Resource Type:
Polypeptide
Name:
XM_017368416.1
Identifier:
XM_017368416.1-protein
Sequence:
MDEEERGPKLSKRFTDNKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQ
RRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKA
VSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPSDL
PAAAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEI
RNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDAS
EPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPEL
LANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSK
KREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLK
HRHKQSRSRRHSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQS
RSKRHHPSNSELLNSGRKHRHKHSRSKRHYSSPETSDSIDESRQ
Sequence Length:
494
Sequence Checksum:
ffe6e6f5f9a2de00320dd44b22a384d8
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368416.1, derives from mRNA, XM_017368416.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4E5A7 ((uncharacterized zinc finger CCHC domain-containing protein At4g19190 {ECO:0000313|RefSeq:XP_018814584.1}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 293/483 (60.66%), Postives = 359/483 (74.33%), Query Frame = 0
Match: A0A2I4E5A7 ((uncharacterized zinc finger CCHC domain-containing protein At4g19190 {ECO:0000313|RefSeq:XP_018814584.1}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 293/483 (60.66%), Postives = 359/483 (74.33%), Query Frame = 0
Query: 3 EEERGPKLSKRFTD-NKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPSD-LPAAAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSKKREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSRRHSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSRSKRHHPSNSELLNS-------GRKHRHKHSRS 476
EE G +LSKRF+D DGEVDYKTK+GTAWSH++LNQKPWHPLSYPNQRRKWIAEQTHAQR+RRAEEVAREY+QEQEFFRQTAL+SKKEKEK+EMMKAVSFMY+RPPGY+ ESAKAAEIA+ +KKQE + DP ++ +S AMP + +P EEKKK R KD++GRALPTEE+F++LKNAPR++TG+ RA+PFG+E+RNVKCLRCGNYGHQSGDRECPLKD IMPNEESRLKRDDPL IL TD SEPLKWELKQKPG+SPPRGGF PDDPNQQIVAEDIFDEYGGFLS NIP LL NFS+ K++K +++ + + E++D E+++SS +DG ++SKK++ E++ +D E +RR +SR K Y SSE +D+D R K+ R ++S S SD RH +S + R SF S DSD H+ KR H ++ +S G K RHK+S S
Sbjct: 4 EEGEGLRLSKRFSDKGPDGEVDYKTKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQRERRAEEVAREYSQEQEFFRQTALISKKEKEKVEMMKAVSFMYVRPPGYNAESAKAAEIADESKKQELN----DPLADGESTAMPPESVPVRGEEKKKPRPKDVFGRALPTEEEFEVLKNAPRLETGVQGRAKPFGVEVRNVKCLRCGNYGHQSGDRECPLKDAIMPNEESRLKRDDPLNAILAHTDPSEPLKWELKQKPGVSPPRGGFKPDDPNQQIVAEDIFDEYGGFLSGDNIPALLTNFSTKPKKSRKKRKQKRQQSSPN---RELKDPNEDEISS-ADGLQRSKKKKRKMKERQHNDSESSSDGIE---FDRRRKSRHKHSY--SSEDSDADKNLRSKKGRD-KYSYSSGDSDLD-RHHRSDTCRQKRSFSSEDSDLDRHHRN--DKRRHKNSYSYEDSDLDKHLRGDKIRHKNSHS 469
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KS54 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 294/466 (63.09%), Postives = 345/466 (74.03%), Query Frame = 0
Match: A0A067KS54 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 294/466 (63.09%), Postives = 345/466 (74.03%), Query Frame = 0
Query: 3 EEERGPKLSKRFTDNKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPSD-LPA---AAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVIL-DRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGR-RKSKKREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSRRHSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSRSKRHHPSNSEL 462
EE G +LSKRF D+K+GEVDYKTK+GTAWSH++LNQKPWHPLSYPNQRRKWIAEQTHAQR RR+EEVAREYAQEQEFFRQTAL+SKKEKEK+EMMKAVSFMY+RPPGY+ ESAKAAEIA+ K++E D PSQ + A S+ MP + +P EEKKK R KD++GR +PTEE+F+ILKNAPR++TG+ AR +PFGIE+RNVKC+RCGNYGHQSGDRECPLKD IMPNEESRLKRDDPLT I+ D SEPLKWELKQKPGMSPPRGGF PDDPNQQIVAEDIFDEYGGFLS +IP+LL NFS +KSK K K KR +SP E R EE ++S SD R R+SKK + N K L++++ DS V+R + K RHK S S S ES SD +R K+SR +H + E SD DG H+ K+SR KRH S+ L
Sbjct: 4 EEGGGIRLSKRF-DDKNGEVDYKTKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQRQRRSEEVAREYAQEQEFFRQTALISKKEKEKIEMMKAVSFMYVRPPGYNAESAKAAEIADERKREEHDYPSQHQTAEASSSTMPPESVPGRDQLGEEKKKPRPKDVFGRPVPTEEEFEILKNAPRLETGVPARVKPFGIEVRNVKCIRCGNYGHQSGDRECPLKDAIMPNEESRLKRDDPLTAIMAANMDPSEPLKWELKQKPGMSPPRGGFHPDDPNQQIVAEDIFDEYGGFLS-SDIPDLLTNFSPTKSKKKSKKHKH--KRDSSPS-REFRTLEERGLASPSDNRERRSKKSKRN-----TKLSLFDSNLSNDSKVDRHSK------------------KSRHKPSYS---SDESGRSDRHYRSKKSR-QKHSNLSEDSDLDGHHRSKKSR-KRHQSSSEHL 436
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C7C5 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083} (Fragment))
HSP 1 Score: 521.161 bits (1341), Expect = 0.000e+0
Identity = 263/352 (74.72%), Postives = 301/352 (85.51%), Query Frame = 0
Match: A0A5B7C7C5 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083} (Fragment))
HSP 1 Score: 521.161 bits (1341), Expect = 0.000e+0
Identity = 263/352 (74.72%), Postives = 301/352 (85.51%), Query Frame = 0
Query: 1 MDEEERGP-KLSKRFTDNKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPSD-LPA---AAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEE-KVSSDSDGR 346
M+EEE G +LSKRF+D + GEVDYKTK+GTAWSH++LNQKPWHPLSYPNQRRKWIAEQTHAQ DRRA+EVAREYAQEQEFFRQ ALVSKKEKEKMEMMKAVSFMY+RPPGY+ ESAKAAEI + KKQE +NP QDP+++ S AM + +P + EEKKK R KD++GRALPTEEQF++LKNAPR++TG+ AR +PF +E+RNVKC+RCG YGHQSGDRECPLKD IMPNEESRLKRDDPLT IL RTD+SEPLKWELKQKPGMSPPRGGF DDPNQQIVAEDIFDEYGGFL E NIPELL NF SSK K K+S+SK KHKR +SP +++DR E+ SSD +GR
Sbjct: 19 MEEEEGGGIRLSKRFSD-EGGEVDYKTKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAQEVAREYAQEQEFFRQAALVSKKEKEKMEMMKAVSFMYVRPPGYNAESAKAAEIVDEMKKQEQNNPLQDPSTDGASTAMSLESMPGRDRSGEEKKKPRPKDVFGRALPTEEQFEVLKNAPRLETGVPARVKPFAVEVRNVKCIRCGTYGHQSGDRECPLKDAIMPNEESRLKRDDPLTSILARTDSSEPLKWELKQKPGMSPPRGGFKSDDPNQQIVAEDIFDEYGGFLGEGNIPELLTNF-SSKPKKKRSTSKNKHKRQSSPTSTKLKDRREDGSSSSDDEGR 368
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N6Q1 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 260/352 (73.86%), Postives = 294/352 (83.52%), Query Frame = 0
Match: A0A5N6N6Q1 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 260/352 (73.86%), Postives = 294/352 (83.52%), Query Frame = 0
Query: 1 MDEEERGPKLSKRFTD-NKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPAS-NADSAAMPSDLPAAAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSK 350
MD+EE GP+LSKRF++ DGEVDYKTKSGTAWSH++LNQKPWHPLSYPNQRRKWIAEQTHAQR+RRAEEVAREYAQEQ+FFRQ ALVSKKEKEKMEM+KAVSFMY+RPPGY+ ESAKAAEIAE K QE PS D S +A +A + + E KK R KD++GR LPTEEQF+ LKNAPR++TG+ RA+PFGIEIRNVKC+RCG +GHQSGDRECPLKDTIMPNEESRLKRDDPLT I+ +T++SEPLKWELKQKPGMSPPRGGF PDDPNQQIVAEDIFDEYGGFL E+ IP LLANFS+ K KK SSKRKHK SP I IRD ++ S D++ R KSK
Sbjct: 1 MDDEEGGPRLSKRFSNKTADGEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQRERRAEEVAREYAQEQDFFRQAALVSKKEKEKMEMLKAVSFMYVRPPGYNAESAKAAEIAEEKKAQE---PSLDQHSEDAGTAHILQNPMPPNERMKKPRPKDVFGRNLPTEEQFEALKNAPRLETGVAGRAKPFGIEIRNVKCVRCGTFGHQSGDRECPLKDTIMPNEESRLKRDDPLTTIIAQTESSEPLKWELKQKPGMSPPRGGFRPDDPNQQIVAEDIFDEYGGFLGEEAIPNLLANFST--RKQKKPSSKRKHK-AESPSI--IRDYQDILSSDDAEKRSKSK 344
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059CKD8 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 523.087 bits (1346), Expect = 1.542e-180
Identity = 282/451 (62.53%), Postives = 344/451 (76.27%), Query Frame = 0
Match: A0A059CKD8 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 523.087 bits (1346), Expect = 1.542e-180
Identity = 282/451 (62.53%), Postives = 344/451 (76.27%), Query Frame = 0
Query: 3 EEERGPKLSKRFTD----NKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPS---DLPAAAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSKKREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSR---SRRHSCESSSSDEKHRHKQSRSSR-HLSSFESSDSD 442
EE G +LSKRF+D GEVDYKTK+GTAWSH++LNQKPWHPLSYPNQRRKWIAEQ HA+RDRRA+EVAREYAQEQ+FFRQTAL+SKKEKEK+E+MKAVSFMY+RPPG++PESAKAAEI + K+Q NP+QD + S++MP D PA EEKKK R KD++GR LPTE +F+ILKNAPRM+TG AR +PFGIEIRNVKCLRCG +GHQSGDRECPLKD IMPNEESRLKRDDPLT IL TD +EPLKWELKQKPGMSPPRGGF+ DDPNQQIVAEDIFDEYGGFL NIP+LL NF +SK K +KSS +R+HKR +SP E D + SSD + ++ ++ K + K+K E+ ++S +++HR RS+ ++ SSE +D D HR K+S+ SR E+ D++HRH++SR +R H S+ S D D
Sbjct: 76 EEGEGLRLSKRFSDKAIAGGGGEVDYKTKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQLHAERDRRADEVAREYAQEQDFFRQTALISKKEKEKVEVMKAVSFMYVRPPGFNPESAKAAEIEDERKRQAQSNPNQDSVISGASSSMPPEQRDHPA--EEKKKPRPKDVFGRPLPTEAEFEILKNAPRMETGAPARVKPFGIEIRNVKCLRCGTFGHQSGDRECPLKDAIMPNEESRLKRDDPLTAILAHTDPTEPLKWELKQKPGMSPPRGGFNLDDPNQQIVAEDIFDEYGGFLGTNNIPDLLTNFPASKPKKQKSSKRRRHKRQSSPDSREDFDEDGSSSSSDY----EERRSKKEKKKHKKKHNHSESSSSDNSEADKKHRKRSRHKHQYSSEDSDIDRHHRGKRSKKKQSRSRDSENKEVDKRHRHERSRRARDHSPSYSSGDFD 520
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P8DEL7 ((uncharacterized zinc finger CCHC domain-containing protein At4g19190 {ECO:0000313|RefSeq:XP_031392924.1}))
HSP 1 Score: 520.39 bits (1339), Expect = 1.290e-179
Identity = 290/489 (59.30%), Postives = 361/489 (73.82%), Query Frame = 0
Match: A0A6P8DEL7 ((uncharacterized zinc finger CCHC domain-containing protein At4g19190 {ECO:0000313|RefSeq:XP_031392924.1}))
HSP 1 Score: 520.39 bits (1339), Expect = 1.290e-179
Identity = 290/489 (59.30%), Postives = 361/489 (73.82%), Query Frame = 0
Query: 1 MDEEE-RGPKLSKRFTD-NKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQD-PASNADSAAMPSDLPAAAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQ--NIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSKKREEN-----KAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSRR-HSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSR--SKRHHPSNSELLNSGRKHRHKHSRS 476
MD EE G +LSKRF+D N GEVDYKTKSGTAWSH++LNQKPWHPLSYPNQRRKWIAEQ HAQRDRRAEE+AREYAQEQEFFRQ+ALVSKKEKEK+EMMKAVSFMY+RPPGY+PESA+AAEIA+ KKQE NPSQ+ P+S+ ++ ++ PA E KKK R KD++GR LPTEE+F+ILKNAPR+DTG+ ARA+PFG+E+RNVKC+RCGNYGHQSGDRECPLKD IMPNEESR+KRDDPL IL + D SEPLKWELKQ+PGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFL + NIP+LL NFS+SK K +KSS K KH R TSP R + +++ R + + KA ++K + + EDS R H ++ KR+ ++S S++ + + ++ +S++ H SS D RH ++R +R ++ + D +H +S+ KRH S+S + R+H H H RS
Sbjct: 1 MDGEEGEGLRLSKRFSDKNGSGEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQLHAQRDRRAEEIAREYAQEQEFFRQSALVSKKEKEKVEMMKAVSFMYVRPPGYNPESARAAEIADERKKQEQGNPSQNEPSSSKAPESITANQPA--EVKKKPRPKDVFGRPLPTEEEFEILKNAPRLDTGIAARAKPFGVEVRNVKCVRCGNYGHQSGDRECPLKDVIMPNEESRIKRDDPLNAILAQQDPSEPLKWELKQRPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLGGESINIPDLLTNFSASKPKKRKSSKKSKH-RETSPPSENERRKSDKQDKKHHKKRWSDSESASSEDSVPKARHREKSRGRRSHSSEDSDPGRHHGAQRKRKTNANSSSSEDEDESNNRSKKSKKMHYFSESSEDGTDRHDRTRRNRKTDAYLEKEYDSYERHSRSKKNKKRHSYSSSSEDDIDRQHIHGHRRS 486
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9U394 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 516.924 bits (1330), Expect = 3.368e-178
Identity = 283/482 (58.71%), Postives = 349/482 (72.41%), Query Frame = 0
HSP 2 Score: 37.3502 bits (85), Expect = 7.329e+0
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 0
Match: A0A2C9U394 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 516.924 bits (1330), Expect = 3.368e-178
Identity = 283/482 (58.71%), Postives = 349/482 (72.41%), Query Frame = 0
Query: 3 EEERGPKLSKRFTDNKDG-EVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDP-ASNADSAAMPSDLPA---AAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSKKREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSRR-HSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSRSKRHHPSNSELLNSGRKHRHKHSRSKR 478
EE G +LSKRF DNK+G EVDYKTK+GTAWSH++LNQKPWHPLSYPNQRRKWIAEQTHAQR RRAEEV+REYAQEQEFFRQTAL+SKKEKEK+EMMKAVSFMY+RPPGY+ ESAKAAEIA+ K+ E +N Q P A A S +P +P+ EEKKK R KD++GR +PTEE+F++LKNAPR++TG+ AR +PFGIE+RNVKCLRCGNYGHQSGDRECPLKD IMPNEESRLKRDDPLT I+ + D +EPLKWELKQKPGMSPPRGGF+PDDPNQQIVAEDIFDEYGGFL +IP+LL NFS KS+ K K K S R+ SSD + RR K + + K + + + DS +S+ Y +SSE++D D ++ K+SR + +S E D RH++S+ SRH S+ S D G +H+ ++++ H + SE ++ HR K+SR K+
Sbjct: 4 EEGGGIRLSKRFNDNKNGSEVDYKTKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQRQRRAEEVSREYAQEQEFFRQTALISKKEKEKIEMMKAVSFMYVRPPGYNAESAKAAEIADERKRDEEENTFQHPPAEGASSTMLPESIPSRDHLGEEKKKPRPKDVFGRPVPTEEEFEVLKNAPRLETGVAARVKPFGIEVRNVKCLRCGNYGHQSGDRECPLKDAIMPNEESRLKRDDPLTAIMAQMDPTEPLKWELKQKPGMSPPRGGFNPDDPNQQIVAEDIFDEYGGFLG-GDIPQLLTNFSPKKSRKKSKRHKHKRDSSPSREFRAPRESGLSSPSSDQE-RRSKKSKMKKKLNHSESSPFDDLNFDGDS-------KKSRHIYYNSSENSDGDRQNWSKRSRYKHYYSSEEYGGD---RHQKSKKSRHKHSYSSEDP-GSDRHRSKKNRQKHSNLSEESDADGHHRSKNSRMKQ 472
HSP 2 Score: 37.3502 bits (85), Expect = 7.329e+0
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 372 EDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSR-RHSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSRSKRHH 456
ED G +R ++++++ + SE +D+D HR K SR + R S E S D H+ ++ + + S++ SDSD +H++S+ + HH
Sbjct: 434 EDPGSDRHRSKKNRQKHSNLSEESDADGHHRSKNSRMKQRSSFEHSPVDRHHKREKKQKQSYQHSYDYSDSD---KHRKSKHRPHH 516
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6H8X3 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 511.531 bits (1316), Expect = 2.658e-176
Identity = 277/475 (58.32%), Postives = 344/475 (72.42%), Query Frame = 0
Match: A0A7J6H8X3 (Cir_N domain-containing protein {ECO:0000259|SMART:SM01083})
HSP 1 Score: 511.531 bits (1316), Expect = 2.658e-176
Identity = 277/475 (58.32%), Postives = 344/475 (72.42%), Query Frame = 0
Query: 3 EEERGPKLSKRFTDNKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPSD-LPAAAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSKKREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSRRHSCESSSSDEKHRHKQSRSSRH--LSSFESSDSDGKHQHKQSRSKRHHPSNSELLNSGRKHRHKHS 474
EE G +LSKRF K GEVDYKTKSGTAWSH++LNQKPWHPLSYPNQRRKWIAEQTHA +RRAEEVAREYAQEQEFFRQ A+VSKKE+EK+E+MKAVSFMY+RPPGY+ ESAKAAEIAE + +E +NP+ D AS A+MPS+ +PA AEEKKK+R KD++GR+LPT E+F+ILKNAPR++TG+ RA+PFG+EIRNVKC+RCG +GHQSGDRECPLKD IMPNE+SRLKRDDPLT IL D SEPLKWELKQKPG+SPPRGGF DDPNQQIVAEDIFDEYGGFLS IPELL NF + K K +++ SP++ E + E S D + R + KK +NK + K++R YE + + S + + + Y +S ES S +H H ++S+ S ++ + +RH +S SRH L+S E SD D H + +S + + S KH+H +S
Sbjct: 4 EEGEGIRLSKRFPSEKGGEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHANHERRAEEVAREYAQEQEFFRQAAMVSKKEQEKLEIMKAVSFMYVRPPGYNAESAKAAEIAEERRMEEQNNPNADEAS----ASMPSESIPAKAEEKKKRRPKDVFGRSLPTGEEFEILKNAPRLETGVAGRAKPFGVEIRNVKCVRCGTFGHQSGDRECPLKDVIMPNEQSRLKRDDPLTAILAHIDPSEPLKWELKQKPGISPPRGGFKLDDPNQQIVAEDIFDEYGGFLS-GGIPELLTNFPGKSKDKSRKKKKHK-RQILSPNVEESEENEFSSTSEDEERRSRKKKHAKNKKKSKKRRDHYETNTSDVSEYDAHNEKSNHMDYHASEESDGS--RHHHSSTKSKSRIKLSYANSDDYRHGRSDRSRHKKLTSKE-SDCDRHHYSRHKQSYDSSDDSDDQFRSKNKHKHSYS 469
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1CE74 ((uncharacterized zinc finger CCHC domain-containing protein At4g19190 {ECO:0000313|RefSeq:XP_022139946.1}))
HSP 1 Score: 512.686 bits (1319), Expect = 3.001e-176
Identity = 298/532 (56.02%), Postives = 357/532 (67.11%), Query Frame = 0
Match: A0A6J1CE74 ((uncharacterized zinc finger CCHC domain-containing protein At4g19190 {ECO:0000313|RefSeq:XP_022139946.1}))
HSP 1 Score: 512.686 bits (1319), Expect = 3.001e-176
Identity = 298/532 (56.02%), Postives = 357/532 (67.11%), Query Frame = 0
Query: 1 MDEEERGP-KLSKRFTD-NKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQDPASNADSAAMPSDLPAAAE----EKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQNIPELLANFSSSKSKNKKSSSKRKHKRLTSPH--IAEIRDRE--------------------EEKVSSDSDGRRKSKK---------REENKAEKKQKRK-LYEADKPEDSGVNRRHRSRSKRRY---PSSSESTDSDLKHRHKQSRSRR--HSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSRSKRHHPSNSEL------LNSGRKHRHKH----SRSKRH 479
MD EE G +LSKRF+D + GEVDYKTK+GTAWSH++LNQKPWHPLSYPNQRRKWIAEQTH+QR++RA+EVAREYAQEQEFFRQTALVSKKEKEK+EMMKAVSFMY+RPPGY+ ESAKAAEIA++ KKQ+ DNPS D + + P + A EKKK R KD++GRALPTEE+F++LKNAPRMDTG+ AR +PFG+E+RNVKC+RCG YGHQSGDRECPLKD IMPNEESRLKRDDPLT IL D SEPLKWELKQKPG+SPPRGGF+PDDPNQQIVAEDIFDEYGGFLS +PELL+NFSS K K S + K L+SP ++ D E E SD RR K E + KK +RK LY +D V+ R R RY PS+S+ ++S+ RH + R R+ +SC S +H RS+R S+ S DSD + + +S+ H S+ L LNS +HR H S +KRH
Sbjct: 1 MDGEEGGGIRLSKRFSDKSGSGEVDYKTKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHSQREKRADEVAREYAQEQEFFRQTALVSKKEKEKLEMMKAVSFMYVRPPGYNAESAKAAEIADDRKKQDGDNPSHDLPKDGSANERPPESSATVGRDPGEKKKPRPKDVFGRALPTEEEFEVLKNAPRMDTGVFARVKPFGVEVRNVKCVRCGIYGHQSGDRECPLKDAIMPNEESRLKRDDPLTTILAHADNSEPLKWELKQKPGISPPRGGFNPDDPNQQIVAEDIFDEYGGFLSGGIVPELLSNFSSKPKKKKSSKESSRKKFLSSPRRKAKDLEDNERTSKKKNKSKRKKQISSESSSETSESDRRDRRNKHKASYLSDDSNSEMHLRTKKHRRKHLYTSD------VSNFERHRISDRYCPEPSTSDISESE---RHDKGRKRKDSYSCRKLESGLEH-----RSARKNQSYSSEDSDFERHQRNGKSRSKHTSSRGLHSDSHHLNSKMRHRRSHSSDDSETKRH 518
BLAST of XM_017368416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218VXB5 (SWIB/MDM2 domain-containing protein {ECO:0000259|PROSITE:PS51925})
HSP 1 Score: 512.686 bits (1319), Expect = 5.411e-176
Identity = 285/464 (61.42%), Postives = 343/464 (73.92%), Query Frame = 0
Match: A0A218VXB5 (SWIB/MDM2 domain-containing protein {ECO:0000259|PROSITE:PS51925})
HSP 1 Score: 512.686 bits (1319), Expect = 5.411e-176
Identity = 285/464 (61.42%), Postives = 343/464 (73.92%), Query Frame = 0
Query: 1 MDEEE-RGPKLSKRFTD-NKDGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAEEVAREYAQEQEFFRQTALVSKKEKEKMEMMKAVSFMYIRPPGYDPESAKAAEIAENTKKQEADNPSQD-PASNADSAAM---PSDLPA--AAEEKKKKRVKDIYGRALPTEEQFDILKNAPRMDTGMIARARPFGIEIRNVKCLRCGNYGHQSGDRECPLKDTIMPNEESRLKRDDPLTVILDRTDASEPLKWELKQKPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLSEQ--NIPELLANFSSSKSKNKKSSSKRKHKRLTSPHIAEIRDREEEKVSSDSDGRRKSKKREENKAEKKQKRKLYEADKPEDSGVNRRHRSRSKRRYPSSSESTDSDLKHRHKQSRSRRHSCESSSSDEKHRHKQSRSSRHLSSFESSDSDGKHQHKQSRSKR 454
MD EE G +LSKRF+D N GEVDYKTKSGTAWSH++LNQKPWHPLSYPNQRRKWIAEQ HAQRDRRAEE+AREYAQEQEFFRQ+ALVSKKEKEK+EMMKAVSFMY+RPPGY+PESA+AAEIA+ KKQE NPSQ+ P+S+ S+ + P + A AE KKK R KD++GR LPTEE+F+ILKNAPR+DTG+ ARA PFG+E+RNVKC+RCGNYGHQSGDRECPLKD IMPNEESR+KRDDPL IL + D SEPLKWELKQ+PGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFL + NIP+LL NFS+SK K +KSS K KH+ + P E E+ SD ++ KKR + + + +A RHR +S+ R SSE +D +H Q + + ++ SSS DE + +S+ S+ + F S DG +H ++R R
Sbjct: 1 MDGEEGEGLRLSKRFSDKNGSGEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQLHAQRDRRAEEIAREYAQEQEFFRQSALVSKKEKEKVEMMKAVSFMYVRPPGYNPESARAAEIADERKKQEQGNPSQNEPSSSKKSSTIDRAPESITANQPAEVKKKPRPKDVFGRPLPTEEEFEILKNAPRLDTGIAARANPFGVEVRNVKCVRCGNYGHQSGDRECPLKDVIMPNEESRIKRDDPLNAILAQQDPSEPLKWELKQRPGMSPPRGGFDPDDPNQQIVAEDIFDEYGGFLGGESINIPDLLTNFSASKPKKRKSSKKSKHRETSPPS-------ENERRKSDKQDKKHHKKRWSDSESASSEDSVPKA----------RHREKSRGRRSHSSEDSDPG-RHHGAQRKRKTNANSSSSEDEDESNNRSKKSKKMHYFSESSEDGTDRHDRTRRNR 446
| Match Name | Stats | Description |
|---|---|---|
| A0A2I4E5A7 | E-Value: 0.000e+0, PID: 60.66 | (uncharacterized zinc finger CCHC domain-containin... [more] |
| A0A067KS54 | E-Value: 0.000e+0, PID: 63.09 | Cir_N domain-containing protein {ECO:0000259|SMART... [more] |
| A0A5B7C7C5 | E-Value: 0.000e+0, PID: 74.72 | Cir_N domain-containing protein {ECO:0000259|SMART... [more] |
| A0A5N6N6Q1 | E-Value: 0.000e+0, PID: 73.86 | Cir_N domain-containing protein {ECO:0000259|SMART... [more] |
| A0A059CKD8 | E-Value: 1.542e-180, PID: 62.53 | Cir_N domain-containing protein {ECO:0000259|SMART... [more] |
| A0A6P8DEL7 | E-Value: 1.290e-179, PID: 59.30 | (uncharacterized zinc finger CCHC domain-containin... [more] |
| A0A2C9U394 | E-Value: 3.368e-178, PID: 58.71 | Cir_N domain-containing protein {ECO:0000259|SMART... [more] |
| A0A7J6H8X3 | E-Value: 2.658e-176, PID: 58.32 | Cir_N domain-containing protein {ECO:0000259|SMART... [more] |
| A0A6J1CE74 | E-Value: 3.001e-176, PID: 56.02 | (uncharacterized zinc finger CCHC domain-containin... [more] |
| A0A218VXB5 | E-Value: 5.411e-176, PID: 61.42 | SWIB/MDM2 domain-containing protein {ECO:0000259|P... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |