240... [more] |
| A0A5B7B1H1 | E-Value: 0.000e+0, PID: 74.17 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6240... [more] |
| A0A022QN69 | E-Value: 1.312e-2, PID: 66.79 | (Uncharacterized protein {ECO:0000313|EMBL:EYU3015... [more] |
| A0A2R6PGM9 | E-Value: 2.191e-3, PID: 75.05 | (Protein POLLEN DEFECTIVE IN GUIDANCE like {ECO:00... [more] |
| A0A5N6RDD3 | E-Value: 0.000e+0, PID: 55.91 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8076... [more] |
| V4W5L9 | E-Value: 0.000e+0, PID: 74.30 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6136... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |