Resource Type:
Polypeptide
Name:
XM_017371753.1
Identifier:
XM_017371753.1-protein
Sequence:
MKLFSSSTSSNPSNLTIFLPKQTPSPSKLLIPTPFKPIHSKPPFHTLSAH
ESSSSLQEPKASTELFSEDKDKLNEEIRASRQSLEELLVVRRPVMDSLVE
DEEEEDEEEEGLSSVDASLAKFAKKVAFFEPERVESREERPLVVNLDLAL
YRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEAR
SVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVA
AWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFE
QARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKN
RFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYST
ANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINS
ASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLE
EDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNI
DQNSYYKATNFDDISSIKEESSGFSTDLVSGSGFELDTFIRGKLSLDPSR
LDIMLERTFQNRVSGNANSSRIWKRSSKKLANDPRQ
Sequence Length:
636
Sequence Checksum:
edeee2052a80514d8088df23e6cb6ff4
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371753.1, derives from mRNA, XM_017371753.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5APA0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531227.1}))
HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 441/638 (69.12%), Postives = 515/638 (80.72%), Query Frame = 0
Match: A0A5J5APA0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531227.1}))
HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 441/638 (69.12%), Postives = 515/638 (80.72%), Query Frame = 0
Query: 16 TIFLPKQTPSPSKLLIPTPFKPIHSKPP--FHTLSAHESSSSL--QEPKASTELFSEDKDK-LNEEIRA-SRQSLEELLVVRRPVMDSLVEDEEEEDEEEEGLSS----VDASLAKFAKKVAFFEPERVESR-EERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCL------QAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNI--DQNSYYK---ATNFDDI-----SSIKEESSGFSTDLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSS--RIWK 624
T+F P Q P+ SK K +HS P LS+HESSS L ++P++S ED + ++IR S +S +ELLV+RRPVM+ ++E ++ E E SS +DA L+KFAKK+ FEPERV+S EE+PL+VNLDLALYRAKVL RN++Y+EA+ +LQKCI+ W EDGR YVALGK+ +KQSK EAR+VYEKGCQATQGENAYIWQCWAVLE KMGNIR+AR+LFDAATVADKKH+AAWHGWAVLELK GNI KARNLLGK LKYCG NEY+YQTLA+LEA+ANR+EQARYLF QATKCNPKSCASWLAWAQ+E QQ NN ARK+FEKAVQASPKNRFAWHVWGVFE N GN+D RKL KIGHA+NPRDPVLLQSLALLEYKYSTANL+RVLF RASELDPRHQPVWIAWGWMEWKEGNI TARELYQ+ALSI+S+SESAARCL QAWGVLEQR GNLSAARRLFRSS+NINSQSY+TWMTWASLEEDQGN RAEEIR+LYFQQRTE+VDDASWVMG FDIIDPAIDS+KRLLN DQ+ YYK +++ +I + I EES+G ++ + GF+LDTFI+ KLSLDPS+LDI +E + Q +++ S R+W+
Sbjct: 15 TLFSPSQNPNISKFHFKFFLKTLHSSPCPLLPPLSSHESSSPLLQEKPQSSESSVKEDANNGPAKDIRTTSNESFDELLVIRRPVMELSGQEEADDGETIENRSSSSSPIDAGLSKFAKKMPIFEPERVKSSSEEKPLIVNLDLALYRAKVLARNYQYEEADRILQKCIHYWSEDGRPYVALGKMLSKQSKTAEARAVYEKGCQATQGENAYIWQCWAVLEKKMGNIRRARELFDAATVADKKHIAAWHGWAVLELKQGNIMKARNLLGKALKYCGGNEYVYQTLALLEAQANRYEQARYLFSQATKCNPKSCASWLAWAQLEMQQENNFTARKLFEKAVQASPKNRFAWHVWGVFEANLGNIDLARKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWKEGNIATARELYQRALSIDSSSESAARCLQSCLVSQAWGVLEQRVGNLSAARRLFRSSVNINSQSYITWMTWASLEEDQGNPVRAEEIRNLYFQQRTEVVDDASWVMGFFDIIDPAIDSVKRLLNFDRDQDLYYKPKGSSSSRNIPRPNENGIGEESTGPTS--YNADGFDLDTFIQEKLSLDPSKLDIHMEASSQKKLAPRKVKSPRRVWR 650
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HP52 (Suf domain-containing protein {ECO:0000259|Pfam:PF05843})
HSP 1 Score: 867.84 bits (2241), Expect = 0.000e+0
Identity = 432/604 (71.52%), Postives = 494/604 (81.79%), Query Frame = 0
Match: A0A2G9HP52 (Suf domain-containing protein {ECO:0000259|Pfam:PF05843})
HSP 1 Score: 867.84 bits (2241), Expect = 0.000e+0
Identity = 432/604 (71.52%), Postives = 494/604 (81.79%), Query Frame = 0
Query: 15 LTIFLPKQTPSPSKLLIPTPFKPIHSKPP---FHTLSAHESSSS---LQE-PKASTELFS----EDKDKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDEEEEGLSS-VDASLAKFAKKVAFFEPERVES-REERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYKATNFDDISSIKEESSGFSTDLVSGSGFELDTFIRGKLSLDPSRLDIML 605
TIF Q P+ SK P K S P ++ H+SSSS LQE P+ S + E+++ +EEI+ +++SLEELLVVRRP M+ EDE+ E+ + +SS +D L++FAKK+ FEPERVES EE+PL+VNLDLALYRAK+L RN+RY+EAEE+L+KCI WPEDGR YVALG+ +KQSK NEAR+VYEKGCQATQGEN+YIWQCWAVLENKMGN R+AR LFDAATVADK+HVAAWHGWAVLE+K GNIKKARNLLGKG+K+CG NEYIYQTLA+LE KA R+EQARYLFRQATKCNPKSCASWLAWAQ+EAQ NN AR +FEKAVQASPKNRFAWHVWGVFE+N GNVD RKL K+GHA+NPRDPVLLQSLALLEY+YSTANLARV+F RASELDPRHQPVWIAWGWMEWKEGN+ TARELYQKALSI+S SESAARCLQAWGVLEQR GN+SAARRLFRSSLNINSQSYVTWMTWASLEEDQGN+ RAEEIR+LYFQQRTEIVDDASW+MG DIIDPAIDSIKRLLN+++ D S + E SG + + S S F LD FIR KLSLDPS+LD+ L
Sbjct: 14 FTIFSSSQNPNTSKFHFIAPLKAPLSTPSNRILLSIHCHDSSSSPPVLQEKPQNSASKYEGTEIEEENGFDEEIKNAKKSLEELLVVRRPEMEFSDEDEKTENGKNLEVSSGIDEGLSRFAKKMPIFEPERVESGSEEKPLLVNLDLALYRAKILARNYRYEEAEEILRKCIKYWPEDGRPYVALGRTLSKQSKMNEARAVYEKGCQATQGENSYIWQCWAVLENKMGNTRRARGLFDAATVADKRHVAAWHGWAVLEMKQGNIKKARNLLGKGIKFCGGNEYIYQTLALLEVKAKRYEQARYLFRQATKCNPKSCASWLAWAQLEAQLENNHAARSLFEKAVQASPKNRFAWHVWGVFESNLGNVDLARKLLKVGHAVNPRDPVLLQSLALLEYRYSTANLARVIFKRASELDPRHQPVWIAWGWMEWKEGNLSTARELYQKALSIDSTSESAARCLQAWGVLEQRVGNVSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEIVDDASWIMGFLDIIDPAIDSIKRLLNLEKAK--------DSSESEVEQSGNNNTIGSESEFNLDKFIREKLSLDPSKLDVQL 609
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SYL4 ((Uncharacterized protein {ECO:0000313|EMBL:CBI22884.3}))
HSP 1 Score: 866.685 bits (2238), Expect = 0.000e+0
Identity = 438/623 (70.30%), Postives = 496/623 (79.61%), Query Frame = 0
Match: D7SYL4 ((Uncharacterized protein {ECO:0000313|EMBL:CBI22884.3}))
HSP 1 Score: 866.685 bits (2238), Expect = 0.000e+0
Identity = 438/623 (70.30%), Postives = 496/623 (79.61%), Query Frame = 0
Query: 14 NLTIFLPKQTPSPSKLLIPTPFKPIHSKPPFHTL---SAHESSSSLQEPKASTELFSEDKDKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEE---EDEEEEGLSS--VDASLAKFAKKVAFFEPERVE-SREERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYKATNFD-DISSIKEESSGF----------STDLVSGSGFELDTFIRGKLSLDPSRLDIML---ERTFQNRV 613
N +++ P Q PS SK P P+HS TL ++ +SSS L E K + F + QS E+L VRRP+ + +D+E +D +E+ SS +DA LA+FAKK+ FEP+R E S EERPL+VNLDLALYRAKVL RN++++EAE++LQKCIY WPEDGR YVALGKI +KQSK +EAR+VYEKGCQATQGEN YIWQCWAVLENKMGNIR+ARDLFDAATVADK+HVAAWHGWAVLELK GNIKKAR+LL KGLKY G NEYIYQTLA+LEAKANR EQARYLF+QATKCNPKSCASWLAWAQ+E QQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN D GRKL KIGHA+NPRDPVLLQSLALLEYKYSTANL+RVLF RASELDPRHQPVWIAWGWMEWKEGNI TARE+YQ+ALSI+S +ESAARCLQAWGVLE+RAGNLSAARRLFRSSLNINSQSY+TWMTWAS EE+QGNA RAEEIRDLYFQQRTE+VDDASWVMG DIIDPA+DSIKRLLN+DQNSYY+ + +I E+SSG S D S +GF LD FIR KLSLDPS LD+ + E T RV
Sbjct: 15 NFSLYSPSQNPSSSKFSFKVPIVPLHSSLSPLTLPPCASKDSSSPLLEQKPHSSGFGSEP-----------QSPPEVLTVRRPMKEYSGDDDESSNGDDVDEDTFSSSPIDAGLAEFAKKLPMFEPQRAELSSEERPLLVNLDLALYRAKVLARNYQFEEAEKILQKCIYYWPEDGRPYVALGKILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWKEGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYITWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLDQNSYYRIPDSSRNIPGANEDSSGPGPGPSSGNPDSKDTASENGFNLDAFIREKLSLDPSNLDVQMQTHETTVPRRV 626
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D178 ((Uncharacterized protein {ECO:0000313|EMBL:THF95969.1}))
HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 445/658 (67.63%), Postives = 504/658 (76.60%), Query Frame = 0
Match: A0A4S4D178 ((Uncharacterized protein {ECO:0000313|EMBL:THF95969.1}))
HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 445/658 (67.63%), Postives = 504/658 (76.60%), Query Frame = 0
Query: 15 LTIFLPKQTPSPSKLL-IPTPFKPI------------HSKPPFHTLSAHESSSSLQEPKASTELFSEDKDKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDEEEEGLSS---VDASLAKFAKKVAFFEPERVE-SREERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFE-----------KAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYKATNFD-DISSIK---EESSGFSTDLVSG----SGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANS-SRIWKRSSKKLANDPR 635
T+F Q P+PSK P K + H P H +S +S + D+D N +IR +++SLEELLVVRRPVM+ ED +DE LSS +D L++FA+K+ FEPERVE S ++PLVVNLDLALYRAKVL R+FRY EAE+LLQKCI WPEDGR YVALGKI +KQSK EAR+VYEKGCQATQGENAYIWQCWAVLENK+GN+R+AR+LFDAATVADK+H+AAWHGWAVLELK GNIKKARNLLGKGLKYCG NEYIYQTLA+LE KA R+EQARYLF+QATK NPKSCASWLAWAQ+E Q+ NN A+++FE KAVQASPKNRFAWHVWGVFE N+GN+D GRKL KIGHA+NPRDPVLLQSLALLEYKYSTAN ARVLF RASELDPRHQPVWIAWGWMEWKEGNI TARELYQKALSINS +ESAARCLQAWGVLEQR GNLSAAR LFRSSLNINSQSYVTWMTWAS EEDQGN+ RAEEIR+LYFQQRTEIVDDASWVMG+ DIIDPA DSIKR LN+DQNSYYK + DI+ EES+ S+D + S F+LD FI +LSLDPS+LDI+LERT QN V S R+W+ + P+
Sbjct: 19 FTLFSTSQNPNPSKFHSFKVPIKTLLPRPLLPPPLSSHQPPLLH--ENPQSFNSTATGRGGDGGDENDEDGGNGDIRTAKESLEELLVVRRPVMEVSEEDGGGDDE----LSSSAIIDVGLSEFARKMPIFEPERVELSSGDKPLVVNLDLALYRAKVLARSFRYNEAEKLLQKCINTWPEDGRPYVALGKILSKQSKTAEARAVYEKGCQATQGENAYIWQCWAVLENKIGNVRRARELFDAATVADKRHIAAWHGWAVLELKQGNIKKARNLLGKGLKYCGGNEYIYQTLALLEVKATRYEQARYLFKQATKSNPKSCASWLAWAQLEMQRENNGTAQQLFEMCNTFLSSKLQKAVQASPKNRFAWHVWGVFEANRGNIDFGRKLLKIGHAVNPRDPVLLQSLALLEYKYSTANYARVLFKRASELDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINSTTESAARCLQAWGVLEQRVGNLSAARSLFRSSLNINSQSYVTWMTWASFEEDQGNSVRAEEIRNLYFQQRTEIVDDASWVMGLLDIIDPAFDSIKRFLNLDQNSYYKVNDTSRDIAGANDKGEESASPSSDYNNAESTESSFDLDAFILERLSLDPSKLDILLERTSQNPVQKKTRSLRRVWRLEDRTTTTLPK 670
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2ZGV3 ((Uncharacterized protein {ECO:0000313|EMBL:PHT81145.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 438/668 (65.57%), Postives = 520/668 (77.84%), Query Frame = 0
Match: A0A2G2ZGV3 ((Uncharacterized protein {ECO:0000313|EMBL:PHT81145.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 438/668 (65.57%), Postives = 520/668 (77.84%), Query Frame = 0
Query: 6 SSTSSNPSNLTIFLPKQTPSPSKLLIPTPFK---PIHSKPPFHTLSAHESSSSLQ------EPKASTELFS-EDK---DKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDEE--------------EEGLSSV----DASLAKFAKKVAFFEPERVES-REERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYK-------ATNFDDISSIKEESSGFST------DLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSSRIWKRSSK 628
S TS + SN T+F Q +PSK + +PF+ P S P L + E SSS EP S+ F +D+ D++ +EI +++SLEELLVVRRPV + ED +E+ EE EE LSS+ DA L KFAKKV FEP R+ES E+PL VNLDLALY+AK+L R F+Y +AE++L++CI WPEDGRSYVALGKI +KQSK NEAR+VYEKGCQATQGEN YIWQCWA+LEN+MGN+R+AR+LFDAATVADKKH+AAWHGWAVLEL+ GNIKKARNLLGKGLK+CG NEY+YQTLA+LEAKA R+E+ARYLF+QAT+CN KSCASWLAWAQ+EAQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN++QGRKL IGH +NPRDPVLLQSLAL+EYK STANLARVLF RAS+LDPRHQPVWIAWGWMEWKEGNI TARELYQKALSIN+ +ESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSY+TWMTWA+LEEDQGN+ RAEEIR+LYFQQRTE+VDD SW+MG D+ DPAIDSIKRLLN+DQNSYYK + DD EES+G S+ ++ +GSGF+LD FI LSLDPS+L++ L + ++ + +S +W+ S+K
Sbjct: 5 SFTSPSSSNFTLFYHSQNQNPSKFHVFSPFRTSQPSPSHPILPPLCSRELSSSSPLLEEKPEPSQSSSKFDPQDRLYNDEVADEISTTKKSLEELLVVRRPVKEPYGEDGDEKGEEISEVEDSQERNDLQEEQLSSLSFPLDAGLKKFAKKVPIFEPSRLESGSAEKPLKVNLDLALYKAKILARKFQYADAEKILEQCIDVWPEDGRSYVALGKILSKQSKLNEARAVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKHIAAWHGWAVLELQQGNIKKARNLLGKGLKFCGGNEYVYQTLALLEAKAKRYERARYLFKQATRCNRKSCASWLAWAQLEAQLENNRAARQLFEKAVQASPKNRFAWHVWGVFEANLGNINQGRKLLTIGHMVNPRDPVLLQSLALIEYKNSTANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINATTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSVRAEEIRNLYFQQRTEVVDDESWIMGFLDVFDPAIDSIKRLLNLDQNSYYKVKESTSDTISGDDAERSTEESAGPSSGNVNDNNIDAGSGFDLDDFICVMLSLDPSKLEVQLATSLKDPPNIARTTSGVWRPSTK 672
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8GW31 ((protein high chlorophyll fluorescent 107 {ECO:0000313|RefSeq:XP_016572358.1, ECO:0000313|RefSeq:XP_016572359.1}))
HSP 1 Score: 864.374 bits (2232), Expect = 0.000e+0
Identity = 437/670 (65.22%), Postives = 520/670 (77.61%), Query Frame = 0
Match: A0A1U8GW31 ((protein high chlorophyll fluorescent 107 {ECO:0000313|RefSeq:XP_016572358.1, ECO:0000313|RefSeq:XP_016572359.1}))
HSP 1 Score: 864.374 bits (2232), Expect = 0.000e+0
Identity = 437/670 (65.22%), Postives = 520/670 (77.61%), Query Frame = 0
Query: 6 SSTSSNPSNLTIFLPKQTPSPSKLLIPTPFK---PIHSKPPFHTLSAHESSSSLQ------EPKASTELFS-EDK---DKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDEE-------------EEGLSS-----VDASLAKFAKKVAFFEPERVES-REERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYK-------ATNFDDISSIKEESSGFST------DLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSSRIWKRSSKKL 630
S TS + SN T+F Q +PSK + +PF+ P S P L + E SSS EP S+ F +D+ D++ +EI +++SLEELLVVRRPV + ED +E+ EE +EG S +DA L KFAKKV FEP R+ES E+PL VNLDLALY+AK+L R F+Y +AE++L++CI WPEDGRSYVALGKI +KQSK NEAR+VYEKGCQATQGEN YIWQCWA+LEN+MGN+R+AR+LFDAATVADKKH+AAWHGWAVLEL+ GNIKKARNLLGKGLK+CG NEY+YQTLA+LEAKA R+E+ARYLF+QAT+CN KSCASWLAWAQ+EAQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN++QGRKL IGH +NPRDPVLLQSLAL+EYK STANLARVLF RAS+LDPRHQPVWIAWGWMEWKEGNI TARELYQKALSIN+ +ESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSY+TWMTWASLEEDQGN+ RAEEIR+LYFQQRTE+VDD SW+MG D+ DPAIDSIKRLLN+DQNSYYK + DD EES+G S+ ++ +GSGF+LD FI LSLDPS+L++ L + ++ + +S +W+ S+K +
Sbjct: 5 SFTSPSSSNFTLFYHSQNQNPSKFHVFSPFRTSQPSPSHPILPPLCSRELSSSSPLLEEKPEPSQSSSKFDPQDRLYNDEVADEISTTKKSLEELLVVRRPVKEPYGEDGDEKGEEIREVEDSQERNDLQEGQPSSLSFPLDAGLKKFAKKVPIFEPRRLESGSAEKPLKVNLDLALYKAKILARKFQYADAEKILEQCIDVWPEDGRSYVALGKILSKQSKLNEARAVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKHIAAWHGWAVLELQQGNIKKARNLLGKGLKFCGGNEYVYQTLALLEAKAKRYERARYLFKQATRCNRKSCASWLAWAQLEAQLENNRAARQLFEKAVQASPKNRFAWHVWGVFEANLGNINQGRKLLTIGHMVNPRDPVLLQSLALIEYKNSTANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINATTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDESWIMGFLDVFDPAIDSIKRLLNLDQNSYYKVKESTSDTISGDDAERSTEESAGPSSGNVNDNNIDAGSGFDLDDFICVMLSLDPSKLEVQLATSLKDPPNIARTTSGVWRPSTKTV 674
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1ATQ9 ((Pre-mRNA splicing factor {ECO:0000313|EnsemblPlants:PGSC0003DMT400030052}))
HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0
Identity = 435/665 (65.41%), Postives = 519/665 (78.05%), Query Frame = 0
Match: M1ATQ9 ((Pre-mRNA splicing factor {ECO:0000313|EnsemblPlants:PGSC0003DMT400030052}))
HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0
Identity = 435/665 (65.41%), Postives = 519/665 (78.05%), Query Frame = 0
Query: 7 STSSNPSNLTIFLPKQT--PSPSKLLIPTPFKPIHSKPPFHTLSAHESSSSLQEPK-----ASTELFSEDK----DKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDE---------------EEEGLSS---VDASLAKFAKKVAFFEPERVESRE-ERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYK-------ATNFDDISSIKEESSGFST------DLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSSRIWKRSSK 628
S + NPS + P +T PSPS ++P P+ S+ P SSS L E K +S++ +D+ D++ +EI +++SLEELLVVRRPV D VE+++E+ E EE+ SS +DA L KFAKKV FEP R+ES E+PL VNLDLALY+AK+L R F+Y +AE++LQ+CI WPEDGRSYVALGKI +KQSK NEAR+VYEKGCQATQGEN YIWQCWA+LEN+MGN+R+AR+LFDAATVADKKH+AAWHGWAVLELK GNIKKARNLLGKGLK+CG NEY+YQTLA+LEAKA R+E+ARYLF+QAT+CN KSCASWLAWAQ+EAQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN+DQGRKL IGH +NPRDPVLLQSL L+EYK S+ANLARVLF RAS+LDPRHQPVWIAWGWMEWKEGNI TARELYQKALSINS +ESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSY+TWMTWA+LEEDQGN+ RAEEIR+LYFQQRTE+VDD SW+MG D+IDPAIDSIKRLLN+DQNSYYK T DD+ EES+ S+ ++ +GSGF+LD FIR LSLDPS+L++ L + ++ ++ +W+ ++K
Sbjct: 20 SQNHNPSKFHVSSPFRTSQPSPSHPILP----PLCSREP-------SSSSPLLEEKPETSQSSSKFDPQDRLSYNDEVADEISTTKKSLEELLVVRRPVKDPYVENDDEKGEAVSNFEDSQERNDLLEEQPSSSSFPLDAGLKKFAKKVPIFEPSRLESDSGEKPLKVNLDLALYKAKILARKFQYADAEKILQQCIDVWPEDGRSYVALGKILSKQSKLNEARTVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKHIAAWHGWAVLELKQGNIKKARNLLGKGLKFCGGNEYVYQTLALLEAKAKRYERARYLFKQATRCNRKSCASWLAWAQLEAQLENNRTARQLFEKAVQASPKNRFAWHVWGVFEANLGNIDQGRKLLTIGHMVNPRDPVLLQSLGLIEYKNSSANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINSTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSIRAEEIRNLYFQQRTEVVDDESWIMGFLDVIDPAIDSIKRLLNLDQNSYYKVKESTSNTTAGDDVEGSTEESASPSSANVNDNNIDTGSGFDLDGFIRVMLSLDPSKLEVQLTASLKDPPKIARTTNGVWRPATK 673
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CEN6 ((Uncharacterized protein {ECO:0000313|EMBL:PHU17179.1}))
HSP 1 Score: 860.907 bits (2223), Expect = 0.000e+0
Identity = 436/668 (65.27%), Postives = 519/668 (77.69%), Query Frame = 0
Match: A0A2G3CEN6 ((Uncharacterized protein {ECO:0000313|EMBL:PHU17179.1}))
HSP 1 Score: 860.907 bits (2223), Expect = 0.000e+0
Identity = 436/668 (65.27%), Postives = 519/668 (77.69%), Query Frame = 0
Query: 6 SSTSSNPSNLTIFLPKQTPSPSKLLIPTPFK---PIHSKPPFHTLSAHESSSSLQ------EPKASTELFS-EDK---DKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDEE--------------EEGLSSV----DASLAKFAKKVAFFEPERVES-REERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYK-------ATNFDDISSIKEESSGFST------DLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSSRIWKRSSK 628
S TS + SN T+F Q+ +PSK + +PF+ P + P L + E SSS EP S+ F +D+ D++ +EI +++SLEELLVVRRPV + ED +E+ EE EE SS+ DA L KFAKKV FEP R+ES E+PL VNLDLALY+AK+L R F+Y +AE++L +CI WPEDGRSYVALGKI +KQSK NEAR+VYEKGCQATQGEN YIWQCWA+LEN+MGN+R+AR+LFDAATVADKKH+AAWHGWAVLEL+ GNIKKARNLLGKGLK+CG NEY+YQTLA+LEAKA R+E+ARYLF+QAT+CN KSCASWLAWAQ+EAQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN++QGRKL IGH +NPRDPVLLQSLAL+EYK STANLARVLF RAS+LDPRHQPVWIAWGWMEWKEGNI TARELYQKALSIN+ +ESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSY+TWMTWA+LEEDQGN+ RAEEIR+LYFQQRTE+VDD SW+MG D+ DPAIDSIKRLLN+DQNSYYK + DD EES+G S+ ++ +GSGF+LD FI LSLDPS+L++ L + ++ + +S +W+ S+K
Sbjct: 5 SFTSPSSSNFTLFYHSQSQNPSKFHVFSPFRTSQPSPAHPILPPLCSRELSSSSPLLEEKPEPSQSSSKFDPQDRLSNDEVADEISTTKKSLEELLVVRRPVKEPYGEDGDEKGEEISEVEDSQERNNLQEEQPSSLSFPLDAGLKKFAKKVPIFEPSRLESGSAEKPLKVNLDLALYKAKILARKFQYADAEKILGQCIDVWPEDGRSYVALGKILSKQSKLNEARAVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKHIAAWHGWAVLELQQGNIKKARNLLGKGLKFCGGNEYVYQTLALLEAKAKRYERARYLFKQATRCNRKSCASWLAWAQLEAQLENNRAARQLFEKAVQASPKNRFAWHVWGVFEANLGNINQGRKLLTIGHMVNPRDPVLLQSLALIEYKNSTANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINATTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSVRAEEIRNLYFQQRTEVVDDESWIMGFLDVFDPAIDSIKRLLNLDQNSYYKVKESTSDTISGDDAERSTEESAGPSSGNVNDNNIDAGSGFDLDDFICVMLSLDPSKLEVQLATSLKDPPNIARTTSGVWRPSTK 672
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IS07 ((Putative psbB mRNA maturation factor Mbb1, chloroplastic-like {ECO:0000313|EMBL:JAP35146.1}))
HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 434/665 (65.26%), Postives = 517/665 (77.74%), Query Frame = 0
Match: A0A0V0IS07 ((Putative psbB mRNA maturation factor Mbb1, chloroplastic-like {ECO:0000313|EMBL:JAP35146.1}))
HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 434/665 (65.26%), Postives = 517/665 (77.74%), Query Frame = 0
Query: 7 STSSNPSNLTIFLPKQT--PSPSKLLIPTPFKPIHSKPPFHTLSAHESSSSLQEPK-----ASTELFSEDK----DKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDE---------------EEEGLSS---VDASLAKFAKKVAFFEPERVESRE-ERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYK-------ATNFDDISSIKEESSGFST------DLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSSRIWKRSSK 628
S + NPS + P +T PSPS ++P P+ S+ P SSS L E K +S++ +D+ D++ +EI +++SLEELLVVRRP D VE++ E+ E EE+ SS +DA L KFAKKV FEP R+ES E+PL VNLDLALY+AK+L R F+Y +AE++LQ+CI WPEDGRSYVALGKI +KQSK NEAR+VYEKGCQATQGEN YIWQCWA+LEN+MGN+R+AR+LFDAATVADKKH+AAWHGWAVLELK GNIKKARNLLGKGLK+CG NEY+YQTLA+LEAKA R+E+ARYLF+QAT+CN KSCASWLAWAQ+EAQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN+DQGRKL IGH +NPRDPVLLQSL L+EYK S+ANLARVLF RAS+LDPRHQPVWIAWGWMEWKEGNI TARELYQKALSINS +ESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSY+TWMTWA+LEEDQGN+ RAEEIR+LYFQQRTE+VDD SW+MG D+IDPAIDSIKRLLN+DQNSYYK T DD+ EES+ S+ ++ +GSGF+LD FIR LSLDPS+L++ L + ++ ++ +W+ ++K
Sbjct: 20 SQNHNPSKFHVSAPFRTSQPSPSHPILP----PLCSREP-------SSSSPLLEEKPETSQSSSKFDPQDRLSYNDEVADEISTTKKSLEELLVVRRPXKDPYVENDXEKGEAVSNFEDSQERNDLLEEQPSSSSFPLDAGLKKFAKKVPIFEPSRLESDSGEKPLKVNLDLALYKAKILARKFQYADAEKILQQCIDVWPEDGRSYVALGKILSKQSKLNEARTVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKHIAAWHGWAVLELKQGNIKKARNLLGKGLKFCGGNEYVYQTLALLEAKAKRYERARYLFKQATRCNRKSCASWLAWAQLEAQLENNRTARQLFEKAVQASPKNRFAWHVWGVFEANLGNIDQGRKLLTIGHMVNPRDPVLLQSLGLIEYKNSSANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINSTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSIRAEEIRNLYFQQRTEVVDDESWIMGFLDVIDPAIDSIKRLLNLDQNSYYKIKESTSNTTAGDDVEGSTEESASPSSANVNDNNIDTGSGFDLDDFIRVMLSLDPSKLEVQLTTSLKDPPKIARTTNGVWRPATK 673
BLAST of XM_017371753.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2X9G1 ((Uncharacterized protein {ECO:0000313|EMBL:PHT54110.1}))
HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 438/668 (65.57%), Postives = 520/668 (77.84%), Query Frame = 0
Match: A0A2G2X9G1 ((Uncharacterized protein {ECO:0000313|EMBL:PHT54110.1}))
HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 438/668 (65.57%), Postives = 520/668 (77.84%), Query Frame = 0
Query: 6 SSTSSNPSNLTIFLPKQTPSPSKLLIPTPFK---PIHSKPPFHTLSAHESSSSLQ------EPKASTELFS-EDK---DKLNEEIRASRQSLEELLVVRRPVMDSLVEDEEEEDEE--------------EEGLSSV----DASLAKFAKKVAFFEPERVES-REERPLVVNLDLALYRAKVLGRNFRYQEAEELLQKCIYKWPEDGRSYVALGKIYNKQSKANEARSVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARDLFDAATVADKKHVAAWHGWAVLELKAGNIKKARNLLGKGLKYCGKNEYIYQTLAMLEAKANRFEQARYLFRQATKCNPKSCASWLAWAQVEAQQGNNIVARKIFEKAVQASPKNRFAWHVWGVFETNQGNVDQGRKLFKIGHALNPRDPVLLQSLALLEYKYSTANLARVLFIRASELDPRHQPVWIAWGWMEWKEGNIDTARELYQKALSINSASESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNATRAEEIRDLYFQQRTEIVDDASWVMGVFDIIDPAIDSIKRLLNIDQNSYYKA--TNFDDISS-----IKEESSGFST------DLVSGSGFELDTFIRGKLSLDPSRLDIMLERTFQNRVSGNANSSRIWKRSSK 628
S TS + SN T+F Q +PSK + +PF+ P S P L + E SSS EP S+ F +D+ D++ +EI +++SLEELLVVRRPV + ED +E+ EE EE SS+ DA L KFAKKV FEP R+ES E+PL VNLDLALY+AK+L R F+Y +AE++L++CI WPEDGRSYVALGKI +KQSK NEAR+VYEKGCQATQGEN YIWQCWA+LEN+MGN+R+AR+LFDAATVADKKH+AAWHGWAVLEL+ GNIKKARNLLGKGLK+CG NEY+YQTLA+LEAKA R+E+ARYLF+QAT+CN KSCASWLAWAQ+EAQ NN AR++FEKAVQASPKNRFAWHVWGVFE N GN++QGRKL IGH +NPRDPVLLQSLAL+EYK STANLARVLF RAS+LDPRHQPVWIAWGWMEWKEGNI TARELYQKALSIN+ +ESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSY+TWMTWA+LEEDQGN+ RAEEIR+LYFQQRTE+VDD SW+MG D+ DPAIDSIKRLLN+DQNSYYK + D IS EES+G S+ ++ +GSGF+LD FI LSLDPS+L++ L + ++ + +S +W+ S+K
Sbjct: 5 SFTSPSGSNFTLFYHSQNQNPSKFHVFSPFRTSQPSPSHPILPPLCSRELSSSSPLLEEKPEPSQSSSKFDPQDRLYNDEVADEISTTKKSLEELLVVRRPVKEPYGEDGDEKGEEISEVEDSQERNGLQEEQPSSLSFPLDAGLKKFAKKVPIFEPSRLESGSAEKPLKVNLDLALYKAKILARKFQYADAEKILEQCIDVWPEDGRSYVALGKILSKQSKLNEARAVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKHIAAWHGWAVLELQQGNIKKARNLLGKGLKFCGGNEYVYQTLALLEAKAKRYERARYLFKQATRCNRKSCASWLAWAQLEAQLENNRAARQLFEKAVQASPKNRFAWHVWGVFEANLGNINQGRKLLTIGHMVNPRDPVLLQSLALIEYKNSTANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINATTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSVRAEEIRNLYFQQRTEVVDDESWIMGFLDVFDPAIDSIKRLLNLDQNSYYKVKESTSDTISGDNAERSTEESAGPSSGNVNDNNIDAGSGFDLDDFICVMLSLDPSKLEVQLATSLKDPPNIARTTSGVWRPSTK 672
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5APA0 | E-Value: 0.000e+0, PID: 69.12 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8531... [more] |
| A0A2G9HP52 | E-Value: 0.000e+0, PID: 71.52 | Suf domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| D7SYL4 | E-Value: 0.000e+0, PID: 70.30 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2288... [more] |
| A0A4S4D178 | E-Value: 0.000e+0, PID: 67.63 | (Uncharacterized protein {ECO:0000313|EMBL:THF9596... [more] |
| A0A2G2ZGV3 | E-Value: 0.000e+0, PID: 65.57 | (Uncharacterized protein {ECO:0000313|EMBL:PHT8114... [more] |
| A0A1U8GW31 | E-Value: 0.000e+0, PID: 65.22 | (protein high chlorophyll fluorescent 107 {ECO:000... [more] |
| M1ATQ9 | E-Value: 0.000e+0, PID: 65.41 | (Pre-mRNA splicing factor {ECO:0000313|EnsemblPlan... [more] |
| A0A2G3CEN6 | E-Value: 0.000e+0, PID: 65.27 | (Uncharacterized protein {ECO:0000313|EMBL:PHU1717... [more] |
| A0A0V0IS07 | E-Value: 0.000e+0, PID: 65.26 | (Putative psbB mRNA maturation factor Mbb1, chloro... [more] |
| A0A2G2X9G1 | E-Value: 0.000e+0, PID: 65.57 | (Uncharacterized protein {ECO:0000313|EMBL:PHT5411... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |