Resource Type:
Polypeptide
Name:
XM_017368910.1
Identifier:
XM_017368910.1-protein
Sequence:
MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSRTEKSSSSLPRLNAL
AQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLR
NANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITD
SLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNL
LSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSG
MAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL
Sequence Length:
293
Sequence Checksum:
b3b13b25a73f29956e885f1866022cd6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368910.1, derives from mRNA, XM_017368910.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JKJ1 ((Sec20 {ECO:0000313|EMBL:OMO95320.1}))
HSP 1 Score: 427.172 bits (1097), Expect = 1.171e-149
Identity = 216/295 (73.22%), Postives = 245/295 (83.05%), Query Frame = 0
Match: A0A1R3JKJ1 ((Sec20 {ECO:0000313|EMBL:OMO95320.1}))
HSP 1 Score: 427.172 bits (1097), Expect = 1.171e-149
Identity = 216/295 (73.22%), Postives = 245/295 (83.05%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSRTE--KSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE+VE KKEWEE Y K Q+HI I ++GKS E K+ +SLPRLN LAQD L LLNSLVF LDLLAPQLP+ +V+SA +LL+SWK Q Q LRL+LRNANLQAK+NMRK+A+ ERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVERS STLM FE+STGVL+KAESEYKGHRSLLMRTRNLLSTMQRQDVLDR+IL +GF+ F+ AVLYVVSKR+GILKLQRTVTAAIR+GMAG+ + R DG+ H N VP G L QPMHDEL
Sbjct: 1 MDKVVEEVEKTKKEWEEAYAKTQEHIKEIQEYGKSTVEESKNKNSLPRLNGLAQDGLALLNSLVFNLDLLAPQLPTDEEVQSAKALLESWKSQYQSLRLSLRNANLQAKDNMRKTAQRERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSTSTLMTFEDSTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRIILIVGFILFACAVLYVVSKRMGILKLQRTVTAAIRAGMAGKPEAVGRAVADGINHAQFHENVVPRVG--NPLEQPMHDEL 293
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZE50 ((Putative Sec20 family protein {ECO:0000313|EMBL:MPA42597.1}))
HSP 1 Score: 426.402 bits (1095), Expect = 3.243e-149
Identity = 218/295 (73.90%), Postives = 245/295 (83.05%), Query Frame = 0
Match: A0A5B6ZE50 ((Putative Sec20 family protein {ECO:0000313|EMBL:MPA42597.1}))
HSP 1 Score: 426.402 bits (1095), Expect = 3.243e-149
Identity = 218/295 (73.90%), Postives = 245/295 (83.05%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKS--RTEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE VE AKK+W+ETY++ Q+HI SI ++GKS + +SL RLN LAQD L LL SL FKLDLLAPQLP+ +V+SA S+L+SWK QIQ LRL++RNANLQAK NMRK+A+EER LLLGGGEESTIRRRNLQTKAGMTSAAE+ITDSLRRTRQLMVQEVERS STLM FEESTGVL+K ESEYKGHRSLLMRTRNLLSTMQRQDVLDRVI+ +GFL FS AVLYVVSKR+G+LKLQR VTAAI+SGMAGQA I G DG H NAVP +EV L QPMHDEL
Sbjct: 1 MDKVVEAVEKAKKDWDETYSRTQEHIRSIEEYGKSGRSNTEERNSLQRLNGLAQDGLALLTSLQFKLDLLAPQLPTDDEVQSAQSMLESWKHQIQSLRLSMRNANLQAKANMRKAAQEERALLLGGGEESTIRRRNLQTKAGMTSAAESITDSLRRTRQLMVQEVERSASTLMTFEESTGVLRKTESEYKGHRSLLMRTRNLLSTMQRQDVLDRVIIFIGFLLFSCAVLYVVSKRMGVLKLQRKVTAAIKSGMAGQAVIGHEAGLDGRNLAQFHENAVPQ--VEVPLEQPMHDEL 293
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AEG7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527827.1}))
HSP 1 Score: 424.476 bits (1090), Expect = 1.676e-148
Identity = 219/295 (74.24%), Postives = 243/295 (82.37%), Query Frame = 0
Match: A0A5J5AEG7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527827.1}))
HSP 1 Score: 424.476 bits (1090), Expect = 1.676e-148
Identity = 219/295 (74.24%), Postives = 243/295 (82.37%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKS--RTEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE VE AKK+W+ETY + +HI SI ++GKS + +SL RLN LAQD L LL SL FKLDLLAPQLPS +V+SA S+L+SWK QIQ LRL +RNANLQAK NMRK+A+EERELLLGGGEESTIRRRNLQTKAGMTSAAE+ITDSLRRTRQLMVQEVERS STLM FEESTGVL+K ESEYKGHRSLLMRTRNLLSTMQRQDVLDRVIL +GFL FS AVLYVVSKRIG+LKLQR VTAAI+SGMAGQA I G DG+ H NAVP +E L QP+HDEL
Sbjct: 1 MDKVVEAVEKAKKDWDETYGRNLEHIRSIEEYGKSGRSNTEERNSLQRLNGLAQDGLALLTSLQFKLDLLAPQLPSDDEVQSAQSMLESWKHQIQSLRLTMRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITDSLRRTRQLMVQEVERSASTLMTFEESTGVLRKTESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILVIGFLLFSCAVLYVVSKRIGLLKLQRKVTAAIKSGMAGQAAIGHEVGIDGINFAQFHENAVPQ--VEDPLEQPLHDEL 293
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9W7Q9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY54796.1}))
HSP 1 Score: 421.779 bits (1083), Expect = 1.799e-147
Identity = 215/298 (72.15%), Postives = 246/298 (82.55%), Query Frame = 0
Match: A0A2C9W7Q9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY54796.1}))
HSP 1 Score: 421.779 bits (1083), Expect = 1.799e-147
Identity = 215/298 (72.15%), Postives = 246/298 (82.55%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSR-----TEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE VE KKEW+E Y K Q+HI +I ++GKSR + +SLPRLN LAQD L LL SL FKLDLLAPQLP+ +V+SA + L+SWK+Q Q+LRL+LRNANLQAK NMRK+A+EERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVERS STLM FEESTGVL+KAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILA+GF F+ AVLYVVSKRIG+LKLQRTVTAAI++GMAGQ + R +G+ + N V +EV LGQPMHDEL
Sbjct: 1 MDKVVEAVETVKKEWDEAYAKMQEHIRAIEEYGKSRRGEVAATQEKNSLPRLNGLAQDGLALLQSLQFKLDLLAPQLPTDDEVKSAQASLESWKNQCQKLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSASTLMTFEESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILAVGFFLFTFAVLYVVSKRIGLLKLQRTVTAAIKAGMAGQGEMRPRGVENGVDIGQAYGNVVRK--VEVPLGQPMHDEL 296
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AUV2 ((uncharacterized protein LOC110421640 {ECO:0000313|RefSeq:XP_021290952.1}))
HSP 1 Score: 421.394 bits (1082), Expect = 2.889e-147
Identity = 212/295 (71.86%), Postives = 247/295 (83.73%), Query Frame = 0
Match: A0A6J1AUV2 ((uncharacterized protein LOC110421640 {ECO:0000313|RefSeq:XP_021290952.1}))
HSP 1 Score: 421.394 bits (1082), Expect = 2.889e-147
Identity = 212/295 (71.86%), Postives = 247/295 (83.73%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSRTE--KSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE+VE K+EW+E Y K Q+H+ I ++GK+ E K+ +SLPRLN LAQD L LLNSL F LDLLAPQLP+ +V+SA +LL+SWK Q Q LRL+LRNANLQAK+N+RK+A++ERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVERS STLM FEESTGVL+KAESEYKGHRSLLMRTRNLLSTMQRQDV+DRVIL +GF+ FS AVLYVVSKRIGILKLQRTVTAAIR+GMAG+ ++ +R +G+ N VP GI L QPMHDEL
Sbjct: 1 MDKVVEEVEKTKREWDEAYAKNQEHVKEIQEYGKATVEETKNKNSLPRLNGLAQDGLALLNSLQFNLDLLAPQLPTDEEVQSAKALLESWKSQCQSLRLSLRNANLQAKDNIRKTAQKERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSTSTLMTFEESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVILIVGFVLFSCAVLYVVSKRIGILKLQRTVTAAIRAGMAGKPDVARRAVEEGINHAQFPDNVVPKVGI--PLEQPMHDEL 293
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067EM38 ((Uncharacterized protein {ECO:0000313|EMBL:KDO52262.1}))
HSP 1 Score: 420.239 bits (1079), Expect = 7.677e-147
Identity = 218/297 (73.40%), Postives = 246/297 (82.83%), Query Frame = 0
Match: A0A067EM38 ((Uncharacterized protein {ECO:0000313|EMBL:KDO52262.1}))
HSP 1 Score: 420.239 bits (1079), Expect = 7.677e-147
Identity = 218/297 (73.40%), Postives = 246/297 (82.83%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSR--TEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGG--DGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MDEVVE VE AKKEW+E Y K Q HI +I ++GKSR EKSS+SL RLN LAQD L LLNSL KLDLLAPQLP+ QV+SA SLL+SWK + LRL+LRNANLQAK NMRK+A+EERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVER+ STLM F+ESTGVL+KAESEYKGHRSLLMRTRNLLSTMQRQD++DRVIL LG + FS AVLYVVSKRIG+LKLQR VTAAI++GMA Q I RPG DG+ V+R+ P +EV L +PMHDEL
Sbjct: 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEI--RPGAAEDGVNLAQVYRDNAA-PNMEVPLQRPMHDEL 294
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4S4B6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR33625.1}))
HSP 1 Score: 419.853 bits (1078), Expect = 9.452e-147
Identity = 220/298 (73.83%), Postives = 248/298 (83.22%), Query Frame = 0
Match: V4S4B6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR33625.1}))
HSP 1 Score: 419.853 bits (1078), Expect = 9.452e-147
Identity = 220/298 (73.83%), Postives = 248/298 (83.22%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSR--TEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGG--DGLQPPHVHR-NAVPDPGIEVALGQPMHDEL 293
MDEVVE VE AKKEW+E Y K Q+HI +I ++GKSR EKSS+SL RLN LAQD L LLNSL KLDLLAPQLP+ QV+SA SLL SWK + LRL+LRNANLQAK NMRK+A+EERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVER+ STLM F+ESTGVL+KAESEYKGHRSLLMRTRNLLSTMQRQD++DRVIL LG + FS AVLYVVSKRIG+LKLQR VTAAI++GMA Q I RPG DG+ V+R NA P+ +EV L +PMHDEL
Sbjct: 1 MDEVVEAVEKAKKEWDEAYAKTQEHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLPSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEI--RPGAAEDGVNLAQVYRDNAAPN--MEVPLQRPMHDEL 294
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RDH6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8076128.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 2.339e-146
Identity = 213/293 (72.70%), Postives = 243/293 (82.94%), Query Frame = 0
Match: A0A5N6RDH6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8076128.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 2.339e-146
Identity = 213/293 (72.70%), Postives = 243/293 (82.94%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSRTEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE VE KKEW+E Y++ Q+HI +I ++GKSR E++S LPRLN LAQD L LL+SL F LDLLAPQLPS +V+SA +LL SWK+Q LRLNLRNANLQAK NMRK+A+EERELLLGGGEESTIRRRNLQTKAGMTSAAE+ITDSLRRTRQLMVQEVERS STLM EESTGVLKK+ESEYKGHRSLLMRTRNLLSTM+RQDVLDR+ILA+G FS AVLYVVSKRIGILKLQR VTAAI++G+ GQA I RP DG+ VH +AV ++V +PM DEL
Sbjct: 1 MDKVVEAVEKVKKEWDEAYSRTQEHIKAIEEYGKSREERNS--LPRLNGLAQDGLALLSSLQFNLDLLAPQLPSDHEVQSATALLHSWKNQSHNLRLNLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITDSLRRTRQLMVQEVERSASTLMVVEESTGVLKKSESEYKGHRSLLMRTRNLLSTMKRQDVLDRLILAVGVFLFSCAVLYVVSKRIGILKLQRKVTAAIKAGLVGQAEIGHRPVADGVNLAQVHEDAVHK--VDVPFERPMRDEL 289
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5P2V5 ((Uncharacterized protein {ECO:0000313|EMBL:GAY46601.1}))
HSP 1 Score: 417.927 bits (1073), Expect = 6.858e-146
Identity = 219/298 (73.49%), Postives = 247/298 (82.89%), Query Frame = 0
Match: A0A2H5P2V5 ((Uncharacterized protein {ECO:0000313|EMBL:GAY46601.1}))
HSP 1 Score: 417.927 bits (1073), Expect = 6.858e-146
Identity = 219/298 (73.49%), Postives = 247/298 (82.89%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSR--TEKSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGG--DGLQPPHVH-RNAVPDPGIEVALGQPMHDEL 293
MDEVVE VE AKKEW+E Y K Q+HI +I ++GKSR EKSS+SL RLN LAQD L LLNSL KLDLLAPQLP+ QV+SA SLL SWK + LRL+LRNANLQAK NMRK+A+EERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVER+ STLM F+ESTGVL+KAESEYKGHRSLLMRTRNLLSTMQRQD++DRVIL LG + FS AVLYVVSKRIG+LKLQR VTAAI++GMA Q I RPG DG+ V+ NA P+ +EV L +PMHDEL
Sbjct: 1 MDEVVEAVEKAKKEWDEAYAKTQEHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLPSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEI--RPGAAEDGVNLAQVYCDNAAPN--MEVPLQRPMHDEL 294
BLAST of XM_017368910.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061EPE9 ((Sec20 family protein {ECO:0000313|EMBL:EOY06222.1}))
HSP 1 Score: 417.927 bits (1073), Expect = 7.225e-146
Identity = 212/295 (71.86%), Postives = 245/295 (83.05%), Query Frame = 0
Match: A0A061EPE9 ((Sec20 family protein {ECO:0000313|EMBL:EOY06222.1}))
HSP 1 Score: 417.927 bits (1073), Expect = 7.225e-146
Identity = 212/295 (71.86%), Postives = 245/295 (83.05%), Query Frame = 0
Query: 1 MDEVVEQVENAKKEWEETYNKAQQHINSIHDFGKSRTE--KSSSSLPRLNALAQDELGLLNSLVFKLDLLAPQLPSHLQVESALSLLKSWKDQIQRLRLNLRNANLQAKENMRKSAKEERELLLGGGEESTIRRRNLQTKAGMTSAAETITDSLRRTRQLMVQEVERSGSTLMAFEESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVLDRVILALGFLFFSLAVLYVVSKRIGILKLQRTVTAAIRSGMAGQANILQRPGGDGLQPPHVHRNAVPDPGIEVALGQPMHDEL 293
MD+VVE+VE K+EW+E Y K Q+H+ I ++GKS E K+ +SLPRLN LAQD L LLNSL F LDL APQLP+ +V+SA +LL+SWK Q Q L L+LRNANLQAK+NMRK+A++ERELLLGGGEESTIRRRNLQTKAGMTSAAE+IT+SLRRTRQLMVQEVERS STLM FEESTGVL+KAESEYKGHRSLLMRTRNLLSTMQRQDV+DRVIL +GF+ FS AVLYVVSKRIGILKLQRTVTAAIR+GMAG+ ++ +R +G+ N VP GI L QPMHDEL
Sbjct: 1 MDKVVEEVEKTKREWDEAYAKTQEHVKEIQEYGKSTVEETKNKNSLPRLNGLAQDGLALLNSLQFNLDLHAPQLPTDEEVQSAKALLESWKSQCQSLILSLRNANLQAKDNMRKTAQKERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSTSTLMTFEESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVILIVGFVLFSCAVLYVVSKRIGILKLQRTVTAAIRAGMAGKPDVARRAVEEGINHAQFPGNVVPKVGI--PLEQPMHDEL 293
| Match Name | Stats | Description |
|---|---|---|
| A0A1R3JKJ1 | E-Value: 1.171e-149, PID: 73.22 | (Sec20 {ECO:0000313|EMBL:OMO95320.1})[more] |
| A0A5B6ZE50 | E-Value: 3.243e-149, PID: 73.90 | (Putative Sec20 family protein {ECO:0000313|EMBL:M... [more] |
| A0A5J5AEG7 | E-Value: 1.676e-148, PID: 74.24 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8527... [more] |
| A0A2C9W7Q9 | E-Value: 1.799e-147, PID: 72.15 | (Uncharacterized protein {ECO:0000313|EMBL:OAY5479... [more] |
| A0A6J1AUV2 | E-Value: 2.889e-147, PID: 71.86 | (uncharacterized protein LOC110421640 {ECO:0000313... [more] |
| A0A067EM38 | E-Value: 7.677e-147, PID: 73.40 | (Uncharacterized protein {ECO:0000313|EMBL:KDO5226... [more] |
| V4S4B6 | E-Value: 9.452e-147, PID: 73.83 | (Uncharacterized protein {ECO:0000313|EMBL:ESR3362... [more] |
| A0A5N6RDH6 | E-Value: 2.339e-146, PID: 72.70 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8076... [more] |
| A0A2H5P2V5 | E-Value: 6.858e-146, PID: 73.49 | (Uncharacterized protein {ECO:0000313|EMBL:GAY4660... [more] |
| A0A061EPE9 | E-Value: 7.225e-146, PID: 71.86 | (Sec20 family protein {ECO:0000313|EMBL:EOY06222.1... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |