Resource Type:
Polypeptide
Name:
XM_017371018.1
Identifier:
XM_017371018.1-protein
Sequence:
MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSV
HHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEE
FDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSMVVGNNENGEGFDGNSHG
MDVVPFGDLGQGEDGDFGGGMDGNGVLGLEFEYDGEEGEENFNGGNSGLL
KEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESET
RFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRR
QRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETL
NQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYL
SQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID
Sequence Length:
432
Sequence Checksum:
10ad790536ebee8c354b1b339825b151
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371018.1, derives from mRNA, XM_017371018.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RXQ8 ((SH3 and multiple ankyrin repeat domains protein like {ECO:0000313|EMBL:PSS34824.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 328/437 (75.06%), Postives = 371/437 (84.90%), Query Frame = 0
Match: A0A2R6RXQ8 ((SH3 and multiple ankyrin repeat domains protein like {ECO:0000313|EMBL:PSS34824.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 328/437 (75.06%), Postives = 371/437 (84.90%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSMVVG--NNENGEGFDG-NSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGGNSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MPP RRKKW+EAEERTLIDKYGEMVCDG+LAKMKTREKK+RPI+LYVNSVHHIRDPI+YPWQWTWKDV TKVQNMRHQY+LVKQKIKK E GDSG EEF+WVEGLTHWSNFLRYK++FGDV VF GNDS+ V NNENGEGFD HGM+VV FGDLG +GDF G DG NGV+GL+FEYD EEG++N NG N KEDGD+GFVY+D+EP GSDTRKK K LKG+ KKAWGFLA+QLGQL+E ETRFE REVERERERQRREHLR E ++ RE+KWE+R ER+ER EK+RRQR EWE++EKESEER RRRRE++L+YE E EER+NRRR EWK +IDE L+QHR EM QIQTRILHEQQNLT LLG+VSQWTG G+ DH+GA+NHYLSQMMQN+HHVN IVHGDTRVEGD+QDDQFI+D
Sbjct: 2 MPPPRRKKWTEAEERTLIDKYGEMVCDGTLAKMKTREKKYRPIALYVNSVHHIRDPITYPWQWTWKDVSTKVQNMRHQYTLVKQKIKKNE-FAGDSGVEEFNWVEGLTHWSNFLRYKDVFGDVALVFNGNDSVAVAGDNNENGEGFDDVGGHGMEVVQFGDLGHAGEGDFDVGFDGGENGVMGLDFEYDAEEGDDNHNGNNHS--KEDGDDGFVYEDVEPSGSDTRKKGKALKGMGKKAWGFLASQLGQLQELETRFEHREVERERERQRREHLRIEIDREREKKWEERAKEREEREKAREKVRRQRIREWETIEKESEERGRRRREDELLYEREWEERMNRRRSEWKTRIDEMLSQHRVEMGQIQTRILHEQQNLTSQLLGIVSQWTGHPTGLADHSGATNHYLSQMMQNLHHVNGIVHGDTRVEGDNQDDQFIVD 435
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WQ98 ((uncharacterized protein LOC113734493 isoform X1 {ECO:0000313|RefSeq:XP_027116871.1}))
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 302/437 (69.11%), Postives = 359/437 (82.15%), Query Frame = 0
Match: A0A6P6WQ98 ((uncharacterized protein LOC113734493 isoform X1 {ECO:0000313|RefSeq:XP_027116871.1}))
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 302/437 (69.11%), Postives = 359/437 (82.15%), Query Frame = 0
Query: 2 PPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSM-VVGN-NENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGGN--SGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
P SRRKKW+EAEERTLIDKYGEMVCDG+LAKMKTREKKF+PI+LYVNSVHH RDP++YPWQWTWKDV KVQNMRHQY+LVKQKIKK ESVG G+EFDW+EGLT+WSNFL YKE+FGDV V DS+ +VG+ N+N GFDG HGMD+ F LG D DF G+DG NG++ L F Y+ EEGEENFNGGN + +KEDGD+GFVY+ EP GSDTRKKRKV KGL+KKAW FLANQLGQLRE ET+FEQRE +RERER RRE L E EQ R+ KW++RE ER+ER EKLR+QR EW++MEKE E+R RRRR+E LM+E + EER+NR RLEW+K++D+ L+QHRA+MSQIQTR++HEQQ+LT LLG+VSQWTG G+ DHTGAS+HYL+QMMQN+HHVN +VHGD RV+GD+QDDQFI+D
Sbjct: 5 PTSRRKKWTEAEERTLIDKYGEMVCDGTLAKMKTREKKFKPIALYVNSVHHARDPVTYPWQWTWKDVSVKVQNMRHQYALVKQKIKKMESVGDSGCGDEFDWMEGLTYWSNFLSYKEVFGDVSVVHNSCDSLAIVGDCNDNDGGFDGGVHGMDMTQFDHLGHVGDDDFAPGLDGVDNGIISLGFHYEREEGEENFNGGNKSNSHVKEDGDDGFVYEGTEPTGSDTRKKRKVSKGLEKKAWRFLANQLGQLREMETQFEQREADRERERLRRERLLMEIEQERDMKWQEREKEREEREISREKLRKQRILEWDTMEKEIEDRERRRRDEDLMFERQWEERMNRSRLEWEKRMDDMLSQHRAQMSQIQTRLVHEQQSLTSQLLGIVSQWTGHPTGLSDHTGASSHYLNQMMQNLHHVNGLVHGDARVDGDNQDDQFIVD 441
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834L5M2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7116193.1}))
HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 319/437 (73.00%), Postives = 367/437 (83.98%), Query Frame = 0
Match: A0A834L5M2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7116193.1}))
HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 319/437 (73.00%), Postives = 367/437 (83.98%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSMVVG---NNENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGGNSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MPP RRKKW+EAEERTLIDKYGEMVCDGSLAKMKTREKK++PI+LYVNSVHH+RDPI++PWQWTWKDV TKVQNMRHQYSLVKQKIKKTE VG DSG EEFDWVEGLTHWSNFLRYKE+FGDV VF +DS+VV NNE +GFDG+ HGM++ FG LG +GDF G DG NGV+GL+FEYDG+EGE+N N N KED D+GFVY+D+EP GSDTRKKRK LKG+ K+AWGFLANQLGQLRE ETRFE REVERERERQRRE+ RAE E RE+KWE+RE ER++R ++LR+QR EWE+ME ESEER +RRREE+L+YE E EER++RRRLEWKK+IDE L QHR EM QIQTRILHEQQNLT +LG+VSQWTG G+ DHT A NHY+SQM+QN+H +N IVHGDTRVE D+QDDQFI+D
Sbjct: 2 MPPPRRKKWTEAEERTLIDKYGEMVCDGSLAKMKTREKKYKPIALYVNSVHHVRDPITFPWQWTWKDVSTKVQNMRHQYSLVKQKIKKTEFVG-DSGVEEFDWVEGLTHWSNFLRYKEVFGDVALVFGSSDSVVVAGLDNNEIADGFDGSGHGMEIPEFGHLGHDGEGDFAVGFDGGENGVMGLDFEYDGDEGEDNHNCANPS--KEDADDGFVYEDVEPSGSDTRKKRKALKGMGKRAWGFLANQLGQLRELETRFEHREVERERERQRRENHRAEIEHEREKKWEEREKEREDRERARDELRKQRIREWEAMENESEERQKRRREEELIYEREWEERMSRRRLEWKKRIDEMLGQHRVEMGQIQTRILHEQQNLTSQMLGIVSQWTGHPTGLTDHTVAGNHYMSQMLQNLHQINSIVHGDTRVEDDNQDDQFIVD 435
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WZY8 ((uncharacterized protein LOC113736352 isoform X1 {ECO:0000313|RefSeq:XP_027119081.1, ECO:0000313|RefSeq:XP_027119082.1}))
HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 300/437 (68.65%), Postives = 359/437 (82.15%), Query Frame = 0
Match: A0A6P6WZY8 ((uncharacterized protein LOC113736352 isoform X1 {ECO:0000313|RefSeq:XP_027119081.1, ECO:0000313|RefSeq:XP_027119082.1}))
HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 300/437 (68.65%), Postives = 359/437 (82.15%), Query Frame = 0
Query: 2 PPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSM-VVGN-NENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGGN--SGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
P SRRKKW+EAEERTLIDKYGEMVCDG+LAKMKTREKKF+PI+LYVNSVHH+RDP++YPWQWTWKDV KVQNMRHQY+LVKQKIKK ESVG G+EFDW+EGLT+WSNFL YKE+FGDV V DS+ +VG+ N+N GFDG HGMD+ F LG D DF G+DG NG++ L F Y+ EEGEENFNGGN + +KEDGD+GFVY+ EP GSDTRKK KV KGL+KKAW FLANQLGQLRE ET+FEQRE +RERER RRE L E EQ R+ KW++RE ER+ER EKLR+QR EWE+MEKE E+R RRRR+E LM+E + EER+NR RLEW+K++D+ L+QHRA+MSQIQTR++HEQQ+LT LLG+VSQWTG G+ DHTGAS+HYL+QM+QN+HHVN +VHGD RV+GD+Q+DQFI+D
Sbjct: 5 PTSRRKKWTEAEERTLIDKYGEMVCDGTLAKMKTREKKFKPIALYVNSVHHVRDPVTYPWQWTWKDVSVKVQNMRHQYALVKQKIKKMESVGDSGCGDEFDWMEGLTYWSNFLSYKEVFGDVSVVHNSCDSLAIVGDCNDNDGGFDGGVHGMDMTQFDHLGHVGDDDFAPGLDGVDNGIISLGFHYEREEGEENFNGGNKSNSHVKEDGDDGFVYEGTEPTGSDTRKKSKVSKGLEKKAWRFLANQLGQLREMETQFEQREADRERERLRRERLLMEIEQERDMKWQEREKEREEREISREKLRKQRILEWETMEKEIEDRERRRRDEDLMFERQWEERMNRSRLEWEKRMDDMLSQHRAQMSQIQTRLVHEQQSLTSQLLGIVSQWTGHPTGLSDHTGASSHYLNQMIQNLHHVNGLVHGDARVDGDNQEDQFIVD 441
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RS04 ((Uncharacterized protein {ECO:0000313|EMBL:PSS32801.1}))
HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 325/437 (74.37%), Postives = 368/437 (84.21%), Query Frame = 0
Match: A0A2R6RS04 ((Uncharacterized protein {ECO:0000313|EMBL:PSS32801.1}))
HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 325/437 (74.37%), Postives = 368/437 (84.21%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSMVVG--NNENGEGFDG-NSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGGNSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MPP RRKKW+EAEER+LI+KYGEM CDG+LAKMKTREKK+RPI+LYVNS HH+ DPI+YPWQWTWKDV TKVQNMRHQYSLVKQKIKK E GDSG EEFDWVEGLTHWSNFLRYK++FGDV VF GNDS+VV NNENGEGFD HGM+VV FGDLG +GDF G DG NGV+GL+FEYD EEG++N NG N KEDGD+GFVY+D+EP GSDTRKK KVLKG+ KKAWGFLA+QLGQL+E ETRFE REVERERERQRREH R E E+ RE KWE+RE ER+ER EK+RRQR EWE++EKESEER RRRRE++L+YE E EER+NRRR EWK ++DE L+QHR EM QIQTRILHEQQNLT LLG+VSQWTG G+ DH+GA+NHYLSQMMQN+HHVN IVHGDTR EGD+QDDQFI+D
Sbjct: 1 MPPPRRKKWTEAEERSLIEKYGEMGCDGTLAKMKTREKKYRPIALYVNSAHHVCDPITYPWQWTWKDVSTKVQNMRHQYSLVKQKIKKNE-FAGDSGVEEFDWVEGLTHWSNFLRYKDVFGDVALVFNGNDSVVVAGDNNENGEGFDDVGGHGMEVVQFGDLGHAGEGDFDVGFDGGENGVMGLDFEYDAEEGDDNHNGNNHS--KEDGDDGFVYEDVEPSGSDTRKKGKVLKGMGKKAWGFLASQLGQLKELETRFEHREVERERERQRREHFRIEIERERETKWEEREKEREEREKAREKVRRQRIREWEAIEKESEERGRRRREDELLYEREWEERMNRRRSEWKTRLDEMLSQHRVEMGQIQTRILHEQQNLTSQLLGIVSQWTGHPTGLADHSGATNHYLSQMMQNLHHVNGIVHGDTRGEGDNQDDQFIVD 434
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZFX6 ((Putative stress response protein NST1-like {ECO:0000313|EMBL:MPA42885.1}))
HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 336/436 (77.06%), Postives = 373/436 (85.55%), Query Frame = 0
Match: A0A5B6ZFX6 ((Putative stress response protein NST1-like {ECO:0000313|EMBL:MPA42885.1}))
HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 336/436 (77.06%), Postives = 373/436 (85.55%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSMVV--GNNENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMD--GNGVLGLEFEYDGEEGEENFNGGNSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MP RRKKW+EAEERTLIDKYGEMVCDG+LAKMKTREKK+RPI+L+VNS+HH+ DPI YPWQWTWKDV TKVQNMRHQYSLVKQKIKK E VG DSGGEEFDWVEGLTHWSNFLRYKE+FGDV VF ND+MVV GNNENG GFD N HGM++V G LG EDGDF G+D NG++GLEFEYDGEEGEEN N N+ +KEDGD+GFVY+ +EP GSDTRKKRKVLKGL+KKAWGFLANQLGQLRE E+RFEQRE ERERERQRRE+LR E EQ RE KWE+RE ER+ER EKLRRQR E E+MEKESEER RRRREE+L+YE E EER+N+RR EWKK+ DE L+QH+ EM QIQTRILHEQQNLT LLG+VSQWTG G+ DHTGASNHYLSQMMQN+HHVN IVHGDTRVEGD+QDDQFI+D
Sbjct: 1 MPLPRRKKWTEAEERTLIDKYGEMVCDGTLAKMKTREKKYRPIALHVNSMHHVCDPIVYPWQWTWKDVSTKVQNMRHQYSLVKQKIKKPELVG-DSGGEEFDWVEGLTHWSNFLRYKEVFGDVALVFNSNDAMVVATGNNENGGGFDVNGHGMEIVQLGHLGHAEDGDFAVGIDRGENGLMGLEFEYDGEEGEENCNSNNN-NMKEDGDDGFVYEGVEPTGSDTRKKRKVLKGLEKKAWGFLANQLGQLREMESRFEQREAERERERQRRENLRIEIEQEREWKWEEREKEREEREKAREKLRRQRIQELEAMEKESEERERRRREEELIYEREWEERMNQRRSEWKKRTDEMLSQHQTEMGQIQTRILHEQQNLTSQLLGIVSQWTGHPTGLSDHTGASNHYLSQMMQNLHHVNGIVHGDTRVEGDNQDDQFIVD 434
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4KZG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9452893.1}) (Fragment))
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 321/437 (73.46%), Postives = 367/437 (83.98%), Query Frame = 0
Match: A0A6A4KZG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9452893.1}) (Fragment))
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 321/437 (73.46%), Postives = 367/437 (83.98%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSGGEEFDWVEGLTHWSNFLRYKEIFGDVGPVFVGNDSMVVG---NNENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGGNSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MPP RRKKW+EAEERTLIDKYGEMVCDGSLAKMKTREKK++PI+LYVNSVHH+RDPI++PWQWTWKDV TKVQNMRHQYSLVKQKIKKTE VG DSG EEFDWVEGLTHWSNFLRYKE+FGDV VF +DS+VV NNE +GFDG+ HGM++ FG LG +GDF G DG NGV+GL+FEYDG+EGE+N N N KED D+GFVY+D+EP GSDTRKKRKVLKG+ K+AWGFLANQLGQLRE ETRFE REVERERERQRRE+ R E E RE+KWE+RE ER++R +KLR+QR EWE+ME ESEER RRRREE+L+YE E EER++RRRLEWKK+IDE L QHR EM QIQTRILHEQQNLT +LG+VSQWTG G+ DHT A NHY+SQM+QN+H +N IVHGDTRVE D+QDDQFI+D
Sbjct: 2 MPPPRRKKWTEAEERTLIDKYGEMVCDGSLAKMKTREKKYKPIALYVNSVHHVRDPITFPWQWTWKDVSTKVQNMRHQYSLVKQKIKKTEFVG-DSGVEEFDWVEGLTHWSNFLRYKEVFGDVALVFGSSDSVVVAGLDNNEIADGFDGSGHGMEIPEFGHLGHDGEGDFAVGFDGGENGVMGLDFEYDGDEGEDNHNCANPS--KEDADDGFVYEDVEPSGSDTRKKRKVLKGMGKRAWGFLANQLGQLRELETRFEHREVERERERQRRENHRVEIEHEREKKWEEREKEREDRERARDKLRKQRIREWEAMENESEERQRRRREEELIYEREWEERMSRRRLEWKKRIDEMLGQHRVEMGQIQTRILHEQQNLTSQMLGIVSQWTGHPTGLTDHTAAGNHYMSQMLQNLHQINSIVHGDTRVEDDNQDDQFIVD 435
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YG69 ((uncharacterized protein LOC104244494 {ECO:0000313|RefSeq:XP_009798234.1}))
HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 318/440 (72.27%), Postives = 368/440 (83.64%), Query Frame = 0
Match: A0A1U7YG69 ((uncharacterized protein LOC104244494 {ECO:0000313|RefSeq:XP_009798234.1}))
HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 318/440 (72.27%), Postives = 368/440 (83.64%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSG-GEEFDWVEGLTHWSNFLRYKEIFGDVGP-VFVGNDSM-VVGNN-ENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGG--NSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MP RRKKW+EAEERTLIDKYGEM+CDGSLAKMKTREKK+RPI+L+VNSVHH+RDPI+YPWQWTWKDV TKVQNMRHQY+LVKQKIKK S +SG GEEFDW+EGLTHWSNFLRYKE+FGDV VF +DSM VVG+ EN GFDG +G+ + FG LG DGDF GG++G +GV G+EF+YDGEEGE NFNG + +KED D+GFVY+D+E GSDTRKK+K+LKG++K+AWGFLA QL L+E E RFEQR+ ERERERQRREHLR E EQ RERKWE+RE ER+ER MEKL+RQR EWE MEKESEER RRRREEQL++E E EER+N+RRL+WKK+IDETL QHRA+MSQIQTRILHEQQNLT LLG+ SQWTG GI DHTGA NHYLSQM+QN+HHVN +VHGD RVEGD+Q+DQFI+D
Sbjct: 2 MPQPRRKKWTEAEERTLIDKYGEMLCDGSLAKMKTREKKYRPIALHVNSVHHVRDPITYPWQWTWKDVSTKVQNMRHQYTLVKQKIKKPNSGEDESGVGEEFDWMEGLTHWSNFLRYKEVFGDVNTLVFSCSDSMAVVGDGIENRVGFDGTGNGIGIDQFGHLGHAGDGDFAGGINGVDHGVTGMEFDYDGEEGEGNFNGNIRRNSHMKEDVDDGFVYEDIEATGSDTRKKKKMLKGVEKRAWGFLATQLAHLKEMEARFEQRDAERERERQRREHLRTELEQERERKWEEREREREEREKTMEKLQRQRIQEWEIMEKESEERERRRREEQLIFEREREERMNKRRLDWKKRIDETLGQHRADMSQIQTRILHEQQNLTSQLLGIFSQWTGHPTGISDHTGA-NHYLSQMIQNLHHVNGMVHGDARVEGDAQEDQFIVD 440
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XXF8 ((matrix metalloproteinase-2-like {ECO:0000313|RefSeq:XP_016444387.1}))
HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 318/440 (72.27%), Postives = 368/440 (83.64%), Query Frame = 0
Match: A0A1S3XXF8 ((matrix metalloproteinase-2-like {ECO:0000313|RefSeq:XP_016444387.1}))
HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 318/440 (72.27%), Postives = 368/440 (83.64%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGDSG-GEEFDWVEGLTHWSNFLRYKEIFGDVGP-VFVGNDSM-VVGNN-ENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGG--NSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MP RRKKW+EAEERTLIDKYGEM+CDGSLAKMKTREKK+RPI+L+VNSVHH+RDPI+YPWQWTWKDV TKVQNMRHQY+LVKQKIKK S +SG GEEFDW+EGLTHWSNFLRYKE+FGDV VF +DSM VVG+ EN GFDG +G+ + FG LG DGDF GG++G +GV G+EF+YDGEEGE NFNG + +KED D+GFVY+D+E GSDTRKK+K+LKG++K+AWGFLA QL L+E E RFEQR+ ERERERQRREHLR E EQ RERKWE+RE ER+ER MEKL+RQR EWE MEKESEER RRRREEQL++E E EER+N+RRL+WKK+IDETL QHRA+MSQIQTRILHEQQNLT LLG+ SQWTG GI DHTGA NHYLSQM+QN+HHVN +VHGD RVEGD+Q+DQFI+D
Sbjct: 2 MPQPRRKKWTEAEERTLIDKYGEMLCDGSLAKMKTREKKYRPIALHVNSVHHVRDPITYPWQWTWKDVSTKVQNMRHQYTLVKQKIKKPNSGEDESGVGEEFDWMEGLTHWSNFLRYKEVFGDVNTLVFSCSDSMAVVGDGIENRVGFDGTGNGIGIDQFGHLGHAGDGDFAGGINGVDHGVTGMEFDYDGEEGEGNFNGNIRRNSHMKEDVDDGFVYEDIEATGSDTRKKKKMLKGVEKRAWGFLATQLAHLKEMEARFEQRDAERERERQRREHLRTELEQERERKWEEREREREEREKTMEKLQRQRIQEWEIMEKESEERERRRREEQLIFEREREERMNKRRLDWKKRIDETLGQHRADMSQIQTRILHEQQNLTSQLLGIFSQWTGHPTGISDHTGA-NHYLSQMIQNLHHVNGMVHGDARVEGDAQEDQFIVD 440
BLAST of XM_017371018.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KRL1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT31923.1}))
HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 313/441 (70.98%), Postives = 366/441 (82.99%), Query Frame = 0
Match: A0A314KRL1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT31923.1}))
HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 313/441 (70.98%), Postives = 366/441 (82.99%), Query Frame = 0
Query: 1 MPPSRRKKWSEAEERTLIDKYGEMVCDGSLAKMKTREKKFRPISLYVNSVHHIRDPISYPWQWTWKDVCTKVQNMRHQYSLVKQKIKKTESVGGD--SGGEEFDWVEGLTHWSNFLRYKEIFGDVGP-VFVGNDSM-VVGNN-ENGEGFDGNSHGMDVVPFGDLGQGEDGDFGGGMDG--NGVLGLEFEYDGEEGEENFNGG--NSGLLKEDGDNGFVYQDLEPMGSDTRKKRKVLKGLDKKAWGFLANQLGQLRESETRFEQREVERERERQRREHLRAENEQLRERKWEQRENERQERVNDMEKLRRQRTSEWESMEKESEERFRRRREEQLMYETELEERINRRRLEWKKKIDETLNQHRAEMSQIQTRILHEQQNLTGHLLGMVSQWTGPSAGIPDHTGASNHYLSQMMQNMHHVNDIVHGDTRVEGDSQDDQFIID 432
MP RRKKW+EAEERTLIDKYGEM+CDG+LAKMKTREKK+RPI+L+VNSVHH+RDPI+YPWQWTWKDV TKVQNMRHQY+LVKQKIKK+ S G D + EEFDW+EGLTHWSNFLRYKE+FGDV VF DSM VVG+ ENG GFDG+ +G+ + FG LG DGDF GG++G +GV G+EF+YDGEEGE NFNG + +KED D+GFVY+D+E GSDTRKK+K+ KG++K+ WGFLA QL QL+E E RFEQR+ ERERERQRREHLR E EQ RERKWE+RE ER+ER +EKL+RQR EWE MEKE EER RRRREEQL++E E EER+N+RR +WKK+IDETL QHRAEMSQIQTRILHEQQNLT LLG+ SQWTG G+ DHTGA NHYLSQM+QN+HHVN +VHGD RVEGD+Q+DQFI+D
Sbjct: 2 MPQPRRKKWTEAEERTLIDKYGEMLCDGTLAKMKTREKKYRPIALHVNSVHHVRDPITYPWQWTWKDVSTKVQNMRHQYTLVKQKIKKSNS-GEDESAAAEEFDWMEGLTHWSNFLRYKEVFGDVNTLVFNCGDSMAVVGDGIENGVGFDGSGNGIGIDQFGHLGNAGDGDFAGGINGVDHGVTGMEFDYDGEEGEGNFNGNIRRNSHMKEDADDGFVYEDIEATGSDTRKKKKMFKGVEKRTWGFLATQLAQLKEMEARFEQRDAERERERQRREHLRMEFEQERERKWEEREREREEREKTVEKLQRQRIQEWEIMEKECEERERRRREEQLIFEREREERMNKRRSDWKKRIDETLGQHRAEMSQIQTRILHEQQNLTSQLLGIFSQWTGHPTGLSDHTGA-NHYLSQMIQNLHHVNGMVHGDARVEGDTQEDQFIVD 440
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6RXQ8 | E-Value: 0.000e+0, PID: 75.06 | (SH3 and multiple ankyrin repeat domains protein l... [more] |
| A0A6P6WQ98 | E-Value: 0.000e+0, PID: 69.11 | (uncharacterized protein LOC113734493 isoform X1 {... [more] |
| A0A834L5M2 | E-Value: 0.000e+0, PID: 73.00 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7116... [more] |
| A0A6P6WZY8 | E-Value: 0.000e+0, PID: 68.65 | (uncharacterized protein LOC113736352 isoform X1 {... [more] |
| A0A2R6RS04 | E-Value: 0.000e+0, PID: 74.37 | (Uncharacterized protein {ECO:0000313|EMBL:PSS3280... [more] |
| A0A5B6ZFX6 | E-Value: 0.000e+0, PID: 77.06 | (Putative stress response protein NST1-like {ECO:0... [more] |
| A0A6A4KZG0 | E-Value: 0.000e+0, PID: 73.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9452... [more] |
| A0A1U7YG69 | E-Value: 0.000e+0, PID: 72.27 | (uncharacterized protein LOC104244494 {ECO:0000313... [more] |
| A0A1S3XXF8 | E-Value: 0.000e+0, PID: 72.27 | (matrix metalloproteinase-2-like {ECO:0000313|RefS... [more] |
| A0A314KRL1 | E-Value: 0.000e+0, PID: 70.98 | (Uncharacterized protein {ECO:0000313|EMBL:OIT3192... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |