Resource Type:
Polypeptide
Name:
XM_017371402.1
Identifier:
XM_017371402.1-protein
Sequence:
MLLNLRLPSLPCRAVVYSCLHSKMSATTGPVIRKFIPVEHSQTHGSKLRL
VSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEV
DEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDY
NDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPR
VRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLS
RLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQ
REDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLD
LPEADSSDVKGGLPNYYHPSDHLPIGADFVIRTK
Sequence Length:
384
Sequence Checksum:
6cd885963ad16cc4a539ed9a785a216f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371402.1, derives from mRNA, XM_017371402.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C3M4 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372} (Fragment))
HSP 1 Score: 513.457 bits (1321), Expect = 1.006e-180
Identity = 251/385 (65.19%), Postives = 294/385 (76.36%), Query Frame = 0
Match: A0A5B7C3M4 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372} (Fragment))
HSP 1 Score: 513.457 bits (1321), Expect = 1.006e-180
Identity = 251/385 (65.19%), Postives = 294/385 (76.36%), Query Frame = 0
Query: 4 NLRLPSLPCRAVVYSCLH-SKMSATTGPVIRKFIPVEHSQTH------GSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 381
+L LP LP + S + KMS T P+ KFIPVE S+ G K LVSYNILAQ YVKS+LFPHSP+PCLKWKAR Q +LTVL+S AD LCLQE+DEYD+FYKGN+ESHGYSS+YIQRSG K DGCGIFY++ ELV++EKI+YNDLVNS Q+ LC D ++ +D + L K T GDPNDP RLKRDCVGIM AF+LK+ S+H +IVANTH+YWDP+WADVKLAQ KYLLS LA+FKTLVSDK PSV+++GDFNS PGDKVY+YLISG+ +M P LE EDLPIPL SVYA RGEPQFTN TPGFTGTLDYI FS SG I P+SYL+LPE +SSD+ GGLPNY+HPSDHLPIGA+F +
Sbjct: 4 SLLLPRLPLVSSFRSRISLGKMSTTAAPLCPKFIPVEQSEISSTSRPDGFKFSLVSYNILAQVYVKSALFPHSPSPCLKWKARSQAILTVLKSLGADFLCLQELDEYDSFYKGNMESHGYSSIYIQRSGQKHDGCGIFYKHKSAELVLEEKIEYNDLVNSNQDGTTLCVDKDNDALASGNKDAEPNDGLVEKKT--HGDPNDPSFRLKRDCVGIMGAFKLKDPSQHLIIVANTHLYWDPEWADVKLAQAKYLLSCLAQFKTLVSDKLGCTPSVIVAGDFNSTPGDKVYQYLISGSSTMGPPLECSEDLPIPLQSVYASTRGEPQFTNVTPGFTGTLDYIFFSSSGDIKPVSYLELPEPESSDINGGLPNYHHPSDHLPIGAEFEV 386
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TM96 ((carbon catabolite repressor protein 4 homolog 4-like isoform X1 {ECO:0000313|RefSeq:XP_011082141.1}))
HSP 1 Score: 513.072 bits (1320), Expect = 1.127e-180
Identity = 246/365 (67.40%), Postives = 292/365 (80.00%), Query Frame = 0
Match: A0A6I9TM96 ((carbon catabolite repressor protein 4 homolog 4-like isoform X1 {ECO:0000313|RefSeq:XP_011082141.1}))
HSP 1 Score: 513.072 bits (1320), Expect = 1.127e-180
Identity = 246/365 (67.40%), Postives = 292/365 (80.00%), Query Frame = 0
Query: 22 SKMSATTGPVIRKFIPVEHSQT------HGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADF 379
SKMS T GP+ RKF+PVE S+ K RLVSYNILAQAYVKS+ FPHSPAPCLKWKAR Q +LT+L+S EAD LCLQEVDEYDTFYK N+E+ GY+S+YIQRSG KRDGCGIFY N ELV++E+IDYNDLV+++++ + VS + + + L KD++ DRGDPNDPRVRLKRDCVGIM AFRL+ S H VI+ANTH+YWDP+WADVK+AQ KYLLSRLA FK LVSDKFD P ++L+GDFNSVPGD+VY+YL+SG SM P E +DLP+PL SVYA+ RGEP+FTNCTPGFTGTLDYI FSPSG + P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIGA+F
Sbjct: 17 SKMSTTPGPLCRKFVPVEQSEVTSISKPASFKFRLVSYNILAQAYVKSTYFPHSPAPCLKWKARSQAILTILKSLEADFLCLQEVDEYDTFYKKNMENLGYASIYIQRSGRKRDGCGIFYNQNSAELVIEEEIDYNDLVDTVEDGTTSPKEKYGVLVSGNKEEPKAGSKL--KDSQADRGDPNDPRVRLKRDCVGIMAAFRLQNPSSHHVIIANTHLYWDPEWADVKIAQAKYLLSRLAAFKDLVSDKFDCSPPIILAGDFNSVPGDQVYQYLVSGTNSMGP--EMADDLPMPLSSVYAFTRGEPEFTNCTPGFTGTLDYIFFSPSGDLKPVSYLELPEAESSDVIGGLPNYFHPSDHLPIGAEF 377
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TC70 ((carbon catabolite repressor protein 4 homolog 4-like isoform X2 {ECO:0000313|RefSeq:XP_011082145.1, ECO:0000313|RefSeq:XP_011082146.1}))
HSP 1 Score: 510.76 bits (1314), Expect = 6.008e-180
Identity = 244/363 (67.22%), Postives = 290/363 (79.89%), Query Frame = 0
Match: A0A6I9TC70 ((carbon catabolite repressor protein 4 homolog 4-like isoform X2 {ECO:0000313|RefSeq:XP_011082145.1, ECO:0000313|RefSeq:XP_011082146.1}))
HSP 1 Score: 510.76 bits (1314), Expect = 6.008e-180
Identity = 244/363 (67.22%), Postives = 290/363 (79.89%), Query Frame = 0
Query: 24 MSATTGPVIRKFIPVEHSQT------HGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADF 379
MS T GP+ RKF+PVE S+ K RLVSYNILAQAYVKS+ FPHSPAPCLKWKAR Q +LT+L+S EAD LCLQEVDEYDTFYK N+E+ GY+S+YIQRSG KRDGCGIFY N ELV++E+IDYNDLV+++++ + VS + + + L KD++ DRGDPNDPRVRLKRDCVGIM AFRL+ S H VI+ANTH+YWDP+WADVK+AQ KYLLSRLA FK LVSDKFD P ++L+GDFNSVPGD+VY+YL+SG SM P E +DLP+PL SVYA+ RGEP+FTNCTPGFTGTLDYI FSPSG + P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIGA+F
Sbjct: 1 MSTTPGPLCRKFVPVEQSEVTSISKPASFKFRLVSYNILAQAYVKSTYFPHSPAPCLKWKARSQAILTILKSLEADFLCLQEVDEYDTFYKKNMENLGYASIYIQRSGRKRDGCGIFYNQNSAELVIEEEIDYNDLVDTVEDGTTSPKEKYGVLVSGNKEEPKAGSKL--KDSQADRGDPNDPRVRLKRDCVGIMAAFRLQNPSSHHVIIANTHLYWDPEWADVKIAQAKYLLSRLAAFKDLVSDKFDCSPPIILAGDFNSVPGDQVYQYLVSGTNSMGP--EMADDLPMPLSSVYAFTRGEPEFTNCTPGFTGTLDYIFFSPSGDLKPVSYLELPEAESSDVIGGLPNYFHPSDHLPIGAEF 359
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H7V6 ((Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 {ECO:0000313|EMBL:PIN13607.1}) (3.1.13.4 {ECO:0000313|EMBL:PIN13607.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 7.923e-180
Identity = 244/370 (65.95%), Postives = 293/370 (79.19%), Query Frame = 0
Match: A0A2G9H7V6 ((Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 {ECO:0000313|EMBL:PIN13607.1}) (3.1.13.4 {ECO:0000313|EMBL:PIN13607.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 7.923e-180
Identity = 244/370 (65.95%), Postives = 293/370 (79.19%), Query Frame = 0
Query: 21 HSKMSATTGPVIRKFIPVEH------SQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMD-KITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVIRT 383
+ MS+T GP+ RKF+PVE S+ G K RLVSYNILAQAYVKS+ FPHSPAPCLKWKAR Q +LT+L+ EAD LCLQEVDEYDTFYK N+E+ GY+S+Y+QRSG KRDGCGIFY+ N ELV++EKIDYNDLV S+++ E + VS+ E+D+ +L+ +DRGDPNDPRVRLKRDCVG M AFRLK S H VI+ANTHIYWDP+WADVK+AQ KYLLSRLA FK L+S+KFD PS++++GDFNSVPGD VY+YL+SG S P+ E ++LPIPL SVYA+ R EP+FTNCTPGFTGTLDYI FSPSG I P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIGA+F +
Sbjct: 16 YGTMSSTPGPLCRKFVPVEQGEVTSISKPAGFKFRLVSYNILAQAYVKSAYFPHSPAPCLKWKARSQAILTLLKGLEADFLCLQEVDEYDTFYKTNMENLGYASIYVQRSGRKRDGCGIFYKQNCAELVIEEKIDYNDLVPSVEDSETTSTDNEGNELVSENEKDSKMGSELK-DSQEDRGDPNDPRVRLKRDCVGTMAAFRLKSPSPHHVIIANTHIYWDPEWADVKIAQAKYLLSRLAGFKKLISNKFDCSPSIIVAGDFNSVPGDLVYKYLVSGTNSTAPETE--DELPIPLSSVYAFTRREPEFTNCTPGFTGTLDYIFFSPSGDIKPVSYLELPEAESSDVNGGLPNYFHPSDHLPIGAEFEVEA 382
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7Q424 ((Glucose-repressible alcohol dehydrogenasetranscriptional effector {ECO:0000313|EMBL:GER39814.1}))
HSP 1 Score: 497.664 bits (1280), Expect = 1.343e-174
Identity = 242/369 (65.58%), Postives = 293/369 (79.40%), Query Frame = 0
Match: A0A5A7Q424 ((Glucose-repressible alcohol dehydrogenasetranscriptional effector {ECO:0000313|EMBL:GER39814.1}))
HSP 1 Score: 497.664 bits (1280), Expect = 1.343e-174
Identity = 242/369 (65.58%), Postives = 293/369 (79.40%), Query Frame = 0
Query: 21 HSKMSATTGPVIRKFIPVEHSQ-----THGS-KLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGM-DKITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 381
+SKMS GP+ RKF+PVE S+ H S K LV+YN+LAQAYVKS+ FPHSPAPCLKWKAR + +LTVL+S +D CLQEVDEYDTFYK N+ES GY+S+YIQRSG KRDGCGIFY+ N ELV++EKIDYNDLV+ +Q+ + +K+ V +++ + K L+ KD++ DRGD DPRVRLKRDCVG M AFRLKE S VI+ANTH+YWDP+WADVK+AQ KYLLSRLA FK LVS+KFD PSV+++GDFNSVPGD+VY+YL+SG SMEP E +D PIPL SVYAY +GEP+FTNCTPGFT TLDYILFSPS I P+SYL+LP ++SSDV GGLPNY+HPSDHLPIGA+F +
Sbjct: 16 YSKMSTAPGPICRKFVPVEQSEITSTLNHASFKFSLVAYNVLAQAYVKSAYFPHSPAPCLKWKARSESILTVLKSLGSDFFCLQEVDEYDTFYKKNMESLGYASIYIQRSGRKRDGCGIFYKQNNAELVVEEKIDYNDLVDMVQDGKTSSTDTGEKLLVGESKVEL--KAGLEQKDSQTDRGDLLDPRVRLKRDCVGTMAAFRLKELSSRHVIIANTHLYWDPEWADVKIAQAKYLLSRLAGFKKLVSEKFDCSPSVIVAGDFNSVPGDQVYQYLVSGTNSMEP--EAVDDKPIPLSSVYAYTKGEPEFTNCTPGFTDTLDYILFSPSDDIKPVSYLELPSSESSDVIGGLPNYFHPSDHLPIGAEFEV 380
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TFE7 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})
HSP 1 Score: 496.893 bits (1278), Expect = 4.473e-174
Identity = 243/367 (66.21%), Postives = 290/367 (79.02%), Query Frame = 0
Match: D7TFE7 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})
HSP 1 Score: 496.893 bits (1278), Expect = 4.473e-174
Identity = 243/367 (66.21%), Postives = 290/367 (79.02%), Query Frame = 0
Query: 22 SKMSATTGPVIRKFIPVE------HSQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDT-KDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 381
SKMS P+I KFI VE S G + LVSYNILAQ YVKSSLFPHSP+PCLKWKAR Q +LTVLR+ AD LCLQEVDEYD+FYKGN++S+GYSS+Y+QRSG K DGCGIFY++N ELV++EKI+YNDLV+ + ++ + T + D K+ P++T ++RGDPNDPRVRLKRDCVGIM AFRLK+ S H VIVANTH+YWDP+WADVKLAQ KYLLSRLA+FKT+VSDKF+ PSVL++GDFNS PGDKVY+YL+SGN S+ PQLE + LPIPL SVY + RGEP FTNCTP FT TLDYI FSPSG I P+S+L+LPE DSSDV GGLPN++HPSDHLPIGA+F +
Sbjct: 26 SKMSTAAAPIIPKFISVEGVDINSRSIPDGFRFSLVSYNILAQVYVKSSLFPHSPSPCLKWKARSQAILTVLRNLGADFLCLQEVDEYDSFYKGNMDSNGYSSIYVQRSGQKHDGCGIFYKHNSAELVLEEKIEYNDLVD-LNDDGSYSNDRHCDTPASANSDAEPKKGSSPQNTTEERGDPNDPRVRLKRDCVGIMAAFRLKDPSHHLVIVANTHLYWDPEWADVKLAQAKYLLSRLAQFKTVVSDKFECTPSVLVAGDFNSTPGDKVYQYLVSGNSSV-PQLECLDGLPIPLCSVYDFTRGEPPFTNCTPDFTNTLDYIFFSPSGHIKPVSFLELPEPDSSDVAGGLPNHHHPSDHLPIGAEFKV 390
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830BHQ7 ((Carbon catabolite repressor protein 4 homolog 4 {ECO:0000313|EMBL:GFP81561.1}))
HSP 1 Score: 496.893 bits (1278), Expect = 8.638e-174
Identity = 239/370 (64.59%), Postives = 296/370 (80.00%), Query Frame = 0
Match: A0A830BHQ7 ((Carbon catabolite repressor protein 4 homolog 4 {ECO:0000313|EMBL:GFP81561.1}))
HSP 1 Score: 496.893 bits (1278), Expect = 8.638e-174
Identity = 239/370 (64.59%), Postives = 296/370 (80.00%), Query Frame = 0
Query: 21 HSKMSATTGPVIRKFIPVEHSQTH------GSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKL-ELVMQEKIDYNDLVNSIQEEEALCAGMD-KITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 381
+S+MS+ GP+ RKF+PVE S+ K RLVSYNILAQAYVKSS FPHSPAPCLKWKAR Q +LTVL++ EAD LCLQEVDEYD+FYK N+ES GY+S+YIQRSG KRDGCGIFY+ NK ELV++EKIDYNDLV+++ + + D K V + + + SK D+ KD++ DRGDPNDPRVR KRDCVGIM AFRL + +I+ANTH+YWDP+WADVK++Q KYLLSRL+ FK LVS+KFD PS++++GDFNSVPGD+VY+YL+SG + P+ ++LPIPL SVYAY +GEP+FTNCTPGFTGTLDYILFSPS I P+SYL+LP ++SSDV+GGLPNY+HPSDHLPIGA+F +
Sbjct: 44 YSQMSSIPGPICRKFVPVEQSEISSIGKHDAFKFRLVSYNILAQAYVKSSYFPHSPAPCLKWKARSQAVLTVLKNLEADFLCLQEVDEYDSFYKKNMESLGYASIYIQRSGKKRDGCGIFYKQNKYAELVIEEKIDYNDLVDTVGDPKTSSVDKDNKAQVGEIKEE--SKADINQKDSQVDRGDPNDPRVRFKRDCVGIMAAFRLDNPTCQHIIIANTHLYWDPEWADVKISQAKYLLSRLSGFKKLVSNKFDCSPSIIVTGDFNSVPGDQVYQYLVSGANLVGPETVD-DNLPIPLSSVYAYTKGEPEFTNCTPGFTGTLDYILFSPSSDIKPVSYLELPGSESSDVRGGLPNYFHPSDHLPIGAEFEV 410
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6PBB8 ((Putative poly(A)-specific ribonuclease {ECO:0000313|EMBL:PRQ19224.1}) (3.1.13.4 {ECO:0000313|EMBL:PRQ19224.1}))
HSP 1 Score: 494.967 bits (1273), Expect = 3.225e-173
Identity = 246/394 (62.44%), Postives = 296/394 (75.13%), Query Frame = 0
Match: A0A2P6PBB8 ((Putative poly(A)-specific ribonuclease {ECO:0000313|EMBL:PRQ19224.1}) (3.1.13.4 {ECO:0000313|EMBL:PRQ19224.1}))
HSP 1 Score: 494.967 bits (1273), Expect = 3.225e-173
Identity = 246/394 (62.44%), Postives = 296/394 (75.13%), Query Frame = 0
Query: 1 MLLNLRLPSLPCRAVVYSCLHS------KMSATTGPV-IRKFIPVEHS------QTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 381
ML +P LP + + L S KMS+T P+ + +F+ V+ S + G + LVSYNILAQAYVKSSLFPHSP+ CLKWKAR Q +L+VL++ D LCLQEVDEY++FYKGN+ES GYSS YIQRSG KRDGCGIFY++N ELV+++ IDYNDLVNS QE L + +D SK + K T+DRGDPNDPRVRLKRDCVG++ AF+LK S++ VIVANTHIYWDP+WADVKLAQ KYLLSRLA+FK LVSDKF+ PS++++GDFNS PGDKVY+YLISGN S P L+ EDLPIPL SVY RGEP FTN TPGFTGTLDYI FSPS +I P+S+L+LPE +SSD+ GGLPN+ HPSDHLPIGA+FVI
Sbjct: 1 MLRRTTIPVLPRLPIPFFSLTSGRSVPTKMSSTQSPIKLPRFVSVQESGISSLSKPDGIRFSLVSYNILAQAYVKSSLFPHSPSSCLKWKARSQAILSVLKNLGVDFLCLQEVDEYESFYKGNMESSGYSSTYIQRSGQKRDGCGIFYKHNMAELVLEDIIDYNDLVNSTQEGNVLDDDKQYDKDAIASKDPGSKNGSKSKSTQDRGDPNDPRVRLKRDCVGLIAAFKLKNPSQNVVIVANTHIYWDPEWADVKLAQAKYLLSRLARFKKLVSDKFECTPSLIVAGDFNSTPGDKVYQYLISGNSSSAPTLDVVEDLPIPLCSVYGSTRGEPPFTNYTPGFTGTLDYIFFSPSDNIQPVSFLELPEPESSDIVGGLPNFNHPSDHLPIGAEFVI 394
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022RB43 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})
HSP 1 Score: 493.426 bits (1269), Expect = 6.345e-173
Identity = 241/372 (64.78%), Postives = 291/372 (78.23%), Query Frame = 0
Match: A0A022RB43 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})
HSP 1 Score: 493.426 bits (1269), Expect = 6.345e-173
Identity = 241/372 (64.78%), Postives = 291/372 (78.23%), Query Frame = 0
Query: 21 HSKMSATTGPVIRKFIPVEHSQT------HGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEE--EALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLP-IPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVIRT 383
+SKMS+T GP+ RKF+PVE S+ G K RLVSYNILAQAYVKSS FPHSP P LKWKAR Q +LTVL+S EAD LCLQEVDEY+TFYK N+ES GY+S+++QR G KRDGCGIFY+ N ELV++EKIDYNDLV I++E ++ K+ V+ T KE+ + ++ +RGDPNDPRVRLKRDCVG M AFRLK S H +I+ANTH+YWDP+WADVK+AQ KYLLSRL+ F+ LVS+KFD PSV+++GDFNSVPGD+VY YLISG + P E +++P IPL SVYA+ RGEP+FTNCTPGFT TLDYI FSPS I P+SYLDLPEA+SSDV GGLPNY+HPSDHLPIGA+F +
Sbjct: 16 YSKMSSTPGPMCRKFVPVEQSEVTSISKDAGFKFRLVSYNILAQAYVKSSYFPHSPPPSLKWKARSQAILTVLKSLEADFLCLQEVDEYETFYKKNMESLGYASIHVQRGGRKRDGCGIFYKQNNAELVIEEKIDYNDLVELIEDETNSSVDNSDKKLIVAGT------KEESKAENEVERGDPNDPRVRLKRDCVGTMAAFRLKSPSCHHIIIANTHLYWDPEWADVKIAQAKYLLSRLSGFQKLVSEKFDCSPSVIVAGDFNSVPGDQVYRYLISGTNVVGP--ETADEVPKIPLSSVYAFTRGEPEFTNCTPGFTDTLDYIFFSPSRDIKPVSYLDLPEAESSDVSGGLPNYFHPSDHLPIGAEFEVEA 379
BLAST of XM_017371402.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9S1N8 ((RNA exonuclease NGL1, putative {ECO:0000313|EMBL:EEF42507.1}) (3.1.13.4 {ECO:0000313|EMBL:EEF42507.1}))
HSP 1 Score: 492.271 bits (1266), Expect = 1.920e-171
Identity = 236/387 (60.98%), Postives = 295/387 (76.23%), Query Frame = 0
Match: B9S1N8 ((RNA exonuclease NGL1, putative {ECO:0000313|EMBL:EEF42507.1}) (3.1.13.4 {ECO:0000313|EMBL:EEF42507.1}))
HSP 1 Score: 492.271 bits (1266), Expect = 1.920e-171
Identity = 236/387 (60.98%), Postives = 295/387 (76.23%), Query Frame = 0
Query: 3 LNLRLPS-LPCRAVVYSCLHSKMSATTGPVIRKFIPVEH------SQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDT-KDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 381
L + LP+ LP + + KM+ P+ KFIPV+ ++ G ++RLVSYNILAQ YVKSS FPH P+P LKWK+R + +LT+L++ EAD LCLQEVDEYD+FYK N+E HGYSS+YIQRSG KRDGCGIFY+++ EL+++E+I+YNDLVNS+QEE LC T ++ ++ K K T +DRGDPNDPRVRLKRDC+GIM AFRLK++ H VIVANTH+YWDP+WADVKLAQ KYLLSRL++FK LVS++F+ PS+ L+GDFNS+PGDKVY+Y++SGN S P +E +DLPIPL SVY + RGEP FTNCTP FT TLDYI FSP I PIS+L+LPE +S DV GGLPN+YHPSDHLPIGA+F I
Sbjct: 54 LLVSLPTRLPFPSFTRTICMRKMTTAPSPISPKFIPVQAPHVFSTTKPDGIRVRLVSYNILAQVYVKSSYFPHCPSPSLKWKSRSKAILTILKNLEADFLCLQEVDEYDSFYKQNMEIHGYSSIYIQRSGQKRDGCGIFYKHDCAELLLEERIEYNDLVNSVQEEACLCGDKPIETDANGDKSVEPKNGASSKSTPEDRGDPNDPRVRLKRDCIGIMAAFRLKDAFRHIVIVANTHLYWDPEWADVKLAQAKYLLSRLSQFKILVSNQFECSPSLFLAGDFNSIPGDKVYQYVVSGNSSFAPTVECLDDLPIPLCSVYGHTRGEPPFTNCTPDFTNTLDYIFFSPDEKITPISFLELPEGNSPDVLGGLPNFYHPSDHLPIGAEFEI 440
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C3M4 | E-Value: 1.006e-180, PID: 65.19 | Endo/exonuclease/phosphatase domain-containing pro... [more] |
| A0A6I9TM96 | E-Value: 1.127e-180, PID: 67.40 | (carbon catabolite repressor protein 4 homolog 4-l... [more] |
| A0A6I9TC70 | E-Value: 6.008e-180, PID: 67.22 | (carbon catabolite repressor protein 4 homolog 4-l... [more] |
| A0A2G9H7V6 | E-Value: 7.923e-180, PID: 65.95 | (Glucose-repressible alcohol dehydrogenase transcr... [more] |
| A0A5A7Q424 | E-Value: 1.343e-174, PID: 65.58 | (Glucose-repressible alcohol dehydrogenasetranscri... [more] |
| D7TFE7 | E-Value: 4.473e-174, PID: 66.21 | Endo/exonuclease/phosphatase domain-containing pro... [more] |
| A0A830BHQ7 | E-Value: 8.638e-174, PID: 64.59 | (Carbon catabolite repressor protein 4 homolog 4 {... [more] |
| A0A2P6PBB8 | E-Value: 3.225e-173, PID: 62.44 | (Putative poly(A)-specific ribonuclease {ECO:00003... [more] |
| A0A022RB43 | E-Value: 6.345e-173, PID: 64.78 | Endo/exonuclease/phosphatase domain-containing pro... [more] |
| B9S1N8 | E-Value: 1.920e-171, PID: 60.98 | (RNA exonuclease NGL1, putative {ECO:0000313|EMBL:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |