XM_017371762.1

Resource Type: 
Polypeptide
Name: 
XM_017371762.1
Identifier: 
XM_017371762.1-protein
Sequence: 
MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFG
FVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSP
SPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPR
GFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGG
PNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIGS
GYGIGPNLEPGFGSNFEGAGQLSNISYGRGPNPMQNGSPNRFSSAVGYGV
GSSGYGISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIE
AIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVA
PTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELR
NAVSDVTPRDAVHYAEGYSVNNRSTRGMAA
Sequence Length: 
480
Sequence Checksum: 
6ed02f098f7b78b9aeb8c29eedbf3c77
View location in JBrowse: 
DCARv2_Chr9:30456743..30461499+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017371762.1, derives from mRNA, XM_017371762.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B3J3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537289.1}))

HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0
Identity = 312/481 (64.86%), Postives = 363/481 (75.47%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEP-GFGSNFEGAGQLSNISYGRGPNPMQNGSPNRFSSAVGYGVGSSGYG--ISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNRSTRG 477
            + ME GKLFIGGISWDTNED L++YFQ FGEVVEAVIMKDR TGRARGFGFVVFAD  VAERVV  KHMIDGR+VEAKKAVPRDDQ   +R +GSIQGSP PART   KKIFVGGLASTVTE++FKKYFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSEE V++VLL+TFHELNGKMVEVKRAVPKELSPG  ++ LGG N G++RVS  L+AYTQ +N S +G YG+R+DGRFSPV+VGRS +PP   SGYG+G N +P    S        SN+SYGRG NP  +GS NR+ S +GYG  S G G  +SS SR+  GNGS+ Y  S  NS  F G+G GNTGL+ A G+I AIWGS P+S Q GG  SA +S G++++ ++D+S   G  GYARN+ S+ APTSS YA +    +G  GNF G G FYGDP WR SSPEL+G G F   L N+ SDV PR+   Y  GYSV NRS RG
Sbjct:   10 LEMEPGKLFIGGISWDTNEDRLRDYFQVFGEVVEAVIMKDRTTGRARGFGFVVFADPVVAERVVMEKHMIDGRSVEAKKAVPRDDQHIMSRNNGSIQGSPGPART---KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEPVEKVLLKTFHELNGKMVEVKRAVPKELSPGPTRSLLGGYNSGLNRVSSFLNAYTQGYNPSSVGGYGVRMDGRFSPVTVGRSGFPPFSPSGYGMGLNFDPGSSSSYGGSGNFSSNLSYGRGLNPFYSGSSNRYISPIGYGGDSGGTGSVLSSTSRSMWGNGSLNYTTSSANSSDFMGSGSGNTGLVGALGSIGAIWGSSPMSGQVGGTDSAYTS-GNISYGTSDNSFGSGGGGYARNSGSSAAPTSS-YAPSNDGLDGALGNFHGSGSFYGDPTWRISSPELEGSGSFGYGLGNSASDVIPRNPAGYVGGYSVTNRSNRG 485
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LDZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9452748.1}) (Fragment))

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 297/481 (61.75%), Postives = 355/481 (73.80%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEPGFGSNFEGAGQLS-NISYGRGPNPMQNGSPNRFSSAVGYGVGSS--GYGISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNRSTRG 477
            M ME GK+FIGGISWDT+ED L+EYF+ +G+V+EAVIMKDR TGRARGFGFVVFAD AVAERVV+ KH+IDGRTVEAKKAVPRDDQ    + +GS+QGSP P+RT   KKIFVGGLASTVTE++FK YFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSE++VD+VL +TFHELNGKMVEVKRAVPKELSPG  +NQLGG + G+SRVS  L+AYTQ  + + +G YG+RLDGRFSPVSVGRS Y P   SGYG+ PN EP     + G G  S  I YGRG NP  N SPNR+ S VGYG G S  G G++S  RN   NG++ YA S +NS    G+G G+TGL  AFG+I  IWGS  IS Q GG  S  SS GS+++ + D+S   G  GY RN  ++VAPT    AA++ + +G FGNF G    +GDP+WRSSSP L+G G F   L    SD+T R++  Y  GY+V NR+  G
Sbjct:    1 MQMEPGKVFIGGISWDTDEDRLREYFRNYGDVIEAVIMKDRNTGRARGFGFVVFADPAVAERVVREKHIIDGRTVEAKKAVPRDDQNVVNKNNGSLQGSPGPSRT---KKIFVGGLASTVTESDFKNYFDQFGMITDVVVMYDHNTQRPRGFGFITYDSEDSVDKVLFKTFHELNGKMVEVKRAVPKELSPGPSRNQLGGYSNGLSRVSSFLNAYTQGNSPNSVGGYGVRLDGRFSPVSVGRSGYSPFRPSGYGMEPNFEPVLSPRYGGNGNSSPQIGYGRGWNPFYNSSPNRYDSPVGYGGGISVTGSGLTSAPRNIWANGNLNYA-SNSNSNDLMGSGSGSTGLAGAFGSIGTIWGSSNISGQRGGTDSLYSS-GSISYSNTDNSFGSGVGGYGRNNGNSVAPTLWNGAASSDNLDGPFGNFYGDDSLFGDPSWRSSSPGLEGSGTFGYGLGKVASDITARNSAGYVGGYTVANRANGG 476
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7IKK4 ((Uncharacterized protein {ECO:0000313|EMBL:TXG69741.1}))

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 292/477 (61.22%), Postives = 351/477 (73.58%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIGSGYGIGPNLEPGFGSNFEGAGQL-SNISYGRGPNPMQNGSPNRFSSAVGYG---VGSSGYGISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNR 473
            M ME GKLFIGGISWDTNED L+EYFQ FGEV+EAVIMKDR TGRARGFGF+VFAD AVAERVV  KHMIDGRTVEAKKAVPRDDQ   +R S SI GSP PART   KKIFVGGLASTVTE++FKKYFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSEEAVD+VLL+TFHELNGKMVEVKRAVPKELSPG  ++QLG  NYG++RVS  L+ YTQ +N   +  YG+R+DGR+SPV+VGRS + PIG GYG+G N EP    ++ G+  + SN+ YGR  NP   G+ NR+SS +GYG   VG+S   +SS SRN  GNG++ Y+ +  NS    G G G +G + +FG+I AIWG+ P S QGGG+ SA SS G+L++ + D  +  G +GY RN+ + V PTS   A+    +EG + +    G  YGD AWRSS  EL+G G F   L +A SDV  +++  Y  GY V NR
Sbjct:    6 MEMELGKLFIGGISWDTNEDRLREYFQAFGEVLEAVIMKDRTTGRARGFGFIVFADPAVAERVVLDKHMIDGRTVEAKKAVPRDDQNIQSRNSNSIHGSPGPART---KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPTRSQLGTYNYGLNRVSSFLNGYTQGYNPGSVAGYGVRIDGRYSPVTVGRSGFSPIGPGYGMGLNFEPNMSPSYGGSATISSNLGYGRALNPSYAGNSNRYSSPIGYGGSNVGNSSL-LSSPSRNLWGNGNLNYSTNSANSNSLLGLGSGTSG-MGSFGSIGAIWGTSPNSGQGGGVGSAYSS-GNLSYGTGDFGVGSGVLGYGRNSGTGV-PTS---ASNGGYDEG-YADIYENGSLYGDSAWRSSPSELEGPGSFGFGLGSAASDVMTKNSAGYVGGYGVANR 471
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834HDT2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7151248.1}))

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 293/481 (60.91%), Postives = 351/481 (72.97%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEPGFGSNFEGAGQLS-NISYGRGPNPMQNGSPNRFSSAVGYGVGSS--GYGISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNRSTRG 477
            M ME GK+FIGGISWDT+ED L+EYF+T+G+V+EAVIMKDR TGRARGFGFVVFAD AVAERVV+ KH+IDGRTVEAKKAVPRDDQ    + +GS+QGSP P+RT   KKIFVGGLASTVTE++FK YFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSE++VD+VL +TFHELNGKMVEVKRAVPKELSPG  +NQLGG   G+SRV+  L+AYTQ  + + +G YG+RLDGRFSPVSVGRS Y P   S YG+  N EP     + G G  S  I YGRG NP  N SPNR+ S VGYG G S  G G++S  RN   NG++ YA S +NS    G+G G+TGL  AFG+I  IWGS  IS Q GG  S  SSGG +++ + D+S   G  GY RN  ++VAPT     A++ + +G F NF G    +GDP+WRSSSP L+G G F   L    SD+T R++  Y  GY+V NR+  G
Sbjct:    1 MQMEPGKVFIGGISWDTDEDRLREYFRTYGDVIEAVIMKDRNTGRARGFGFVVFADPAVAERVVREKHIIDGRTVEAKKAVPRDDQNVVNKNNGSLQGSPGPSRT---KKIFVGGLASTVTESDFKNYFDQFGMITDVVVMYDHNTQRPRGFGFITYDSEDSVDKVLFKTFHELNGKMVEVKRAVPKELSPGPSRNQLGGYGNGLSRVNSFLNAYTQGNSPNSVGGYGVRLDGRFSPVSVGRSGYSPFRPSAYGMETNFEPVLSPRYGGNGNSSPQIGYGRGWNPFYNSSPNRYDSPVGYGGGISVTGSGLTSAPRNIWANGNLNYA-SNSNSNDLMGSGSGSTGLAGAFGSIGTIWGSSNISGQRGGTDSLYSSGG-ISYSNTDNSFGSGVGGYGRNNGNSVAPTLWNGTASSDNLDGPFRNFYGDDSLFGDPSWRSSSPGLEGSGTFGYGLGKVASDITARNSAGYVGGYTVANRANGG 476
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CC30 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78759.1}))

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 309/484 (63.84%), Postives = 348/484 (71.90%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEP-GFGSNFEGAGQLSNISYGRGPNPMQNGSPNRF--SSAVGYGVGSSGYGISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNRSTRGMAA 480
            M ME GKLFIGGISWDTNE+ L+EYFQTFGEVVEAVIMKDR TGRARGFGFVVFAD  VAERVV  KHMIDGR+VEAKKA PRDDQ    R +GSIQGSP PART   KKIFVGGLASTVTE++FKKYFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSEEAV++VLL+TFHELNGKMVEVKRAVPKELSPG  ++ LGG NYG+SRVS  L+AYTQ +                  V+VGRS YPP   SGYG+G N EP    S        SN  YGRG NP  +GS NR+      G G G +G  +SS SRN  GNGS+ YA +  NS  F G+G GNTGL+ AFG+I AIWGS PIS QGG   SA SS G++++ S+D+S   G  GYARN  S+  PTSS YAA     +G  GNF  GG FYGD  WRSSSPEL+G G F+  L NA SDV P++   Y  GYSV NRS RG+AA
Sbjct:    9 MEMEPGKLFIGGISWDTNEERLREYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPVVAERVVMEKHMIDGRSVEAKKAFPRDDQHFLNRNNGSIQGSPGPART---KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSLLGGYNYGLSRVSSFLNAYTQGYX-----------------VTVGRSGYPPFSPSGYGMGLNFEPGSSSSYGGSGNFSSNFGYGRGLNPFYSGSSNRYISPIGYGGGSGGTGSVLSSSSRNMWGNGSLNYATNSANSNDFMGSGSGNTGLVGAFGSIGAIWGSSPISGQGGVTDSAYSS-GNISYGSSDNSFLSGGGGYARNNGSSALPTSS-YAAPNDGLDGALGNFYRGGSFYGDLTWRSSSPELEGSGSFSYGLGNAASDVIPKNPAGYVGGYSVTNRSDRGIAA 470
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QLZ2 ((Heterogeneous nuclear ribonucleoprotein like {ECO:0000313|EMBL:PSS10422.1}))

HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 292/483 (60.46%), Postives = 350/483 (72.46%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEPGFGSNFEGAGQLSNISYGRGPNPMQNGSPNRFSSAV--GYGVGSSGYGISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNRSTRGMAA 480
            M ME GKLFIGGISWDTNED L+EYFQ FG VVEAVIMKDR TGRARGFGFVVFAD AVAERVV+ KH++DGRTVEAKKAVPRDDQ   +R SGS+QGSP PA T   KKIFVGGLASTVTE++FK YFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSEEAV++VLL+TFHELNGK+VEVKRAVPKELSPGS +N +GG  YG+SRVS LL+AYTQ +N S  G YG R+DGRFS V+VGRS YPP   +GYG+G N EPG   ++ G    SNI YGRG NP  +G+PNR++++V  G G  ++G  + S S++  GNG++ YA SP NS    G+G G TGL  A G+I +IWGS        G   +  + G++N+ + D++   G  GY RN+ S+ AP SS    A    +G FGNF GG  FY D  W SSSPE++G   F   L    SDV  +++  Y   YSV NR+ RG+AA
Sbjct:    1 MEMEPGKLFIGGISWDTNEDRLREYFQNFGAVVEAVIMKDRKTGRARGFGFVVFADPAVAERVVREKHILDGRTVEAKKAVPRDDQHVLSRNSGSLQGSPGPACT---KKIFVGGLASTVTESDFKMYFDQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKLVEVKRAVPKELSPGSSRNLVGGYTYGLSRVSSLLNAYTQGYNPSSFGGYGGRVDGRFSSVTVGRSGYPPFSPTGYGMGLNFEPGLSPSYNGNFS-SNIGYGRGLNPFYSGNPNRYNNSVGYGGGGNATGSTLGSTSQSMWGNGTLNYASSPANSNDLMGSGSGRTGLGGALGSIGSIWGSMSGGQG--GGTDSTYNTGNINYGNVDNTFGSGVRGYGRNSGSSAAPMSSY---AGDGLDGSFGNFYGGVSFYEDRTWHSSSPEVEGPDSFGYGLEKVASDVKVQNSAGYVGSYSVTNRANRGIAA 474
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EFL9 ((Uncharacterized protein {ECO:0000313|EMBL:THG15210.1}))

HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 304/484 (62.81%), Postives = 359/484 (74.17%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGG-PNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEPGFGSNFEGAGQL-SNISYGRGPNPMQNGSPNRFSS---AVGYGVGSSGYGISSISRNTLGNGSVTY-AKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNRSTRG 477
            M ME GKLFIGGISWDTNED L+EYFQTFGEVVEAVIMKDR TGRARGFGFVVFAD +VAERVV+ KH+IDGRTVEAKKAVPRDDQ   +R + S+QGSPSP   ARTKKIFVGGLASTVTE++FK+YFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSE+AV++VLL+TFHELNGKMVEVKRAVPKELSPG  +N LGG  NYG+SRV+ LL+AYTQ +N S +G YG    GRFSPV+VGRS YP  G SGYG+G N EPG   ++ G G   SNI YGRG NP  NGSPNR+++     G+G G SG  ++S SRN  GNGS+ Y + S  ++  F G+G GNTGL+ AFG+I  IWGS  IS QGG   S  +S G++++ + D+S  LG  GY RN+ +  APT S     + S +  FGN  GG  FYG+  WRSSSPEL+  G F        SDVT +++  Y   YSV NR+ RG
Sbjct:   62 MEMEPGKLFIGGISWDTNEDRLREYFQTFGEVVEAVIMKDRNTGRARGFGFVVFADPSVAERVVREKHIIDGRTVEAKKAVPRDDQHMLSRNNSSLQGSPSP---ARTKKIFVGGLASTVTESDFKEYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPTRNMLGGYNNYGLSRVNSLLNAYTQGYNPSSVGGYG----GRFSPVTVGRSGYPTFGPSGYGMGLNFEPGLSPSYGGNGNFSSNIGYGRGLNPFYNGSPNRYNNNPVGYGWGSGGSGSVLNSTSRNMWGNGSLNYASNSANSNNSFMGSGSGNTGLVGAFGSIGEIWGS-NISGQGGPTDSTFNS-GNVSYGNMDNSFGLGVGGYGRNSGNTAAPTPSY---GSDSLDEPFGNIYGGDSFYGNSTWRSSSPELE--GSFGYGFGKVASDVTAKNSAGYVGDYSVTNRANRG 531
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HHL2 ((Uncharacterized protein {ECO:0000313|EMBL:CCB51708.1}))

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 294/484 (60.74%), Postives = 347/484 (71.69%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIGSGYGIGPNLEPGFGSNFEGAGQL-SNISYGRGPNPMQNGSPNRFSSAVGYGVGSSGYG--ISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNR-STRGMAA 480
            M  + GKLFIGGISWDTNED LK+YF  +GEVVEAVIMKDR TGRARGFGFVVFAD AVAERV+K KH IDGR VEAKKAVP+DDQ   +R SGSI GSP P RT   +KIFVGGLASTVTE++FKKYFDQFG ITDVVVMYDHNTQRPRGFGFIT++SEEAVD+VLL+TFHELNGKMVEVKRAVPKELSPG I++QLGG NYG+SRV+  LSAY Q +  S +G YG+R+DGRFSP++ GRS +PP GSGYG+G N EPG   ++ G+    +N++YGRG NP   G+ NRF+S +GY  G+ G     SS +RN  GNG + +  +   S  FT      T    AFGN    WGS  IS QGGG ++  S+ G+L +   DSS  LG  GY RN+ ++VAPTSS YAA+ S  +G    F  GG  YGD  WR S+ E DG G F   L NA SDV  + +  Y  GYSV  R S RG+AA
Sbjct:    1 MQSDLGKLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEKHNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRT---RKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPIRSQLGGFNYGLSRVNSFLSAYNQGYAPSTVGGYGVRMDGRFSPIAGGRSGFPPFGSGYGMGMNFEPGLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYDGGNGGNSSFFSSATRNLWGNGGLNFGTNSATSSAFT-GSASGTTGGGAFGNSGTSWGSSLISAQGGG-SNISSNSGNLGYGGGDSSYGLGVGGYGRNSGTSVAPTSS-YAASNSGYDGALAEFYSGGSVYGDSTWRPSNAERDGSGSFGYGLGNAASDVPAKSSPGYVGGYSVTKRQSNRGIAA 478
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZZG7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8414218.1}))

HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 294/485 (60.62%), Postives = 345/485 (71.13%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIG-SGYGIGPNLEPGFGSNFEGAGQL-SNISYGRGPNPMQNGSPNRFSSAVGYGVGSSGYG--ISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNR-STRGMAA 480
            M  + GKLFIGGISWDTN++SLK++F+ +GEVVEAVIMKDR TGRARGFGFVVFAD AVAERVV  KHMIDGRTVEAKKAVPRDDQ    R + SI GSP PART   KKIFVGGLASTVTE+EFK YFDQFG ITDVVVMYDHNTQRPRGFGFIT+DSEEAV++VLL+ FHELNGKMVEVKRAVPKELSPG  ++ LGG NYG+SRV+  LS YTQ +N S IG YG+R+DGRFSPVS GRS + P G  GYG+G N EPG    + G+    SN+SYGRG NP  +G+ NR+ S +GYG G+ G    + S +RN  GNG + YA +  +S  +             FGN    WGS PIS QGGG  S  +S G+L + S DSS  LG  GY RN+ + VAP SS Y A+    +G +G+F  GG  YGDP WRS++ ELD  G F     +A SDV  + +  Y  GYSV NR S RG+AA
Sbjct:    1 MESDLGKLFIGGISWDTNDESLKKHFEAYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVPRDDQHILNRNNSSIHGSPGPART---KKIFVGGLASTVTESEFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKIFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGMSRVNSFLSGYTQGYNPSSIGGYGVRMDGRFSPVSGGRSGFAPFGPHGYGMGVNFEPGLSPGYGGSANFSSNLSYGRGLNPYYSGNSNRYGSPIGYGAGNGGSNSVLRSTTRNPWGNGGLNYATNSASSSAYL-GSRSGIIGGGTFGNSGVNWGSSPISAQGGGNGSGYTS-GNLGYGSGDSSYGLGGGGYGRNSGTGVAPASS-YTASNGGYDGSYGDFYSGGSVYGDPTWRSATSELDASGSFGYGFGSAASDVATKSSAGYVGGYSVTNRQSNRGIAA 479
[Close]
BLAST of XM_017371762.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IEF8 ((Heterogeneous nuclear ribonucleoprotein 1 {ECO:0000313|EMBL:RVW95121.1}))

HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0
Identity = 292/481 (60.71%), Postives = 344/481 (71.52%), Query Frame = 0
 
Query:    1 MAMETGKLFIGGISWDTNEDSLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFADAAVAERVVKAKHMIDGRTVEAKKAVPRDDQQTPTRISGSIQGSPSPARTARTKKIFVGGLASTVTENEFKKYFDQFGCITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIKNQLGGPNYGVSRVSDLLSAYTQRFNQSPIGSYGLRLDGRFSPVSVGRSVYPPIGSGYGIGPNLEPGFGSNFEGAGQL-SNISYGRGPNPMQNGSPNRFSSAVGYGVGSSGYG--ISSISRNTLGNGSVTYAKSPTNSGPFTGTGVGNTGLLSAFGNIEAIWGSPPISVQGGGMASALSSGGSLNFDSADSSLELGPIGYARNTSSNVAPTSSMYAAAASSNEGDFGNFPGGGLFYGDPAWRSSSPELDGFGLFASELRNAVSDVTPRDAVHYAEGYSVNNR-STRG 477
            M  + GKLFIGGISWDTNED LK+YF  +GEVVEAVIMKDR TGRARGFGFVVFAD AVAERV+K KH IDGR VEAKKAVP+DDQ   +R SGSI GSP P RT   +KIFVGGLASTVTE++FKKYFDQFG ITDVVVMYDHNTQRPRGFGFIT++SEEAVD+VLL+TFHELNGKMVEVKRAVPKELSPG I++QLGG NYG+SRV+  LSAY Q +  S +G YG+R+DGRFSP++ GRS +PP GSGYG+G N EPG   ++ G+    +N++YGRG NP   G+ NRF+S +GY  G+ G     SS +RN  GNG + +  +   S  FT      T    AFGN    WGS  IS QGGG ++  S+ G+L +   DSS  LG  GY RN+ ++VAPTSS YAA+ S  +G    F  GG  YGD  WR S+ E DG G F   L NA SDV  + +  Y  GYSV  R S RG
Sbjct:    1 MQSDLGKLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEKHNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRT---RKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPIRSQLGGFNYGLSRVNSFLSAYNQGYAPSTVGGYGVRMDGRFSPIAGGRSGFPPFGSGYGMGMNFEPGLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYDGGNGGNSSFFSSATRNLWGNGGLNFGTNSATSSAFT-GSASGTTGGGAFGNSGTSWGSSLISAQGGG-SNISSNSGNLGYGGGDSSYGLGVGGYGRNSGTSVAPTSS-YAASNSGYDGALAEFYSGGSVYGDSTWRPSNAERDGSGSFGYGLGNAASDVPAKSSPGYVGGYSVTKRQSNRG 475
Match NameStatsDescription
A0A5J5B3J3E-Value: 0.000e+0, PID: 64.86(Uncharacterized protein {ECO:0000313|EMBL:KAA8537... [more]
A0A6A4LDZ5E-Value: 0.000e+0, PID: 61.75(Uncharacterized protein {ECO:0000313|EMBL:KAE9452... [more]
A0A5C7IKK4E-Value: 0.000e+0, PID: 61.22(Uncharacterized protein {ECO:0000313|EMBL:TXG6974... [more]
A0A834HDT2E-Value: 0.000e+0, PID: 60.91(Uncharacterized protein {ECO:0000313|EMBL:KAF7151... [more]
A0A5B7CC30E-Value: 0.000e+0, PID: 63.84(Uncharacterized protein {ECO:0000313|EMBL:MPA7875... [more]
A0A2R6QLZ2E-Value: 0.000e+0, PID: 60.46(Heterogeneous nuclear ribonucleoprotein like {ECO... [more]
A0A4S4EFL9E-Value: 0.000e+0, PID: 62.81(Uncharacterized protein {ECO:0000313|EMBL:THG1521... [more]
F6HHL2E-Value: 0.000e+0, PID: 60.74(Uncharacterized protein {ECO:0000313|EMBL:CCB5170... [more]
A0A834ZZG7E-Value: 0.000e+0, PID: 60.62(Uncharacterized protein {ECO:0000313|EMBL:KAF8414... [more]
A0A438IEF8E-Value: 0.000e+0, PID: 60.71(Heterogeneous nuclear ribonucleoprotein 1 {ECO:00... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.