Resource Type:
Polypeptide
Name:
XM_017371617.1
Identifier:
XM_017371617.1-protein
Sequence:
MYSAIHSLSEMDGDGEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSEL
HDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSC
KELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEV
QKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAR
EELSELAIKVANDCQQVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSC
LTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQMEWMMS
DIS
Sequence Length:
303
Sequence Checksum:
536e9ae8fad610876408f7e6f6eb0897
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371617.1, derives from mRNA, XM_017371617.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6X2L2 ((protein PHR1-LIKE 3-like isoform X1 {ECO:0000313|RefSeq:XP_027120092.1}))
HSP 1 Score: 425.246 bits (1092), Expect = 4.061e-148
Identity = 209/283 (73.85%), Postives = 241/283 (85.16%), Query Frame = 0
Match: A0A6P6X2L2 ((protein PHR1-LIKE 3-like isoform X1 {ECO:0000313|RefSeq:XP_027120092.1}))
HSP 1 Score: 425.246 bits (1092), Expect = 4.061e-148
Identity = 209/283 (73.85%), Postives = 241/283 (85.16%), Query Frame = 0
Query: 20 SLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQMEWMMSDI 302
SLDG+N+ GD LVLTTDPKPRLRWT+ELH+RF+DAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQ+CKE ENSKDASC+AES DT ST ASSR+ AQ++NDGY VTEALRVQMEVQ+RLHEQLEVQ RLQLRIEAQGKYLQSILEKACKALND +AS GLEAAREELSELAIKVA+DCQ + +V LS+VAA +E K +N+ ARIGDCS+DSCLT+NESPVSP+G QA ALKK R RP+ + + +S+ Q+EWMM++I
Sbjct: 49 SLDGTNLP--GDACLVLTTDPKPRLRWTAELHERFIDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDASCVAESQDTGSSTCASSRMIAQDINDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDHAVASAGLEAAREELSELAIKVASDCQGMTSVPPLSEVAAGMENKTPSNLPARIGDCSIDSCLTSNESPVSPVGDGSQAAALKK--RARPVFGNGESLHFDNSMRQVEWMMTNI 327
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSA3 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 423.32 bits (1087), Expect = 9.426e-148
Identity = 228/310 (73.55%), Postives = 260/310 (83.87%), Query Frame = 0
Match: A0A5B7BSA3 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 423.32 bits (1087), Expect = 9.426e-148
Identity = 228/310 (73.55%), Postives = 260/310 (83.87%), Query Frame = 0
Query: 1 MYSAIHSLSEMDGD---GEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQVMTVS-----SLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQMEWMMSDI 302
MYSAIHSL +DG GEF GSLDG+N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKT++RTMGVKGLTLYHLKSHLQKYRLGKQSCKEL +NSKDASCIAES DT STS+SSR+ +Q+L DGY VTEALRVQMEVQ+RLHEQLEVQ RLQLRIEAQGKYLQSILEKACKAL+DQ AS GLEAAREELSELAIKV+NDC V+ V SLS+VAA LE + +N+ ARIGD S DSCLT+N +PVSP+GV QA ALKK RPRP+ S++D PL+S++ QMEW M++I
Sbjct: 1 MYSAIHSLP-LDGSVGHGEFQGSLDGTNIP--GDTCLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTVMRTMGVKGLTLYHLKSHLQKYRLGKQSCKELPDNSKDASCIAESQDTGSSTSSSSRMISQDLKDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALSDQAAASAGLEAAREELSELAIKVSNDCNGVVNVDTLKMPSLSEVAAALEDRTASNLPARIGDFSFDSCLTSNGNPVSPMGVSSQAAALKK--RPRPLFSNSDSMPLESNMRQMEWAMTNI 305
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RWI5 ((Transcription factor, putative {ECO:0000313|EMBL:EEF44237.1}))
HSP 1 Score: 422.935 bits (1086), Expect = 1.328e-147
Identity = 221/308 (71.75%), Postives = 254/308 (82.47%), Query Frame = 0
Match: B9RWI5 ((Transcription factor, putative {ECO:0000313|EMBL:EEF44237.1}))
HSP 1 Score: 422.935 bits (1086), Expect = 1.328e-147
Identity = 221/308 (71.75%), Postives = 254/308 (82.47%), Query Frame = 0
Query: 1 MYSAIHSLSEMDGDGEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQV-----MTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQ-MEWMMSDI 302
MYSAIHSL +DG G+F GSLDG+N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLG+QSCKE ENSKDAS +AES DT STS SSR+ AQ++NDGY VTEALRVQMEVQ+RLHEQLEVQ RLQLRIEAQGKYLQSILEKACKALNDQ S GLEAAREELSELAIKV+N+CQ + M + SLS++A LE K+ +N+ ARIGDCSV+SCLT+ SPVSP+GV ++KK RPRPI + D PL+ S+ Q +EWMM +I
Sbjct: 1 MYSAIHSLP-LDGHGDFQGSLDGTNLP--GDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGRQSCKESNENSKDAS-VAESQDTGSSTSTSSRMIAQDVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAAVSAGLEAAREELSELAIKVSNECQGIVPADNMKMPSLSELAVALESKSTSNLPARIGDCSVESCLTSTGSPVSPMGVGSHTASIKK--RPRPIFGNGDSLPLEGSMRQEVEWMMGNI 302
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7ITZ4 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 422.935 bits (1086), Expect = 1.530e-147
Identity = 218/311 (70.10%), Postives = 256/311 (82.32%), Query Frame = 0
Match: A0A5C7ITZ4 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 422.935 bits (1086), Expect = 1.530e-147
Identity = 218/311 (70.10%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MYSAIHSL---SEMDGDGEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQ-----QVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQ-MEWMMSDI 302
MYSAIHSL + G +F LDG+N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQSCKE ENSKDASC+AES DT ST+ S+R+A+Q+L+DGY VTEALRVQMEVQ+RLHEQLEVQ RLQLRIEAQGKYLQ+ILEKACKALNDQ +AS GLEAAREELSELAIKV++DCQ + + + SLS++AA LE KN +++ ARIGDCSV+SCLT+ SPVSP+GV QA A+KK RPRP+ + D PL+ S+ Q +EW+M I
Sbjct: 1 MYSAIHSLPLDGSVGGHSDFQSPLDGTNLP--GDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTENSKDASCVAESQDTGSSTTTSTRMASQDLSDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQTILEKACKALNDQAVASAGLEAAREELSELAIKVSSDCQGMNPLETIKMPSLSELAAALENKNTSSIPARIGDCSVESCLTSTGSPVSPMGVGSQAAAMKK--RPRPLFGNGDTLPLEGSMRQEVEWIMPSI 307
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TU04 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 422.165 bits (1084), Expect = 5.276e-147
Identity = 209/283 (73.85%), Postives = 240/283 (84.81%), Query Frame = 0
Match: A0A068TU04 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 422.165 bits (1084), Expect = 5.276e-147
Identity = 209/283 (73.85%), Postives = 240/283 (84.81%), Query Frame = 0
Query: 20 SLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQMEWMMSDI 302
SLDG+N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQ+CKE ENSKDASC+AES DT ST ASSR+ AQ++NDGY VTEALRVQMEVQ+RLHEQLEVQ RLQLRIEAQGKYLQSILEKACKALND +AS GLEAAREELSELAIKVA+DCQ + +V LS+VA +E K +N+ ARIGDCS+DSCLT+NESPVSP+G QA ALKK R RP+ + + +S+ Q+EWMM++I
Sbjct: 46 SLDGTNL--PGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDASCVAESQDTGSSTCASSRMIAQDINDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDHAVASAGLEAAREELSELAIKVASDCQGMTSVPPLSEVAPGMENKTPSNLPARIGDCSIDSCLTSNESPVSPVGDGSQAAALKK--RARPVFGNRESLHFDNSMRQVEWMMTNI 324
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4HW06 ((protein PHR1-LIKE 2-like {ECO:0000313|RefSeq:XP_018860318.1}))
HSP 1 Score: 421.394 bits (1082), Expect = 5.786e-147
Identity = 215/308 (69.81%), Postives = 248/308 (80.52%), Query Frame = 0
Match: A0A2I4HW06 ((protein PHR1-LIKE 2-like {ECO:0000313|RefSeq:XP_018860318.1}))
HSP 1 Score: 421.394 bits (1082), Expect = 5.786e-147
Identity = 215/308 (69.81%), Postives = 248/308 (80.52%), Query Frame = 0
Query: 1 MYSAIHSLSEMDGDGEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVAND-----CQQVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQ-MEWMMSDI 302
MYSAIHSL G EF G+LDG+N+ GD LVLT+DPKPRLRWT ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQSCKE E+SKDASC+AES DT S S SSR+ AQ++NDGY VTEALRVQMEVQ+RLHEQLEVQ LQLRIEAQGKYLQSILEKAC ALNDQ S GLEA REELS LAIKV+ND + M + SLS++A+ +E N +N+ ARIGDCSV+SCLT+ SPVSP+GV LQA ALKK RPRP+ + D PL+ ++ Q +EWMM++I
Sbjct: 1 MYSAIHSLPLDVGHAEFQGTLDGTNL--PGDACLVLTSDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESIESSKDASCMAESLDTGSSLSPSSRMLAQDMNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACNALNDQAAESAGLEATREELSALAIKVSNDRLVLAPLETMKIPSLSEIASAIENNNTSNLPARIGDCSVESCLTSTGSPVSPMGVSLQATALKK--RPRPLFGNVDSLPLEGNMRQDIEWMMTNI 304
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WQ22 ((protein PHR1-LIKE 3-like {ECO:0000313|RefSeq:XP_027116786.1}))
HSP 1 Score: 422.165 bits (1084), Expect = 5.864e-147
Identity = 209/283 (73.85%), Postives = 240/283 (84.81%), Query Frame = 0
Match: A0A6P6WQ22 ((protein PHR1-LIKE 3-like {ECO:0000313|RefSeq:XP_027116786.1}))
HSP 1 Score: 422.165 bits (1084), Expect = 5.864e-147
Identity = 209/283 (73.85%), Postives = 240/283 (84.81%), Query Frame = 0
Query: 20 SLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQMEWMMSDI 302
SLDG+N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQ+CKE ENSKDASC+AES DT ST ASSR+ AQ++NDGY VTEALRVQMEVQ+RLHEQLEVQ RLQLRIEAQGKYLQSILEKACKALND +AS GLEAAREELSELAIKVA+DCQ + +V LS+VA +E K +N+ ARIGDCS+DSCLT+NESPVSP+G QA ALKK R RP+ + + +S+ Q+EWMM++I
Sbjct: 49 SLDGTNL--PGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDASCVAESQDTGSSTCASSRMIAQDINDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDHAVASAGLEAAREELSELAIKVASDCQGMTSVPPLSEVAPGMENKTPSNLPARIGDCSIDSCLTSNESPVSPVGDGSQAAALKK--RARPVFGNRESLHFDNSMRQVEWMMTNI 327
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A9PEQ8 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 421.009 bits (1081), Expect = 1.022e-146
Identity = 217/311 (69.77%), Postives = 250/311 (80.39%), Query Frame = 0
Match: A9PEQ8 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})
HSP 1 Score: 421.009 bits (1081), Expect = 1.022e-146
Identity = 217/311 (69.77%), Postives = 250/311 (80.39%), Query Frame = 0
Query: 1 MYSAIHSLSEMDGDGEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKD---ASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQV-----MTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQ-MEWMMSDI 302
MYSAIHSL +DG G+F SLDG N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQSCKE +NSKD A +AES DT STSASSR+ AQ+LNDGY VTEALRVQMEVQ+RLHEQLEVQH LQLRIEAQGKYLQSILEKACKALNDQ +A+ GLEAAREELSELAIKV+N+C + M + SLS++AA L +N +N+ ARIGDCSV+SCLT+ SPVSP+GV Q + KK R RP+ + D P + + Q +EW MS+I
Sbjct: 1 MYSAIHSLP-LDGHGDFQASLDGINLP--GDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNRNASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKK--RSRPVLGNGDSLPFEGNFRQEVEWTMSNI 306
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QPS4 ((Myb family transcription factor family protein {ECO:0000313|EMBL:TKS12903.1}))
HSP 1 Score: 420.239 bits (1079), Expect = 1.927e-146
Identity = 217/311 (69.77%), Postives = 250/311 (80.39%), Query Frame = 0
Match: A0A4U5QPS4 ((Myb family transcription factor family protein {ECO:0000313|EMBL:TKS12903.1}))
HSP 1 Score: 420.239 bits (1079), Expect = 1.927e-146
Identity = 217/311 (69.77%), Postives = 250/311 (80.39%), Query Frame = 0
Query: 1 MYSAIHSLSEMDGDGEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKD---ASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQQV-----MTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSLPQ-MEWMMSDI 302
MYSAIHSL +DG G+F SLDG N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQSCKE +NSKD A +AES DT STSASSR+ AQ+LNDGY VTEALRVQMEVQ+RLHEQLEVQH LQLRIEAQGKYLQSILEKACKALNDQ +A+ GLEAAREELSELAIKV+N+C + M + SLS++AA L +N +N+ ARIGDCSV+SCLT+ SPVSP+GV Q + KK R RP+ D P + ++ Q +EW MS+I
Sbjct: 1 MYSAIHSLP-LDGHGDFQASLDGINL--SGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMHSLSELAAALGNRNASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKK--RSRPVLGHGDSLPFEGNIRQEVEWTMSNI 306
BLAST of XM_017371617.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3BI31 ((Myb_DNA-binding domain-containing protein/Myb_CC_LHEQLE domain-containing protein {ECO:0000313|EMBL:GAV67677.1}))
HSP 1 Score: 418.313 bits (1074), Expect = 9.565e-146
Identity = 215/308 (69.81%), Postives = 253/308 (82.14%), Query Frame = 0
Match: A0A1Q3BI31 ((Myb_DNA-binding domain-containing protein/Myb_CC_LHEQLE domain-containing protein {ECO:0000313|EMBL:GAV67677.1}))
HSP 1 Score: 418.313 bits (1074), Expect = 9.565e-146
Identity = 215/308 (69.81%), Postives = 253/308 (82.14%), Query Frame = 0
Query: 1 MYSAIHSLSEMDGD----GEFHGSLDGSNVVVGGDPRLVLTTDPKPRLRWTSELHDRFVDAVSQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSCKELAENSKDASCIAESHDTDLSTSASSRIAAQNLNDGYHVTEALRVQMEVQKRLHEQLEVQHRLQLRIEAQGKYLQSILEKACKALNDQTLASVGLEAAREELSELAIKVANDCQ-QVMTVSSLSDVAATLERKNLTNMHARIGDCSVDSCLTTNESPVSPIGVRLQAGALKKRPRPRPISSDADLSPLQSSL-PQMEWMMSDI 302
MY AIH +DG G++ SLDG+N+ GD LVLTTDPKPRLRWT+ELH+RFVDAV+QLGGPDKATPKTI+RTMGVKGLTLYHLKSHLQKYRLGKQSCKE +NSKDASCIAES DT ST++ SR+AAQ+LNDG+ VTEALRVQMEVQ+RLHEQLEVQ LQLRIEAQGKYLQSILEKACKALNDQ AS GLEA+REELSELAIKV NDCQ +VM SLS++AA L+++N +N+ ARIGDCSV+SCL++ SPVSPIG+ QA A+K RP P+ S + PL+ ++ ++EWMM +I
Sbjct: 1 MYPAIHHSLPLDGTAVGHGDYQASLDGTNLP--GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDASCIAESQDTGSSTTSQSRMAAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACKALNDQAAASAGLEASREELSELAIKVLNDCQGRVM--PSLSELAAVLDKQNCSNLPARIGDCSVESCLSSIGSPVSPIGMGSQAAAMKN--RPMPLFSKGEPLPLEGNMGEEVEWMMPNI 302
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6X2L2 | E-Value: 4.061e-148, PID: 73.85 | (protein PHR1-LIKE 3-like isoform X1 {ECO:0000313|... [more] |
| A0A5B7BSA3 | E-Value: 9.426e-148, PID: 73.55 | HTH myb-type domain-containing protein {ECO:000025... [more] |
| B9RWI5 | E-Value: 1.328e-147, PID: 71.75 | (Transcription factor, putative {ECO:0000313|EMBL:... [more] |
| A0A5C7ITZ4 | E-Value: 1.530e-147, PID: 70.10 | HTH myb-type domain-containing protein {ECO:000025... [more] |
| A0A068TU04 | E-Value: 5.276e-147, PID: 73.85 | HTH myb-type domain-containing protein {ECO:000025... [more] |
| A0A2I4HW06 | E-Value: 5.786e-147, PID: 69.81 | (protein PHR1-LIKE 2-like {ECO:0000313|RefSeq:XP_0... [more] |
| A0A6P6WQ22 | E-Value: 5.864e-147, PID: 73.85 | (protein PHR1-LIKE 3-like {ECO:0000313|RefSeq:XP_0... [more] |
| A9PEQ8 | E-Value: 1.022e-146, PID: 69.77 | HTH myb-type domain-containing protein {ECO:000025... [more] |
| A0A4U5QPS4 | E-Value: 1.927e-146, PID: 69.77 | (Myb family transcription factor family protein {E... [more] |
| A0A1Q3BI31 | E-Value: 9.565e-146, PID: 69.81 | (Myb_DNA-binding domain-containing protein/Myb_CC_... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |