Resource Type:
Polypeptide
Name:
XM_017371148.1
Identifier:
XM_017371148.1-protein
Sequence:
MSTLFYLNPSSSILNHPHSHFKTPPKRPSSYITSGGPPQPTPPQQLQTFW
QWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPE
SVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDST
IFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTI
TVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIK
GAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSD
RVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPY
LRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSAL
AGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQE
LDELEYYQERRLRDLGLVGEQGDIIFWEPK
Sequence Length:
480
Sequence Checksum:
404d9db2023522d71d18286ddc4eab82
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371148.1, derives from mRNA, XM_017371148.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251S8I7 ((Putative rubisco methyltransferase family protein {ECO:0000313|EMBL:OTF94882.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 351/482 (72.82%), Postives = 399/482 (82.78%), Query Frame = 0
Match: A0A251S8I7 ((Putative rubisco methyltransferase family protein {ECO:0000313|EMBL:OTF94882.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 351/482 (72.82%), Postives = 399/482 (82.78%), Query Frame = 0
Query: 1 MSTLFYLNPSSSILNHPHSHFKTPPKRPSSYITSGGPPQPTPPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGE--SWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWEPK 480
MST F + + I P H + P+ P + TFW+W S+EKVV+ KSPAKPG V+EGLGLVAQRDI+RNEVVLEVPK+ WINP++V+ SEIG VC+GLKPW+CVALFLIREK+RG + S W +Y+D+LPE TDSTIFWSEEEL +I+GTQLLSTT+ K+YV++EFL+V++++ILPN++LFP T+T+EDF+WAFGILRSRAFSRLRGQNLVLIPLADLINHS SI TEDYAYEIKG GLFSR+ IFSLRSP+ VKAGEQVLIQYD+NKSNAELALDYGFIES DR TYTL L I+ESD F DKLDIAE NG YFDITL QPLP +MLPYLRLVALGGTDAFLLESIFRNAVWDHL+LPVSR NEEVICQVVR AC+SAL+ Y TT+EED+KL GN+ PRL IAVGIRAGEKKVL HID IFKERE ELDE EYYQERRLRDLGLVGEQGDIIFWEPK
Sbjct: 1 MSTFFTFSTPNPIKPKPFLH---------RFTVKCTATPPSLPPAVNTFWKWFSDEKVVSSKSPAKPGTVTEGLGLVAQRDIARNEVVLEVPKRFWINPDTVSGSEIGRVCNGLKPWICVALFLIREKLRGDDEASSWRKYVDILPESTDSTIFWSEEELSQIEGTQLLSTTLSVKEYVKNEFLQVQDQVILPNKQLFPFTVTLEDFIWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITTEDYAYEIKGGGLFSREQIFSLRSPIPVKAGEQVLIQYDMNKSNAELALDYGFIESTPDRNTYTLTLQISESDPFFDDKLDIAEANGTKEVQYFDITLGQPLPPKMLPYLRLVALGGTDAFLLESIFRNAVWDHLELPVSRDNEEVICQVVRGACQSALSSYRTTIEEDQKLMEGGNMDPRLAIAVGIRAGEKKVLQHIDGIFKEREMELDENEYYQERRLRDLGLVGEQGDIIFWEPK 473
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6Q469 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 342/443 (77.20%), Postives = 393/443 (88.71%), Query Frame = 0
Match: A0A5N6Q469 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 342/443 (77.20%), Postives = 393/443 (88.71%), Query Frame = 0
Query: 40 PTPPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESW--WWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWEPK 480
P+ P +QTFWQWL++EKVV+ KSPAKPG V+EGLGLVAQRDI+RNEVVLEVPKK WINP++V+ASEIG VC+GLKPW+ VALFLIREK+R + + W YID+LPECTDSTIFWSEEEL EI+GTQLLSTT+ K+YV++EFL+V+E++ILPN++ FP ++T+EDF+WAFGILRSRAFSRLRGQNLVLIPLADLINHS SI +EDYAYEIKGAGLFSRD IFSLRSP+ VKAG+QVLIQYD+NKSNAELALDYGFIES DR TYTL L I+ SD+ F DKLDIAE NG YFDITL +PLP +MLPYLRLVALGGTDAFLLESIFRNAVWDHL+LPVSR NEEVICQVVR+AC+SAL+ Y T++EEDEKL+ + +++ RL+IAVGIRAGEKKVL HID IFKERE ELDE EYYQERRLRDLGLVGEQGDIIFWEPK
Sbjct: 52 PSLPAPVQTFWQWLTDEKVVSSKSPAKPGTVTEGLGLVAQRDIARNEVVLEVPKKFWINPDTVSASEIGRVCNGLKPWISVALFLIREKLRADDDYSPWRSYIDILPECTDSTIFWSEEELSEIEGTQLLSTTLSVKEYVKNEFLQVQEQVILPNKQFFPFSVTLEDFIWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITSEDYAYEIKGAGLFSRDQIFSLRSPIPVKAGQQVLIQYDMNKSNAELALDYGFIESTPDRNTYTLTLQISNSDQFFDDKLDIAEMNGTKEVQYFDITLGRPLPPKMLPYLRLVALGGTDAFLLESIFRNAVWDHLELPVSRDNEEVICQVVRSACQSALSSYQTSIEEDEKLERE-DITHRLKIAVGIRAGEKKVLQHIDGIFKEREMELDEYEYYQERRLRDLGLVGEQGDIIFWEPK 493
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061EA07 ((Rubisco methyltransferase family protein {ECO:0000313|EMBL:EOY01840.1}))
HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 349/482 (72.41%), Postives = 408/482 (84.65%), Query Frame = 0
Match: A0A061EA07 ((Rubisco methyltransferase family protein {ECO:0000313|EMBL:EOY01840.1}))
HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 349/482 (72.41%), Postives = 408/482 (84.65%), Query Frame = 0
Query: 10 SSSILNHPHSHFKTPPKRP-----------SSYITSGGPPQPTPPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWEPK 480
SS+ L H + F T P P ++++ S P PP ++QTFWQWL ++ VV+ KSP +PG+V EGLGL+A++DISRNEVVLE+P + WIN ++VAASEIGSVCSGLKPW+ VALFLIREK++ +S W Y+D+LPE TDST+FWSEEEL E+QGTQLLSTT+G K+YVQ+EFL+VEEEIILPN++LFP+ ITV+DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS SI TEDYA+EIKGAGLFSRDL+FSLRSP++VKAGEQVLIQYDLNKSNAELALDYGF+ES S+R YTL L+I+ESD FGDKLDIAETNG+ TAYFDI L +PLP ++PYLRLVALGG+DAFLLESIFRN +W HL LPVSRANEE+IC+VV +ACK+AL+GY+TT+EEDEKL GNL PRL+IAVGIRAGEKKVL ID IFKERE ELDELEYYQERRLRDLGLVGEQG+IIFWE K
Sbjct: 20 SSTTLKH-LTAFTTKPTVPIHLTKRNICLSAAFVHS---PTTDPPPEVQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKDISRNEVVLEIPNRFWINQDAVAASEIGSVCSGLKPWISVALFLIREKLKE-DSQWRVYLDILPEFTDSTVFWSEEELAELQGTQLLSTTLGVKEYVQNEFLKVEEEIILPNKQLFPAPITVDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITTEDYAWEIKGAGLFSRDLLFSLRSPLSVKAGEQVLIQYDLNKSNAELALDYGFVESKSERNAYTLTLEISESDPFFGDKLDIAETNGLGETAYFDIVLGRPLPPALIPYLRLVALGGSDAFLLESIFRNTIWGHLDLPVSRANEELICRVVCDACKAALSGYHTTIEEDEKLMEGGNLDPRLEIAVGIRAGEKKVLQQIDEIFKERESELDELEYYQERRLRDLGLVGEQGEIIFWETK 496
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6WS52 ((Fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic {ECO:0000313|EMBL:KAA3483727.1}))
HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 345/465 (74.19%), Postives = 398/465 (85.59%), Query Frame = 0
Match: A0A5B6WS52 ((Fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic {ECO:0000313|EMBL:KAA3483727.1}))
HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 345/465 (74.19%), Postives = 398/465 (85.59%), Query Frame = 0
Query: 16 HPHSHFKTPPKRPSSYITSGGPPQPT--PPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
P S F T P ++ T PPQQLQTFWQWL ++ VV+ KSP +PG+V EGLGL+A+++ISRNEVVLE+P + WINP++VAASEIG+VCSGLKPWV VALFLIRE+ R +S W Y+D+LPE TDST+FWSEEEL E+QGTQLLSTT+G K+YVQ+EFL+VEEEIILPN+++FPS IT++DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS +I TEDYA+EIKGAGLFSRDL+FSLRSPV+VKAGEQVLIQYDL+KSNAELALDYGFIES S+R YTL L+I+ESD FGDKLDIAETNG+ T YFDI L +PLP ++PYLRLVALGGTDAFLLESIFRN +W HL LPVSRANEE+IC+VVR+ACKSAL+GY+TT+EEDEKL D NL RL+IAVGIRAGEKKVL ID IFK RE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 23 RPFSSFSTKPTLSIHFVKKPISVSATADPPQQLQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKNISRNEVVLEIPNRFWINPDAVAASEIGTVCSGLKPWVSVALFLIRERFRQ-DSKWRVYLDILPELTDSTVFWSEEELAELQGTQLLSTTLGVKEYVQNEFLKVEEEIILPNKQIFPSPITLDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPNITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAGEQVLIQYDLDKSNAELALDYGFIESKSERNAYTLTLEISESDPFFGDKLDIAETNGLGETTYFDIVLGRPLPPALIPYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSRANEELICRVVRDACKSALSGYHTTIEEDEKLMEDENLDSRLKIAVGIRAGEKKVLQQIDEIFKARESELDELEYYQERRLKDLGLVGEQGEIIFWE 486
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6BIB5 ((fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic {ECO:0000313|RefSeq:XP_022776821.1}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 350/481 (72.77%), Postives = 403/481 (83.78%), Query Frame = 0
Match: A0A6P6BIB5 ((fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic {ECO:0000313|RefSeq:XP_022776821.1}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 350/481 (72.77%), Postives = 403/481 (83.78%), Query Frame = 0
Query: 7 LNPSSSILNHPHSHFKTPP-------KRPSSYITSG--GPPQPTPPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
+ SS+ L H S F P K+P S + P PP ++QTFWQWL ++ V++ KSP KPG+V EG GL+A++DISRNEVVLE+P + WIN ++VAASEIGSVCSGLKPW VALFLIREK+R +S W Y+D+LPE T+ST+FWSEEEL E+QGTQLLSTT+G K+YV++EFL+VEEEIIL N++LFP+ IT++DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS SI TEDYA+EIKGAGLFSRDL+FSLRSPV+VKAGEQVLIQYDLNKSNAELALDYGF+ES S+R YTL L+I ESD FGDKLDIAETNG+ TAYFDI LDQPLP ++PYLRLVALGGTDAFLLESIFRN VW HL LPVSRANEE+IC+VVR+ACKSAL+GY+TT+EEDEKL GNL PRL+IAVGIR GEKKVL ID IFKERE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 18 FHSSSTTLKH-FSSFTAKPTLSIHLTKKPISLSATSLHSPATDDPPPEVQTFWQWLCDQGVISAKSPVKPGMVPEGFGLIAKKDISRNEVVLEIPNRFWINQDAVAASEIGSVCSGLKPWESVALFLIREKLRE-DSKWRVYLDILPELTNSTVFWSEEELAELQGTQLLSTTLGVKEYVRNEFLKVEEEIILANKQLFPAPITLDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAGEQVLIQYDLNKSNAELALDYGFVESKSERNAYTLTLEIPESDPFFGDKLDIAETNGLGETAYFDIVLDQPLPPGLIPYLRLVALGGTDAFLLESIFRNTVWGHLDLPVSRANEELICRVVRDACKSALSGYHTTIEEDEKLMEGGNLDPRLEIAVGIREGEKKVLQQIDEIFKERESELDELEYYQERRLKDLGLVGEQGEIIFWE 496
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2VWV3 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 703.745 bits (1815), Expect = 0.000e+0
Identity = 347/470 (73.83%), Postives = 398/470 (84.68%), Query Frame = 0
Match: A0A5D2VWV3 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 703.745 bits (1815), Expect = 0.000e+0
Identity = 347/470 (73.83%), Postives = 398/470 (84.68%), Query Frame = 0
Query: 16 HPHSHFKTPP-------KRPSSYITSGGPPQPTPPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
P S F T P KRP S + PP QLQTFWQWL ++ VV+ KSP +PG+V EGLGL+A+++ISRNEVVLE+P + WIN E+VAASEIG+VCSGLKPWV VALFLIRE+ R +S W Y+D+LPE TDST+FWSEEEL E+QGTQLLSTT+G K+YVQ+EFL+VEEEIILPN++LFP+ IT +DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS +I TEDYA+EIKGAGLFSRDL+FSLRSPV+VKAGEQVLIQYDL+KSNAELALDYGFIES S+R YTL L+I+ESD FGDKLDIAETNG+ TAYFDI L +PLP ++PYLRLVALGGTDAFLLESIFRN +W HL LPVSRANEE+IC+V+R+ACKSAL+GY+TT+EEDEKL D NL RL+IAVGIRAGEKKVL ID IFK RE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 23 KPFSSFSTKPTLSIHFVKRPISVSATA-----DPPPQLQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKNISRNEVVLEIPNRFWINQEAVAASEIGTVCSGLKPWVSVALFLIRERFRQ-DSQWRVYLDILPELTDSTVFWSEEELAELQGTQLLSTTLGVKEYVQNEFLKVEEEIILPNKQLFPAPITSDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPNITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAGEQVLIQYDLDKSNAELALDYGFIESKSERNAYTLTLEISESDPFFGDKLDIAETNGLGETAYFDIVLGRPLPPALIPYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSRANEELICRVIRDACKSALSGYHTTIEEDEKLMEDENLDSRLKIAVGIRAGEKKVLQQIDEIFKGRESELDELEYYQERRLKDLGLVGEQGEIIFWE 486
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0D2SGU5 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 347/470 (73.83%), Postives = 398/470 (84.68%), Query Frame = 0
Match: A0A0D2SGU5 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 347/470 (73.83%), Postives = 398/470 (84.68%), Query Frame = 0
Query: 16 HPHSHFKTPP-------KRPSSYITSGGPPQPTPPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
P S F T P KRP S + PP QLQTFWQWL ++ VV+ KSP +PG+V EGLGL+A+++ISRNEVVLE+P + WIN E+VAASEIG+VCSGLKPWV VALFLIRE+ R +S W Y+D+LPE TDST+FWSEEEL E++GTQLLSTT+G K+YVQ+EFL+VEEEIILPN++LFP+ IT +DF WAFGILRSRAFSRLRGQNLVLIP+ADLINHS +I TEDYA+EIKGAGLFSRDL+FSLRSPV+VKAGEQVLIQYDL+KSNAELALDYGFIES S+R YTL L+I+ESD FGDKLDIAETNG+ TAYFDI L +PLP ++PYLRLVALGGTDAFLLESIFRN +W HL LPVSRANEE+ICQVVR+ACKSAL+GY+TT+EEDEKL D NL RL+IAVGIRAGEKKVL ID IFK RE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 23 KPFSSFSTKPTLSIHFVKRPISVSATADPPP-----QLQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKNISRNEVVLEIPNRFWINQEAVAASEIGTVCSGLKPWVSVALFLIRERFRQ-DSKWRVYLDILPELTDSTVFWSEEELAELRGTQLLSTTLGVKEYVQNEFLKVEEEIILPNKQLFPAPITSDDFFWAFGILRSRAFSRLRGQNLVLIPIADLINHSPNITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAGEQVLIQYDLDKSNAELALDYGFIESKSERNAYTLTLEISESDPFFGDKLDIAETNGLGETAYFDIVLGRPLPPVLIPYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSRANEELICQVVRDACKSALSGYHTTIEEDEKLMEDENLDSRLKIAVGIRAGEKKVLQQIDEIFKGRESELDELEYYQERRLKDLGLVGEQGEIIFWE 486
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2H5Z9 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 344/465 (73.98%), Postives = 397/465 (85.38%), Query Frame = 0
Match: A0A5D2H5Z9 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 344/465 (73.98%), Postives = 397/465 (85.38%), Query Frame = 0
Query: 16 HPHSHFKTPPKRPSSYITSGGPPQPT--PPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
P S F T P ++ P T PP QLQTFWQWL ++ VV+ KSP +PG+V EGLGL+A+++ISRNEVVLE+P + WIN ++V ASEIG+VCSGLKPWV VALFLIRE+ R +S W Y+D+LPE TDST+FWSEEEL E+QGTQLLSTT+G KDYVQ+EFL+VEEEIILPN++LFP+ IT++DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS +I TEDYA+EIKGAGLFSRDL+FSLRSPV+VKA EQVLIQYDL+KSNAELALDYGFIES S+R YTL L+I+ESD FGDKLDIAETNG++ TAYFDI L +PLP ++PYLRLVALGGTDAFLLESIFRN +W HL LPVSRANEE+IC+VVR+ACKSAL+GY+TT+EEDEKL D NL RL+IAVGIRAGEKKVL ID IFK RE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 23 KPFSSFSTKPTLSIHFVKKPIPVSATADPPPQLQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKNISRNEVVLEIPNRFWINQDAVVASEIGTVCSGLKPWVSVALFLIRERFRQ-DSKWGVYLDILPELTDSTVFWSEEELAELQGTQLLSTTLGVKDYVQNEFLKVEEEIILPNKQLFPAPITLDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPNITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAEEQVLIQYDLDKSNAELALDYGFIESKSERNAYTLTLEISESDPFFGDKLDIAETNGLSETAYFDIVLGRPLPPALIPYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSRANEELICRVVRDACKSALSGYHTTIEEDEKLMEDENLDSRLKIAVGIRAGEKKVLQQIDEIFKGRESELDELEYYQERRLKDLGLVGEQGEIIFWE 486
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5WC72 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 344/465 (73.98%), Postives = 397/465 (85.38%), Query Frame = 0
Match: A0A5J5WC72 (SET domain-containing protein {ECO:0000259|PROSITE:PS50280})
HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 344/465 (73.98%), Postives = 397/465 (85.38%), Query Frame = 0
Query: 16 HPHSHFKTPPKRPSSYITSGGPPQPT--PPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
P S F T P ++ P T PP QLQTFWQWL ++ VV+ KSP +PG+V EGLGL+A+++ISRNEVVLE+P + WIN ++V ASEIG+VCSGLKPWV VALFLIRE+ R +S W Y+D+LPE TDST+FWSEEEL E+QGTQLLSTT+G KDYVQ+EFL+VEEEIILPN++LFP+ IT++DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS +I TEDYA+EIKGAGLFSRDL+FSLRSPV+VKA EQVLIQYDL+KSNAELALDYGFIES S+R YTL L+I+ESD FGDKLDIAETNG++ TAYFDI L +PLP ++PYLRLVALGGTDAFLLESIFRN +W HL LPVSRANEE+IC+VVR+ACKSAL+GY+TT+EEDEKL D NL RL+IAVGIRAGEKKVL ID IFK RE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 23 KPFSSFSTKPTLSIHFVKKPIPVSATADPPPQLQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKNISRNEVVLEIPNRFWINQDAVVASEIGTVCSGLKPWVSVALFLIRERFRQ-DSKWGVYLDILPELTDSTVFWSEEELAELQGTQLLSTTLGVKDYVQNEFLKVEEEIILPNKQLFPAPITLDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPNITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAEEQVLIQYDLDKSNAELALDYGFIESKSERNAYTLTLEISESDPFFGDKLDIAETNGLSETAYFDIVLGRPLPPALIPYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSRANEELICRVVRDACKSALSGYHTTIEEDEKLMEDENLDSRLKIAVGIRAGEKKVLQQIDEIFKGRESELDELEYYQERRLKDLGLVGEQGEIIFWE 486
BLAST of XM_017371148.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4NPX1 ((fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic {ECO:0000313|RefSeq:XP_017641809.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 344/465 (73.98%), Postives = 398/465 (85.59%), Query Frame = 0
Match: A0A6P4NPX1 ((fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic {ECO:0000313|RefSeq:XP_017641809.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 344/465 (73.98%), Postives = 398/465 (85.59%), Query Frame = 0
Query: 16 HPHSHFKTPPKRPSSYITSGGPPQPT--PPQQLQTFWQWLSEEKVVTHKSPAKPGVVSEGLGLVAQRDISRNEVVLEVPKKLWINPESVAASEIGSVCSGLKPWVCVALFLIREKMRGGESWWWRYIDVLPECTDSTIFWSEEELYEIQGTQLLSTTVGCKDYVQSEFLRVEEEIILPNQKLFPSTITVEDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSSSIKTEDYAYEIKGAGLFSRDLIFSLRSPVAVKAGEQVLIQYDLNKSNAELALDYGFIESGSDRVTYTLNLDIAESDENFGDKLDIAETNGMNTTAYFDITLDQPLPKEMLPYLRLVALGGTDAFLLESIFRNAVWDHLQLPVSRANEEVICQVVRNACKSALAGYNTTLEEDEKLKTDGNLSPRLQIAVGIRAGEKKVLHHIDSIFKEREQELDELEYYQERRLRDLGLVGEQGDIIFWE 478
P S F T P ++ P T PP QLQTFWQWL ++ VV+ KSP +PG+V EGLGL+A+++ISRNEVVLE+P + WIN ++VAASEIG+VCSGLKPWV VALFLIRE+ R +S W Y+D+LPE TDST+FWSEEEL E+QGTQLLSTT+G K+YVQ+EFL+VEEEIILPN++LFP+ IT++DF WAFGILRSRAFSRLRGQNLVLIPLADLINHS +I TEDYA+EIKGAGLFSRDL+FSLRSPV+VKA EQVLIQYDL+KSNAELALDYGFIES S+R YTL L+I+ESD FGDKLDIAETNG++ TAYFDI L +PLP ++PYLRLVALGGTDAFLLESIFRN +W HL LPVSRANEE+IC+VVR+ACKSAL+GY+TT+EEDEKL D NL RL+IAVGIRAGEKKVL ID IFK RE ELDELEYYQERRL+DLGLVGEQG+IIFWE
Sbjct: 23 KPFSSFSTKPTLSIHFVKKPIPVSATADPPPQLQTFWQWLQDQGVVSAKSPVRPGMVPEGLGLIAKKNISRNEVVLEIPNRFWINQDAVAASEIGTVCSGLKPWVSVALFLIRERFRQ-DSKWGVYLDILPELTDSTVFWSEEELAELQGTQLLSTTLGVKEYVQNEFLKVEEEIILPNKQLFPAPITLDDFFWAFGILRSRAFSRLRGQNLVLIPLADLINHSPNITTEDYAWEIKGAGLFSRDLLFSLRSPVSVKAEEQVLIQYDLDKSNAELALDYGFIESKSERNAYTLTLEISESDPFFGDKLDIAETNGLSETAYFDIVLGRPLPPALIPYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSRANEELICRVVRDACKSALSGYHTTIEEDEKLMEDENLDSRLKIAVGIRAGEKKVLQQIDEIFKGRESELDELEYYQERRLKDLGLVGEQGEIIFWE 486
| Match Name | Stats | Description |
|---|---|---|
| A0A251S8I7 | E-Value: 0.000e+0, PID: 72.82 | (Putative rubisco methyltransferase family protein... [more] |
| A0A5N6Q469 | E-Value: 0.000e+0, PID: 77.20 | SET domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A061EA07 | E-Value: 0.000e+0, PID: 72.41 | (Rubisco methyltransferase family protein {ECO:000... [more] |
| A0A5B6WS52 | E-Value: 0.000e+0, PID: 74.19 | (Fructose-bisphosphate aldolase-lysine N-methyltra... [more] |
| A0A6P6BIB5 | E-Value: 0.000e+0, PID: 72.77 | (fructose-bisphosphate aldolase-lysine N-methyltra... [more] |
| A0A5D2VWV3 | E-Value: 0.000e+0, PID: 73.83 | SET domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A0D2SGU5 | E-Value: 0.000e+0, PID: 73.83 | SET domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5D2H5Z9 | E-Value: 0.000e+0, PID: 73.98 | SET domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J5WC72 | E-Value: 0.000e+0, PID: 73.98 | SET domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P4NPX1 | E-Value: 0.000e+0, PID: 73.98 | (fructose-bisphosphate aldolase-lysine N-methyltra... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |