XM_017371026.1

Resource Type: 
Polypeptide
Name: 
XM_017371026.1
Identifier: 
XM_017371026.1-protein
Sequence: 
MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQ
RFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKS
YFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLD
KSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNG
RAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLA
LAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNAT
TTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTG
HIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDSKHWSIGKSST
Sequence Length: 
398
Sequence Checksum: 
9555333da7ac55b7e88beca68c3676fe
View location in JBrowse: 
DCARv2_Chr9:30543499..30545483-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017371026.1, derives from mRNA, XM_017371026.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZJB5 ((tonoplast dicarboxylate transporter {ECO:0000313|RefSeq:XP_015878550.1}))

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 295/388 (76.03%), Postives = 345/388 (88.92%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDS 388
            + +T+LF GEPLNP +LLLGICGT+AF+SMWMHN A ALMMMPVATGILQRFPTG     V  KFC+AVV+GV YS  +GG+STLTGTGVNLILVGM+KSYFPEADPI+F+ + LFGFPLAL IF A+W++LC ++ P+GSG  LS YLDK+HL+REL MLGPMAFAEKM+L +FS+LI LWMTRSITDDIPGW ALFNGRAGDGTVSVMMATLLFIIPNKKQ GEKLMDWNKCKKLPW I+LLLGAG A+A+GV+TSGLT++LSKALDFLE+VPYLA+APAVCLI  T+TEF TSNNATTTLV+PLLI+I  +MHVHPLLL++PG+IGAQ +FLLPT TPSNV+GF+TGHI++KDM+K GIPLK AGI  LS++MPTLGA+VFGT+ 
Sbjct:  158 LNMTLLFCGEPLNPPVLLLGICGTSAFVSMWMHNVAAALMMMPVATGILQRFPTGSAQSPVVNKFCRAVVIGVTYSVAVGGMSTLTGTGVNLILVGMYKSYFPEADPISFNKWFLFGFPLALLIFIALWVMLCCFYCPRGSGQVLSAYLDKAHLRRELQMLGPMAFAEKMVLAVFSVLIVLWMTRSITDDIPGWAALFNGRAGDGTVSVMMATLLFIIPNKKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLTDILSKALDFLEEVPYLAIAPAVCLISGTITEF-TSNNATTTLVIPLLIQITHSMHVHPLLLLVPGAIGAQFSFLLPTATPSNVVGFSTGHIEIKDMIKLGIPLKIAGIAALSLLMPTLGAYVFGTNE 544
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498JVJ6 ((Uncharacterized protein {ECO:0000313|EMBL:RXH99470.1}))

HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 299/388 (77.06%), Postives = 349/388 (89.95%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDS 388
            + IT+LF G+PL+P +LLLGIC TTAF+SMWMHN A A++MMPVATGILQRFP GP   V  +KFC+AVVLGVIYSA IGG+STLTGTGVNLILVGMWKSYFPEA PI+FST+   GFPLAL IF A+W+ILC  + P+ SG  LS YLDK+HLKREL+MLGPMAFAEKM+L +FS+LI LWMTRSITDDIPGWG+LFNGRAGDGTVSVMMATLLFIIPNKKQ GEKLMDWNKCKKLPW I+LLLGAG A+A+GV+TSGL ++LSKALDFLE VPY+A+APAVCLI +T+TEF TSNNATTTLV+PLLI+IAK+MHVHPLLLM+PG+IGAQ +FLLPTGTPSN++GFTTGHI+++DM+KTG+PLK AG VVLS++MPTLGA+VFGT+ 
Sbjct:  140 LNITMLFCGDPLSPPLLLLGICATTAFVSMWMHNVAAAVIMMPVATGILQRFPVGPDQSVAESKFCRAVVLGVIYSAAIGGMSTLTGTGVNLILVGMWKSYFPEAKPISFSTWFFLGFPLALLIFLALWVILCCLYCPRNSGQALSAYLDKAHLKRELEMLGPMAFAEKMVLAVFSMLIVLWMTRSITDDIPGWGSLFNGRAGDGTVSVMMATLLFIIPNKKQEGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADILSKALDFLEAVPYMAIAPAVCLISSTITEF-TSNNATTTLVVPLLIQIAKSMHVHPLLLMIPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGTVVLSLLMPTLGAYVFGTNE 526
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540K7Y2 ((Uncharacterized protein {ECO:0000313|EMBL:TQD70002.1}))

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 299/388 (77.06%), Postives = 349/388 (89.95%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDS 388
            + IT+LF G+PL+P +LLLGIC TTAF+SMWMHN A A++MMPVATGILQRFP GP   V  +KFC+AVVLGVIYSA IGG+STLTGTGVNLILVGMWKSYFPEA PI+FST+   GFPLAL IF A+W+ILC  + P+ SG  LS YLDK+HLKREL+MLGPMAFAEKM+L +FS+LI LWMTRSITDDIPGWG+LFNGRAGDGTVSVMMATLLFIIPNKKQ GEKLMDWNKCKKLPW I+LLLGAG A+A+GV+TSGL ++LSKALDFLE VPY+A+APAVCLI +T+TEF TSNNATTTLV+PLLI+IAK+MHVHPLLLM+PG+IGAQ +FLLPTGTPSN++GFTTGHI+++DM+KTG+PLK AG VVLS++MPTLGA+VFGT+ 
Sbjct:  140 LNITMLFCGDPLSPPLLLLGICATTAFVSMWMHNVAAAVIMMPVATGILQRFPVGPDQSVAESKFCRAVVLGVIYSAAIGGMSTLTGTGVNLILVGMWKSYFPEAKPISFSTWFFLGFPLALLIFLALWVILCCLYCPRNSGQALSAYLDKAHLKRELEMLGPMAFAEKMVLAVFSMLIVLWMTRSITDDIPGWGSLFNGRAGDGTVSVMMATLLFIIPNKKQEGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADILSKALDFLEAVPYMAIAPAVCLISSTITEF-TSNNATTTLVVPLLIQIAKSMHVHPLLLMIPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGTVVLSLLMPTLGAYVFGTNE 526
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067K9K7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP32916.1}))

HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 297/391 (75.96%), Postives = 344/391 (87.98%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRS--DVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDSK 389
            + IT +F G+PLNPQ+LLLGICGTTAF+SMWMHN A A+MMMPVATGILQR P GP    + V   FCKAVVLGVIYSA +GG+STLTGTGVNLILVGMWKSYFP ADPI+FST++ FGFPLAL IFFA+W ILCL +  KGSG  LS YLD++HLKREL MLGPMAFAEKMIL IF +LI LWMTRS+TD+ PGWGALFNGRAGDGTVSVMMATLLFIIPNKK+ GEKLMDWNKCKKLPW I+LLLGAG A+A+GV++SGL +VLSKALDFLE+ PY+A+AP VCLI AT+TEF TSNNATTTL++PLLI+IAKTM+VHPLLLM+PG+IGAQ AFLLPTGTPSN++GFTTGHI++KDM+KTG+PLK  GI  LS +MPTLG++VF T+ +
Sbjct:  148 LNITQMFCGDPLNPQLLLLGICGTTAFVSMWMHNVAAAVMMMPVATGILQRLPMGPNQAQNNVVRNFCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKSYFPLADPISFSTWLFFGFPLALIIFFALWAILCLLYCSKGSGQVLSAYLDRAHLKRELQMLGPMAFAEKMILAIFGMLIVLWMTRSLTDETPGWGALFNGRAGDGTVSVMMATLLFIIPNKKRKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRSSGLADVLSKALDFLEEAPYVAIAPLVCLISATITEF-TSNNATTTLLVPLLIQIAKTMNVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIKDMIKTGLPLKIVGIAALSFLMPTLGSYVFKTNGE 537
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5CCL1 ((Sodium/sulfate symporter {ECO:0000313|EMBL:PON58768.1}))

HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 288/389 (74.04%), Postives = 343/389 (88.17%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDSK 389
            + IT+LF G+P+ P +LLLGIC TTAF+SMWMHN A AL+MMPVATGILQRFP GP       KFC+AVVLGVIY A +GG+STLTGTGVNLILVGMWKSYFPE +PI+F+T+  FGFPLA+ IFFA+W ILC  ++ +GS   LS YLDK+HLKREL +LGPM+FAEKM+L++FS+L+ LWMTRS+TDDIPGWGALF GRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPW I+LLLGAG A+A+GV+TSGL ++LSKALDFLE+ PYLA+APAVCLI + +TEF TSNNATTTLV+PLLI+IAK+MHVHPLLLM+PG+IGAQ +FLLPTGTPSN++GF TGHI++ DM+KTG+PLK  GI VLS++MP+LGA+VFGTD +
Sbjct:  148 LNITLLFCGDPVKPPLLLLGICATTAFVSMWMHNVAAALLMMPVATGILQRFPVGPAQSDQVNKFCRAVVLGVIYGAAVGGMSTLTGTGVNLILVGMWKSYFPEENPISFNTWFFFGFPLAVLIFFALWGILCCLYIKRGSAQALSAYLDKAHLKRELQVLGPMSFAEKMVLSVFSMLVVLWMTRSLTDDIPGWGALFKGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADILSKALDFLEETPYLAIAPAVCLISSIITEF-TSNNATTTLVVPLLIQIAKSMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFATGHIEMSDMIKTGLPLKIVGIAVLSLLMPSLGAYVFGTDKQ 535
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1PDP4 ((Sodium/sulfate symporter {ECO:0000313|EMBL:PWA83876.1}))

HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0
Identity = 291/382 (76.18%), Postives = 336/382 (87.96%), Query Frame = 0
 
Query:    3 ITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVF 384
            IT+LF G+P+NPQ+LLLGIC TTAF+SMWMHN A A+MMMPVATGILQR P+GP    V +KFCKAVVLGVIYSA IGG+STLTGTGVNLILVGMWKSYFPEA+PI+FST+  FGFP+AL +FFA+W ILCL +VP+G G TLS YLDK+HLKRELD+LGPMAFAEKM+L  FS LI LWMTRSITDDIPGWG+ FN RAGDGTVSVMMATLLFIIPNKKQ GEKLMDWNKCKK+PW IVLLLGAG A+AEGV+TSGL + LSK+LDFL Q PYLAM P +C+I   +TE ITSNNATTTL++P+LI+IA+ ++VHPLLLM+PG+IGAQ AFLLPT TPSN++GFTTGHI++ DMLKTG PLK AG + LS++MPTLGAFVF
Sbjct:  233 ITLLFCGDPMNPQLLLLGICATTAFVSMWMHNVACAVMMMPVATGILQRLPSGPGESPVISKFCKAVVLGVIYSAAIGGMSTLTGTGVNLILVGMWKSYFPEANPISFSTWFYFGFPMALVLFFALWAILCLVYVPRGCGDTLSAYLDKAHLKRELDLLGPMAFAEKMVLADFSALIVLWMTRSITDDIPGWGSFFNDRAGDGTVSVMMATLLFIIPNKKQEGEKLMDWNKCKKIPWNIVLLLGAGFAIAEGVRTSGLADDLSKSLDFLNQTPYLAMTPCICVISGVMTELITSNNATTTLLVPILIQIAQNINVHPLLLMVPGAIGAQFAFLLPTATPSNIVGFTTGHIEIVDMLKTGFPLKIAGALALSILMPTLGAFVF 614

HSP 2 Score: 149.058 bits (375), Expect = 4.502e-37
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILV 95
            + IT+LF G+P+NPQ+LLLGIC TTAF+SMWMHN A A+MMMPVATGILQR P+GP      +KFCKAVVLGVIYSA IGG+STLTGTGVNLIL+
Sbjct:  139 LNITLLFCGDPMNPQLLLLGICATTAFVSMWMHNVACAVMMMPVATGILQRLPSGPGESPEISKFCKAVVLGVIYSAAIGGMSTLTGTGVNLILI 233
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6Q277 ((Putative sodium/sulfate symporter {ECO:0000313|EMBL:PRQ28281.1}))

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 296/388 (76.29%), Postives = 345/388 (88.92%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDS 388
            + IT+LF G+PLNP +LLLGIC TTAF+SMWMHN + A+MMMP+ATGIL RFP GP   VV++KFC+AVVLGV YS  IGG+STLTGTGVNLILVGMWKSYFPE +PI+FST+ LFGFP+AL IF A+WIILC  +  K SGP LS YLDK+HLKREL+MLGPM+FAEKMIL +FS+LI LWMTRSITD+IPGWGALFNGRAGDGT SVMMATLLFIIPNKKQ GEKLMDWNKCKKLPW IVLLLGAG A+A+GV+TSGL  +LS+ALDFLEQVPYLA+APAVCLI +T+TE ITSNNATTTLV+PLLI+IAK+M+VHPLLLM+PG++GAQ AFLLPTGTPSN +GFTTGHI++KDM+K G+PLK AG  VL+++MPTLG +VFGT+ 
Sbjct:  141 LNITILFCGDPLNPPLLLLGICATTAFVSMWMHNVSAAVMMMPMATGILHRFPVGPDQSVVSSKFCRAVVLGVTYSTAIGGMSTLTGTGVNLILVGMWKSYFPEEEPISFSTWFLFGFPMALLIFLALWIILCCLYCSKSSGPALSGYLDKAHLKRELEMLGPMSFAEKMILAVFSMLIVLWMTRSITDEIPGWGALFNGRAGDGTASVMMATLLFIIPNKKQKGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEILSEALDFLEQVPYLAIAPAVCLISSTITELITSNNATTTLVIPLLIQIAKSMNVHPLLLMIPGAVGAQFAFLLPTGTPSNTVGFTTGHIEIKDMIKVGLPLKIAGTAVLTLLMPTLGTYVFGTNE 528
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2JZ46 ((Uncharacterized protein {ECO:0000313|EMBL:VFU21049.1}))

HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 306/389 (78.66%), Postives = 344/389 (88.43%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDSK 389
            MQIT+LF G+PLNP +LLLGIC TTAF+SMWMHN A A++MMPVATGIL R PTGP    V  KFCKAVVLGVIYSA IGG+STLTGTGVNLILVGMWKSYFPEA+PI+F+T+  FGFPLAL IFFA+W ILCL +  KGSG  LS YLDK+HLK EL+MLGPMAFAEKMIL IF  LI LWMTRSITDDIPGWGALFNG AGDGTVSVMMATLLFIIPNKKQ GEKLMDWNKCKKLPW IVLLLGAG A+A+GV++SGL  VLSKALDFLE+VPYLA+AP VCLI AT+TEF TSNN+TTTLV+PLLI+IAKTMHVHPLLLM+PG+IGAQ +FLLPTGTPSN++GFTTGHI++KDM+K G+PLK  GI  LS++MPTLGA+VFGTD +
Sbjct:  164 MQITMLFCGDPLNPPLLLLGICATTAFVSMWMHNVAAAVIMMPVATGILHRLPTGPTQSDVAGKFCKAVVLGVIYSAAIGGMSTLTGTGVNLILVGMWKSYFPEANPISFNTWFFFGFPLALVIFFALWAILCLLYCSKGSGQVLSAYLDKAHLKSELEMLGPMAFAEKMILAIFGTLIVLWMTRSITDDIPGWGALFNGLAGDGTVSVMMATLLFIIPNKKQRGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVKSSGLAEVLSKALDFLEEVPYLAIAPLVCLISATITEF-TSNNSTTTLVVPLLIQIAKTMHVHPLLLMIPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIKDMIKIGVPLKIVGIAALSLLMPTLGAYVFGTDGE 551
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5IEB3 ((Tonoplast dicarboxylate transporter-like {ECO:0000313|EMBL:KAB2637597.1}))

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 295/388 (76.03%), Postives = 348/388 (89.69%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTDS 388
            + IT+LF G+PL+P +LLLGIC TTAF+SMWMHN A A++MMPVATGILQRFP GP   V  +KFC+AVVLGVIYSA IGG+STLTGTGVNLILVGMWKSYFPEA PI+FST+   GFPLAL IF A+W+ILC  + P+ S   LS YLDK+ LKREL+MLGPMAFAEK++L++FS+LI LWMTRSITDDIPGWG+LFNGRAGDGTVSVMMATLLFIIPNKKQ GEKLMDWNKCKKLPW I+LLLGAG A+A+GV+TSGL ++LSKALDF+E VPY+A+APAVCLI +T+TEF TSNNATTTLV+PLLI+IAK+MHVHPLLLM+PG+IGAQ +FLLPTGTPSN++GFTTGHI+++DM+KTG+PLK AG VVLS++MPTLGA+VFGT+ 
Sbjct:  140 LNITMLFCGDPLSPPLLLLGICATTAFVSMWMHNVAAAMIMMPVATGILQRFPVGPDQSVAVSKFCRAVVLGVIYSAAIGGMSTLTGTGVNLILVGMWKSYFPEAKPISFSTWFFLGFPLALLIFLALWVILCCLYCPRNSSQALSAYLDKADLKRELEMLGPMAFAEKVVLSVFSMLIVLWMTRSITDDIPGWGSLFNGRAGDGTVSVMMATLLFIIPNKKQEGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADILSKALDFMEAVPYIAIAPAVCLISSTITEF-TSNNATTTLVVPLLIQIAKSMHVHPLLLMIPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGTVVLSLLMPTLGAYVFGTNE 526
[Close]
BLAST of XM_017371026.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UFY3 ((Uncharacterized protein {ECO:0000313|EMBL:ESR63115.1}))

HSP 1 Score: 608.601 bits (1568), Expect = 0.000e+0
Identity = 293/387 (75.71%), Postives = 339/387 (87.60%), Query Frame = 0
 
Query:    1 MQITVLFSGEPLNPQILLLGICGTTAFISMWMHNTAVALMMMPVATGILQRFPTGPRSDVVTTKFCKAVVLGVIYSATIGGISTLTGTGVNLILVGMWKSYFPEADPITFSTYILFGFPLALFIFFAMWIILCLWFVPKGSGPTLSTYLDKSHLKRELDMLGPMAFAEKMILTIFSILIFLWMTRSITDDIPGWGALFNGRAGDGTVSVMMATLLFIIPNKKQPGEKLMDWNKCKKLPWGIVLLLGAGLALAEGVQTSGLTNVLSKALDFLEQVPYLAMAPAVCLICATLTEFITSNNATTTLVLPLLIEIAKTMHVHPLLLMLPGSIGAQLAFLLPTGTPSNVIGFTTGHIDLKDMLKTGIPLKFAGIVVLSVVMPTLGAFVFGTD 387
            + IT+LF GEP+NP +LLLGICGTTAF+SMWMHN A A+MMMPVATGILQ  P       +  K+CKAVVLGVIYSA +GG+STLTGTGVNLILVGMWK+YFPEA+PI+FST+  FGFPLAL IF A+W ILCL++  +GSGP LS YLDK++LKRELDMLGPMAFAEKM+L +F +LI LWMTRSITDDIPGWGALFN RAGDGT SV+MATLLFIIP+ KQ GEKLMDWNKCKKLPW I+LLLGAG A+A+GV+TSGL + LSKALDFLE  PYLA+AP VCLI A +TEF TSNNATTTLV+PLLI+IAKTMHVHPLLLM+PG+IGAQ AFLLPTGTPSN++GFTTGHI+++DM+KTG+PLK AGI  L+ +MPTLGA+VFGTD
Sbjct:  173 LNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVMMMPVATGILQNLPEVHLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 558
Match NameStatsDescription
A0A6P3ZJB5E-Value: 0.000e+0, PID: 76.03(tonoplast dicarboxylate transporter {ECO:0000313|... [more]
A0A498JVJ6E-Value: 0.000e+0, PID: 77.06(Uncharacterized protein {ECO:0000313|EMBL:RXH9947... [more]
A0A540K7Y2E-Value: 0.000e+0, PID: 77.06(Uncharacterized protein {ECO:0000313|EMBL:TQD7000... [more]
A0A067K9K7E-Value: 0.000e+0, PID: 75.96(Uncharacterized protein {ECO:0000313|EMBL:KDP3291... [more]
A0A2P5CCL1E-Value: 0.000e+0, PID: 74.04(Sodium/sulfate symporter {ECO:0000313|EMBL:PON587... [more]
A0A2U1PDP4E-Value: 4.502e-37, PID: 76.18(Sodium/sulfate symporter {ECO:0000313|EMBL:PWA838... [more]
A0A2P6Q277E-Value: 0.000e+0, PID: 76.29(Putative sodium/sulfate symporter {ECO:0000313|EM... [more]
A0A6N2JZ46E-Value: 0.000e+0, PID: 78.66(Uncharacterized protein {ECO:0000313|EMBL:VFU2104... [more]
A0A5N5IEB3E-Value: 0.000e+0, PID: 76.03(Tonoplast dicarboxylate transporter-like {ECO:000... [more]
V4UFY3E-Value: 0.000e+0, PID: 75.71(Uncharacterized protein {ECO:0000313|EMBL:ESR6311... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.