XM_017368834.1

Resource Type: 
Polypeptide
Name: 
XM_017368834.1
Identifier: 
XM_017368834.1-protein
Sequence: 
MGNVNGREEGDLDSPSAGRDMAAEDGGVIVDGEFMGPSPPSSPRAAQSPL
MFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDA
NEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAP
DLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAE
DFAKEPPIVPPHLQMTLLNVPSQPMEIPPPSRPQHVVLNHLYMQKGRSSS
AVVALGSTHRFFSKYVTVVVYKSTQR
Sequence Length: 
276
Sequence Checksum: 
54a5b95bd77e619caa08c667900b7890
View location in JBrowse: 
DCARv2_Chr9:30299580..30303738+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017368834.1, derives from mRNA, XM_017368834.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C670 (AMPKBI domain-containing protein {ECO:0000259|SMART:SM01010})

HSP 1 Score: 441.425 bits (1134), Expect = 1.277e-155
Identity = 221/291 (75.95%), Postives = 237/291 (81.44%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSAGRDMAAEDGGV---------------IVDGEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPPSRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGNV+GRE+GD      G    AEDGGV                 DGE MG SPP +PRAA SPLMFTPQ PVVPLQRPDEMHIPS SWMQTTS YEDI SEQGIPTMITWSYD  EV VEGSWD+WKTRKPLQRSGKDFTI+KVLPSGVY+YRFIVDGQWRYAPD+P  QDDAGNA NILDLQ+YVPEDI+SI+GF PPQSP+SSYNN QLG ED+AKEPP+VPPHLQMTLLNVPS    +PP SRPQHVVLNHLYMQKGR   +VVALGSTHRF SKYVTVV+YKS QR
Sbjct:    1 MGNVSGREDGDA---GGGSPSGAEDGGVGGALDDMAPLDAAHGDGDGELMGQSPPPTPRAAHSPLMFTPQVPVVPLQRPDEMHIPSHSWMQTTSGYEDICSEQGIPTMITWSYDGKEVSVEGSWDNWKTRKPLQRSGKDFTIMKVLPSGVYQYRFIVDGQWRYAPDMPCAQDDAGNACNILDLQDYVPEDIKSISGFEPPQSPESSYNNLQLGCEDYAKEPPLVPPHLQMTLLNVPSSTEILPPFSRPQHVVLNHLYMQKGRGGPSVVALGSTHRFLSKYVTVVLYKSLQR 288
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B3U7 (AMPKBI domain-containing protein {ECO:0000259|SMART:SM01010})

HSP 1 Score: 435.261 bits (1118), Expect = 3.999e-153
Identity = 220/291 (75.60%), Postives = 239/291 (82.13%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSA---GRDMAAEDGGVIVDG-----------EFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGN NGRE+G   SPS    G    A+D    +DG           E MG SPP SPRAA SPLMFTPQ PVVPLQRP EMHIPS SWMQTTS YED+  EQGIPTMITWSY+  EVFVEGSWD+WKTRKPLQ+SGKDFTI+KVLPSGVY+YRFIVDGQWRYAPD+PW QDDAGN  NILDLQ+YVPED+ESI+GF PPQSP+SSYNN QLG+ED+AKEPP+VPPHLQMTLLNVPS  MEIPPP SRPQHVVLNHLYMQKGR   +VVALGSTHRF SKYVTVV+YKS QR
Sbjct:    1 MGNANGREDGG-GSPSGVDEGGVGDAQDDTTPLDGPHVRYHSHGDAELMGQSPPPSPRAAHSPLMFTPQVPVVPLQRPGEMHIPSHSWMQTTSEYEDMCCEQGIPTMITWSYEGKEVFVEGSWDNWKTRKPLQKSGKDFTIMKVLPSGVYQYRFIVDGQWRYAPDMPWAQDDAGNTCNILDLQDYVPEDVESISGFEPPQSPESSYNNLQLGSEDYAKEPPLVPPHLQMTLLNVPSSYMEIPPPHSRPQHVVLNHLYMQKGRGGPSVVALGSTHRFLSKYVTVVLYKSLQR 290
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834X8S1 ((SNF1-related protein kinase regulatory subunit beta-2 {ECO:0000313|EMBL:KAF7840516.1}))

HSP 1 Score: 429.869 bits (1104), Expect = 3.706e-151
Identity = 215/285 (75.44%), Postives = 238/285 (83.51%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSAGRDMAAEDGGV--------IVDGEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGNVN RE+G+  SPS   +     G V         V  E MG SPP+SPRA QSPLMFTPQ PVVPLQRPDEM  PS SWMQ +SAYED+ SEQGIPTMITWSYD  EV VEGSWD+WKTR PLQRSGKDFTI+KVLPSGVY+YRF+VDGQWRYA DLPW QDDAGNAYNILDLQ+YVPEDI SI+GF PPQSPDSSY+N QLG+ED+AKEPP+VPPHLQMTLLN+P+  MEIPPP SRPQHVVLNHLYMQKG+SS +VVALG+THRF +KYVTVV+YKS QR
Sbjct:    1 MGNVNAREDGN-GSPSGAEEEGGGSGSVQEGISASNAVSSELMGQSPPTSPRATQSPLMFTPQVPVVPLQRPDEMQAPSHSWMQASSAYEDMCSEQGIPTMITWSYDGKEVAVEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVYQYRFLVDGQWRYALDLPWAQDDAGNAYNILDLQDYVPEDIGSISGFEPPQSPDSSYSNLQLGSEDYAKEPPLVPPHLQMTLLNIPATNMEIPPPLSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFLAKYVTVVLYKSLQR 284
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QM04 ((SNF1-related protein kinase regulatory subunit beta-2 like {ECO:0000313|EMBL:PSS10440.1}))

HSP 1 Score: 429.869 bits (1104), Expect = 4.418e-151
Identity = 215/288 (74.65%), Postives = 241/288 (83.68%), Query Frame = 0
 
Query:    1 MGNVNGREEGD-------LDSPSAGRDMAAEDGGV----IVDGEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGN NGRE+GD       ++  +AG   A +D  V        + MG SPPSSPRAAQSPLMFTPQ PV+PLQRPDE+H PS SWM+T + YEDI SEQGIPTMITWSYD  EV VEGSWD+WK+RKPLQRSGKDFT++KVLPSGVY+YRFIVDGQWRYAPD+PW QDD GNAYNILDLQ+YVPED+ESI+GF  PQSP+SSYNN QLG+ED+AKEPP+VPPHLQ TLLNVPS  MEIPPP SRPQHVVLNHLYMQKGRSS +VVALGSTHRF +KYVTVV+YKS QR
Sbjct:    1 MGNANGREDGDGGGASGGVEEEAAGGSGALDDMAVPPHPHAHTDLMGHSPPSSPRAAQSPLMFTPQVPVLPLQRPDEIHAPSHSWMETATGYEDICSEQGIPTMITWSYDGTEVSVEGSWDNWKSRKPLQRSGKDFTLMKVLPSGVYQYRFIVDGQWRYAPDMPWAQDDTGNAYNILDLQDYVPEDVESISGFESPQSPESSYNNLQLGSEDYAKEPPLVPPHLQTTLLNVPSSYMEIPPPLSRPQHVVLNHLYMQKGRSSPSVVALGSTHRFLAKYVTVVLYKSIQR 288
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6K5H9 (AMPKBI domain-containing protein {ECO:0000259|SMART:SM01010})

HSP 1 Score: 425.246 bits (1092), Expect = 2.702e-149
Identity = 214/287 (74.56%), Postives = 237/287 (82.58%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSAG------RDMAAEDGGVIV----DGEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGN+NGRE+G       G       D+AA+D   I     DGEFMG SPP SPR + SPLMFTPQ PV PLQRPDEM  P+ SWM T+S+YED+ SEQGIPTMITWSYD  EV VEGSWD+WKTRK LQRSGKDF ILKVLPSGVY+YRF+VDGQWRY+PD+PWTQD+AGN YNILDLQEYVPEDI+SI+GF PPQSPDSSYNN QLG ED+AKEPP+VPPHLQMTLLN PS  MEIPPP SRPQHVV+NHLYMQKGRSS +VVALGSTHRF SKYVTVV+YKS  +
Sbjct:    1 MGNINGREDGGGAGGDGGSTSSIGNDVAAQDANYIARTGDDGEFMGHSPPPSPRVSGSPLMFTPQVPVAPLQRPDEMQ-PNNSWMHTSSSYEDMMSEQGIPTMITWSYDGKEVAVEGSWDNWKTRKALQRSGKDFIILKVLPSGVYQYRFVVDGQWRYSPDVPWTQDEAGNTYNILDLQEYVPEDIQSISGFDPPQSPDSSYNNLQLGCEDYAKEPPLVPPHLQMTLLNAPSPHMEIPPPSSRPQHVVINHLYMQKGRSSDSVVALGSTHRFLSKYVTVVLYKSIHQ 286
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N222 (AMPKBI domain-containing protein {ECO:0000259|SMART:SM01010})

HSP 1 Score: 425.246 bits (1092), Expect = 2.702e-149
Identity = 214/287 (74.56%), Postives = 237/287 (82.58%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSAG------RDMAAEDGGVIV----DGEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGN+NGRE+G       G       D+AA+D   I     DGEFMG SPP SPR + SPLMFTPQ PV PLQRPDEM  P+ SWM T+S+YED+ SEQGIPTMITWSYD  EV VEGSWD+WKTRK LQRSGKDF ILKVLPSGVY+YRF+VDGQWRY+PD+PWTQD+AGN YNILDLQEYVPEDI+SI+GF PPQSPDSSYNN QLG ED+AKEPP+VPPHLQMTLLN PS  MEIPPP SRPQHVV+NHLYMQKGRSS +VVALGSTHRF SKYVTVV+YKS  +
Sbjct:    1 MGNINGREDGGGAGGDGGSTSSIGNDVAAQDANYIARTGDDGEFMGHSPPPSPRVSGSPLMFTPQVPVAPLQRPDEMQ-PNNSWMHTSSSYEDMMSEQGIPTMITWSYDGKEVAVEGSWDNWKTRKALQRSGKDFIILKVLPSGVYQYRFVVDGQWRYSPDVPWTQDEAGNTYNILDLQEYVPEDIQSISGFDPPQSPDSSYNNLQLGCEDYAKEPPLVPPHLQMTLLNAPSPHMEIPPPSSRPQHVVINHLYMQKGRSSDSVVALGSTHRFLSKYVTVVLYKSIHQ 286
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U7P2 ((SNF1-related protein kinase regulatory subunit beta-2-like {ECO:0000313|RefSeq:XP_027086181.1}))

HSP 1 Score: 424.091 bits (1089), Expect = 1.147e-148
Identity = 220/291 (75.60%), Postives = 243/291 (83.51%), Query Frame = 0
 
Query:    1 MGNVNGREEG-DLDSPS----------AGRDMAAEDG--GVIVD-GEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGNVNGRE+G D +SPS          A + +AA++G  G   D GEFMG SPP SPRA+ SPLMF PQ PVVPLQRPDEMHIPSPSWMQT S ++D+  EQGIPTMITWSYD NEV VEGSWD+WKTR  L+RSGKDFTI+KVLPSGVY+YRFIVDGQW+Y PD+PW  D+AGN  NILDLQ+YVPEDIESI+GF PPQSP+SSYNN QL AED+AKEPP+VPPHLQMTLLNVPS  MEIPPP SRPQHVVLNHLYMQKGRS S VVALGSTHRF SKYVTVV+YKS QR
Sbjct:    1 MGNVNGREDGGDGNSPSGLDAEDGGGGAQQSLAAQEGRYGNHADVGEFMGQSPPPSPRASHSPLMFRPQMPVVPLQRPDEMHIPSPSWMQTMSGHDDMYYEQGIPTMITWSYDGNEVAVEGSWDNWKTRTLLERSGKDFTIMKVLPSGVYQYRFIVDGQWKYLPDMPWIHDEAGNPCNILDLQDYVPEDIESISGFEPPQSPESSYNNLQLVAEDYAKEPPLVPPHLQMTLLNVPSAHMEIPPPFSRPQHVVLNHLYMQKGRSPS-VVALGSTHRFLSKYVTVVLYKSIQR 290
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UD00 ((SNF1-related protein kinase regulatory subunit beta-2 {ECO:0000313|RefSeq:XP_011095912.1}))

HSP 1 Score: 421.779 bits (1083), Expect = 6.029e-148
Identity = 209/284 (73.59%), Postives = 234/284 (82.39%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSAGRDMAAEDGGVIVD-------GEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGN NGREEG     ++G D  A     + D       GE+MG SPP SPRA+QSPLMF PQ PVVPLQRPDE+HIPSPSWMQT+S YED+  EQG+PTMITWSY   EV VEGSWDDWK+RKPLQ+SGKDFTI+KVLPSGVY+YRF+VDGQ RY+PD PW QDD+GNAYNILDLQ+YVPEDI+SI+GF PPQSPDSSYNN QLG EDFAKEPP+VPPHL +TLLN PS  MEIPPP SRPQHVVLNHLYM + RS  +VVALGST+RF SKYVTVV+YKS QR
Sbjct:    1 MGNANGREEGGGSDSASGVDETAAPQVSMADQDVVQGGGEYMGQSPPPSPRASQSPLMFRPQMPVVPLQRPDELHIPSPSWMQTSSGYEDMYDEQGVPTMITWSYGGKEVAVEGSWDDWKSRKPLQKSGKDFTIMKVLPSGVYQYRFLVDGQRRYSPDQPWEQDDSGNAYNILDLQDYVPEDIDSISGFEPPQSPDSSYNNLQLGQEDFAKEPPMVPPHLNLTLLNAPSPQMEIPPPYSRPQHVVLNHLYMHRDRSRPSVVALGSTNRFLSKYVTVVLYKSIQR 284
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UIC6 ((SNF1-related protein kinase regulatory subunit beta-2-like {ECO:0000313|RefSeq:XP_027089537.1}))

HSP 1 Score: 421.779 bits (1083), Expect = 7.887e-148
Identity = 217/291 (74.57%), Postives = 243/291 (83.51%), Query Frame = 0
 
Query:    1 MGNVNGREEG-DLDSPS----------AGRDMAAEDG--GVIVD-GEFMGPSPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGNVNGRE+G D +SPS          A + +AA++G  G   D GEFMG SPP SPRA+ SPLMF PQ PVVPLQRPDEMHIPSPSWMQT S ++D+  EQGIPTMITWSYD NEV VEGSWD+WKTR  L+RSGKDFTI+KVLPSGVY+YRFIVDGQW+Y PD+PW  D+AGN  NILDLQ+YVPEDIES++GF PPQSP+SSYNN QL AED+AKEPP+VPPHLQMTLLN+PS  +EIPPP SRPQHVVLNHLYMQKGRS S VVALGSTHRF SKYVTVV+YKS QR
Sbjct:    1 MGNVNGREDGGDGNSPSGLDAEDGGGGAQQSLAAQEGRYGNHADVGEFMGQSPPPSPRASHSPLMFRPQMPVVPLQRPDEMHIPSPSWMQTMSGHDDMYYEQGIPTMITWSYDGNEVAVEGSWDNWKTRTLLERSGKDFTIMKVLPSGVYQYRFIVDGQWKYLPDMPWIHDEAGNPCNILDLQDYVPEDIESVSGFEPPQSPESSYNNLQLVAEDYAKEPPLVPPHLQMTLLNIPSAHLEIPPPFSRPQHVVLNHLYMQKGRSPS-VVALGSTHRFLSKYVTVVLYKSIQR 290
[Close]
BLAST of XM_017368834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4DRL1 ((SNF1-related protein kinase regulatory subunit beta-2-like {ECO:0000313|RefSeq:XP_016516065.1}))

HSP 1 Score: 420.239 bits (1079), Expect = 2.130e-147
Identity = 208/281 (74.02%), Postives = 240/281 (85.41%), Query Frame = 0
 
Query:    1 MGNVNGREEGDLDSPSAGRDMAAEDGGV---IVDGEFMGP-SPPSSPRAAQSPLMFTPQAPVVPLQRPDEMHIPSPSWMQTTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPEDIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLNVPSQPMEIPPP-SRPQHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKSTQR 276
            MGNVNGREE   +S S      +    V   I+DGE +G  SPPSSPRA+QSPLMF PQ PVVPLQRP+E+HIP+PSWMQTTS Y+D++ EQG+PT+I+W++D  EV VEGSWD+WK+R PLQRSGKDFTILKVLPSGVY+YRFIVDGQWR +PDLP  QD+ GN YNILD+++YVPEDIESI+GF PPQSPDSSY+N QLGAED+AKEPP+VPPHLQMTLLNVPS  MEIPPP SRPQHVVLNHLYMQKGRS+ +VVALGST+RF SKYVTVV+YKS QR
Sbjct:    1 MGNVNGREEVSGNSQSGFEGSGSGVAVVHDNIMDGELIGAHSPPSSPRASQSPLMFRPQMPVVPLQRPEEVHIPNPSWMQTTSGYDDLNDEQGVPTLISWTHDGKEVAVEGSWDNWKSRNPLQRSGKDFTILKVLPSGVYQYRFIVDGQWRCSPDLPSVQDEVGNTYNILDVKDYVPEDIESISGFEPPQSPDSSYSNLQLGAEDYAKEPPLVPPHLQMTLLNVPSSHMEIPPPLSRPQHVVLNHLYMQKGRSTPSVVALGSTNRFLSKYVTVVLYKSIQR 281
Match NameStatsDescription
A0A5B7C670E-Value: 1.277e-155, PID: 75.95AMPKBI domain-containing protein {ECO:0000259|SMAR... [more]
A0A5J5B3U7E-Value: 3.999e-153, PID: 75.60AMPKBI domain-containing protein {ECO:0000259|SMAR... [more]
A0A834X8S1E-Value: 3.706e-151, PID: 75.44(SNF1-related protein kinase regulatory subunit be... [more]
A0A2R6QM04E-Value: 4.418e-151, PID: 74.65(SNF1-related protein kinase regulatory subunit be... [more]
A0A2J6K5H9E-Value: 2.702e-149, PID: 74.56AMPKBI domain-containing protein {ECO:0000259|SMAR... [more]
A0A6S7N222E-Value: 2.702e-149, PID: 74.56AMPKBI domain-containing protein {ECO:0000259|SMAR... [more]
A0A6P6U7P2E-Value: 1.147e-148, PID: 75.60(SNF1-related protein kinase regulatory subunit be... [more]
A0A6I9UD00E-Value: 6.029e-148, PID: 73.59(SNF1-related protein kinase regulatory subunit be... [more]
A0A6P6UIC6E-Value: 7.887e-148, PID: 74.57(SNF1-related protein kinase regulatory subunit be... [more]
A0A1S4DRL1E-Value: 2.130e-147, PID: 74.02(SNF1-related protein kinase regulatory subunit be... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.