XM_017368438.1

Resource Type: 
Polypeptide
Name: 
XM_017368438.1
Identifier: 
XM_017368438.1-protein
Sequence: 
MGKSPGKWIKKVLFGKKGSKSAASAPNPRQMNMPILGTSASTKENLPIKK
EEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAI
RGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRG
QRVRRSIGSEIREREPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLIS
SMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTGSSS
LSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKS
IQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKSDIS
EGISNPVEKVIEVSEKAESKPSDVEISQELPAEGTDSKLDNHSYAPLQPS
ETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKAS
MRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDA
EKYALRRRHSLPSSNSGKFGSSPRMHKLIQASIKGGMRGDRSLMSSRDSS
DSRVIQAEWKR
Sequence Length: 
561
Sequence Checksum: 
1ebc5496bcb87e055aec0a8eac4daa79
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017368438.1, derives from mRNA, XM_017368438.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BC34 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0
Identity = 436/594 (73.40%), Postives = 468/594 (78.79%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKSAASAPNPRQMNMPILGTSASTKENLPIKKEEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRSIGSEIREREPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTGSSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKSDISEGISNPVEKVIEVSEKAESK--------------------------------PSDVEISQELPA-EGTDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGSSPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKWIKKVLFGK+ SKS+    NPRQM +PILGTSAS KE+ PIKK EAT+SP+AEP+L S DI+N ENAP NIS I++SEK  LEQAAI AQAAIRGYQAR+KL SL+ IT+LQALARGHLVRRQAVATLQSVRGIIKIQAL RGQ+VR+SIG EIR REP  E DDQCLSSFGNIGSQRTEMLLKTAFVGKL+S+ PAAMPLQL YEPEEPNSL NWLNRWTLLQVLGPH QFKETIGV G                   +TSS+N+NGLK +  ESE+ KVKLKKV KDPVKS QE PQNGTKKVLRNPKKVSKPLV+TSVK+VAGSERRKHSIGKSSKSDISE ISN VEKVI+VS KAESK                                PSDVE S ELPA E TDSKL+N S  PLQPSE PVQQKEEV                  TLVDEEI+ +     DENKK+SMRRASLPAKHDY EKD+HSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKF SSPR+HKL+QASIKGGMRGDRSLMSSRDSSDSR IQAEWKR
Sbjct:    1 MGKSPGKWIKKVLFGKRASKSSPVNSNPRQMMVPILGTSASKKESPPIKKGEATISPRAEPILSSLDINNSENAPINISSINESEKMSLEQAAIMAQAAIRGYQARKKLQSLQGITKLQALARGHLVRRQAVATLQSVRGIIKIQALFRGQKVRQSIGKEIRVREPRGESDDQCLSSFGNIGSQRTEMLLKTAFVGKLLSTFPAAMPLQLRYEPEEPNSLWNWLNRWTLLQVLGPHLQFKETIGVPG-------------------LTSSENENGLKCNGLESEKFKVKLKKVAKDPVKSTQEQPQNGTKKVLRNPKKVSKPLVDTSVKSVAGSERRKHSIGKSSKSDISEAISNSVEKVIKVSGKAESKHFTGKSSKPDISEVISNPVEEVIKVSGKTEAIPSDVETSLELPAEEATDSKLNNGSNVPLQPSEAPVQQKEEV------------------TLVDEEIRAR-----DENKKSSMRRASLPAKHDYSEKDLHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFSSSPRVHKLVQASIKGGMRGDRSLMSSRDSSDSRAIQAEWKR 552    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YRG2 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 391.734 bits (1005), Expect = 1.318e-127
Identity = 263/596 (44.13%), Postives = 341/596 (57.21%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKS-------------------AASAP------NPRQMNMPILGTSASTKENLPIKKEEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS-IGSEIREREPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFK--ETIGVTGSSSL-SVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSK---SDISE-GISNPVEKVIEVSEKAESKPSDVEIS-QELPAEGTDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQA-SPNFDQDDAEKYALRRRHSLPSSNSGKFGSSPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKWIK VLFGKK SKS                   +A  P      +P  ++ P+    A   EN   +K  A+  P  E +L S     D     N+    DSE+ RLEQAA + QAA RGY A     +L+ I RLQAL RGHLVRRQAVATL  V  I+K+QALVRGQ+VRRS IGS++ +++   ++D +CL S     S + E LL  AFV KL+SS PA +PL L Y+P EPNS  +WL RWT+  V G +SQ K  +    T   S  +V  ++ R + SV R+  ++ +NGL +S  ESE+ K   +KV   P  S+QEHPQN  +KV  N KK S P  ETS++    +E+ K    K+S     D+ E GI +  EK  +  + A  K SDVE S + L A+    +L  HS   LQP +  +  + E  P+                     +  K+  I++E +K S RRASLPAK DY E  +H+TPRVPSYMA T+SAKAK R Q  SP F QDD EK  L RRHSLPSS +GK   SPR+ +L+QAS KGG+R DRSL+S   S+D +VIQAEW+R
Sbjct:    1 MGKSPGKWIKSVLFGKKASKSNLSGGRDILKSACEKVALVSAKEPASDLGVHPLLISPPVPCPGAGIGEN--SEKGAASRLPNDEVILYSAQEGGDAQETTNLGSPKDSERIRLEQAATSVQAAFRGYLAHRAFQALKGIIRLQALIRGHLVRRQAVATLYCVNRIVKLQALVRGQKVRRSDIGSKLHKKQSLGKLDPKCLDSCKTNTSTQVEKLLVNAFVRKLLSSSPATVPLHLQYDPGEPNSAWDWLRRWTMSHVWGQYSQPKIIDPKSQTRHGSFQTVEAEQVRPKRSVQRLPPANVENGLNKSALESEKLKRNPRKVPNHPANSVQEHPQNEIEKVKCNLKKTSNPTTETSIRPENDTEKPKRIHRKASNIAAPDVPEQGIDDCAEKAKKDIDLAVPKASDVETSPKSLAADRPVDELHEHSAIDLQPKQ--INGRNEAIPL---------------------LSSKHDEISNEYQKTSQRRASLPAKQDYQENGLHNTPRVPSYMATTKSAKAKFRGQQHSPRFGQDDDEKNGLTRRHSLPSSANGKLILSPRVQRLVQASGKGGIRKDRSLLS---STDEKVIQAEWRR 568    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TND0 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 360.918 bits (925), Expect = 2.195e-115
Identity = 252/600 (42.00%), Postives = 339/600 (56.50%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFG---------------KKGSKSAA--SAPNPRQ--------MNMPILGTSASTKENLPIKKEEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS-IGSEIREREPHKEI-DDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTG----SSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSK--SDISE-GISNPVEKVIEVSEKAESKPSDVEISQELPAEGTDSKLDN---HSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNS-GKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKWIK +LFG               K  SK  A   A  P           ++P+  T+A        +K  A+  P    +L S   + D     N+    D E+ R EQAA  AQAA RGY AR    +L+ I RLQAL RG LVRRQA+ATL  V+GI+K QALVRGQ VR S IG+E+ E+   ++  D +C +SFG   S + E L K  FV  L++S P +MPL L Y P EPNS  +WL RWT      P ++ K+ I         +S +V TD++R + SV + TS+  +NG  +S  ES++ K  L+KV+  PV S+QEHP+N T+K     +K  K   + S +    +E+ K S+ KSS   SD  E G  + ++K+ +      SK SD+E S + PAE  +  +DN   H+ A LQ  E     K E  P   K+                 +  K+  I+++++K S RRASLP KHDY E  +H+TPR+PSYMAATESAKAKLRA +SP F QD+A+K  + RRHSLPSS++ GK  S SPR  +L+QAS KG  R DRSLMSSRD S+ +++Q EW+R
Sbjct:    1 MGKSPGKWIKGLLFGKKSSKSNLSKGREISKHASKGDALVCAKVPASDLTVDAPLTSLPVPLTTARNGVVSDSEKGTASRLPNDGVILSSSKENGDTETIMNLGLSKDPERIRHEQAATKAQAAFRGYLARRAFRTLKGIIRLQALGRGRLVRRQAIATLCCVQGIVKFQALVRGQSVRHSNIGTEVHEKLSARKFPDAKCSNSFGLQTSNQAEKLSKNVFVCTLLASSPTSMPLHLQYGPGEPNSAWDWLERWTKSHFWEPLTKPKKIIDSKSQKKRGTSQTVETDRSRPKRSVRKATSAKFENGSTQSTLESDKPKRNLRKVSSHPVDSVQEHPKNATEKTKSKLRKNLKSTSDASDQLEVKAEKPKQSLRKSSSAASDAPEQGTGDSLKKIKKDMAVTVSKQSDIETSLKPPAE--NELVDNVHDHTLADLQCVEN--NGKSENIPEANKD-----------------MSYKDNDISNDDQKTSQRRASLPGKHDYQENGLHNTPRLPSYMAATESAKAKLRALSSPRFGQDEADKNGITRRHSLPSSSTNGKLSSWSPRAQRLVQASGKGVFRSDRSLMSSRDGSE-KLLQPEWRR 578    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZMY9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8408068.1}))

HSP 1 Score: 359.762 bits (922), Expect = 4.504e-114
Identity = 256/604 (42.38%), Postives = 331/604 (54.80%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKSAAS-------------------------APNPRQMNMPILGTSASTKENLPIKKEEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS-IGSEIRER----EPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTG----SSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKS---DISE-GISNPVEKV--IEVSEKAESKPSDVE-ISQELPAEG-TDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSP KWIK VLFGKK SKS  S                         A  P  ++ P  G++     N  ++K  A   P+   VL S +   D    +     +D E+ R EQAA  AQAA RGY AR    +L+ I RLQAL RGHLVRRQAVATL  ++GI+K+QALVRG+RVR S IG E+R+      P       C    G   S RTE L    F  KL+SS P  MPL+L Y  EEPNS   WL  WTL +   P SQ K+ +         +  +VGT+  R + SV  + +   D+G   S P+SE+ K  L+KV   PV S+QEHPQN  +KV RN +KVS   +E S +A   +E+ K S+  SS+    D SE G S+  EK   + V+   +SK SDV+ I + L A+   D   D+HS A LQP E+                     + E + +++ E+  K    ++ N++ S RRAS PAK +     I STP +PSYMA T+SAKAKLR Q SP F QD+AEK    RRHSLPSS +GK  S  PR HKL+QAS KGG++ DRSL+SSRD  + +VIQA W+R
Sbjct:   76 MGKSPAKWIKTVLFGKKASKSNLSKERVVSKAANEKEEWISTEAPAADLAVGPPLISHPEPGSTEKNGGNSKLEKGIAADLPRDGVVLFSVNQDADTQGIKASDSPNDPERIRQEQAATKAQAAFRGYLARRAFRALKGIIRLQALVRGHLVRRQAVATLCCMQGIVKLQALVRGRRVRLSGIGLEVRQNCNLGNPLVAKRSSC---SGVNTSPRTEKLPANVFASKLLSSSPNVMPLRLWYCLEEPNSAGKWLECWTLSRFWKPISQPKKILDTKSKRKRGNFQAVGTEPGRPKHSVRSVPAPTVDSGSLHSTPKSEKPKRNLRKVLSHPVDSVQEHPQNELEKVKRNLRKVSNSTMEASDRADVETEKPKCSLRNSSRFPAPDASEQGTSDSAEKKKDLTVAVSKDSKQSDVDTIPKPLAADDPVDVLQDDHSTAELQPLESG-------------------GSDENIPMINGELSSKEDQTSNGNQETSKRRASFPAKQECTGNGIQSTPTLPSYMAPTKSAKAKLRGQGSPMFGQDEAEKNGFTRRHSLPSSTNGKLSSLLPRTHKLVQASGKGGIKSDRSLLSSRDGKE-KVIQAGWRR 656    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AT29 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 356.681 bits (914), Expect = 4.922e-114
Identity = 240/593 (40.47%), Postives = 322/593 (54.30%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKSAASAP-------------------------NPRQMNMPILGTSASTKENLPIKKEEATVS--PKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS-IGSEIREREPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGV---TGSSSL-SVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKSDISEGISNPVEKVIEVSEKAESKPSDVEISQELPAEGTDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGSSPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKWIK VLFGKK SKS  +                           +P  ++ P+  + A   EN     E    S  P  E VL S     D     N+    DS++  LE+AA + QAA RGY AR     L+ I RLQAL RGHLVRRQAVATL  V  I+K+QALVRGQ+VRRS IGS++ +++   ++D +CL SF    S + E LL  AFV KL+SS    +PL L Y P EPNS   WL RWT+  V G HS   + I +   T   S  +V  ++ R + SV R+ +++ D+   +S  ESE+ K   +KV+     S++EHPQN T+K + +                       H+  + +K DI  G++ P    +E S K+        ++ ++PA+    +L  HS   LQP +   +                    E++ LVD+ +  K+  I++E +K S RRASLPAK DY E  +H TPRVPSYMA TESAKAK R Q SP F QD+AEK  L RRHSLP+S +GK   SPR+ +L+QAS KGG+R DRSL+S   S+D + IQAEW+R
Sbjct:   33 MGKSPGKWIKSVLFGKKASKSNLAGGREISKSASEKVALVQAKEPVSDLGVHPPLISQPVYCSGAGIGEN----SENGVASRLPNDEVVLYSAKQDGDAQKTTNLGSPKDSKRIGLEEAATSVQAAFRGYLARRAFQVLKGIIRLQALIRGHLVRRQAVATLYCVNRIVKLQALVRGQKVRRSDIGSKVHKKQGLGKLDPKCLDSFETNTSNQVEKLLVNAFVCKLLSSSHTTVPLYLQYGPGEPNSAWEWLRRWTMSHVWG-HSSQPKIIDLKPQTKDGSFQTVEAEQGRPKRSVQRLPTANVDSVSDKSALESEKLKRNQRKVSNHTANSVKEHPQNETEKGVDD-----------------------HA--EKAKRDI--GLAVPGRSYVETSPKS--------LAADVPAD----ELHVHSAIDLQPKQINGRN-------------------EDIPLVDKSLSSKHDDISNEYQKTSRRRASLPAKQDYQENGLHKTPRVPSYMATTESAKAKFRGQLSPRFGQDEAEKNGLTRRHSLPTSANGKLSLSPRVQRLVQASGKGGIRSDRSLLS---STDEKAIQAEWRR 559    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YQM9 ((protein IQ-DOMAIN 31 isoform X1 {ECO:0000313|RefSeq:XP_010242390.1}))

HSP 1 Score: 352.443 bits (903), Expect = 3.019e-112
Identity = 250/599 (41.74%), Postives = 328/599 (54.76%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKS-------------------AASAP------NPRQMNMPILGTSASTKENLPIKKEEATVSPKAEPV-LPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS--IGSEIREREPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKET----IGVTGSSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKSDISE----GISNPVEKVIEVSEKAESKPSDVEIS-QELPAEGTDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKW+K +LFGKK SKS                   AA AP      +P  ++ P  GT      NL  + E+  V P    V LP     + E    +  P +D E+ R E+AA  AQAA RGY AR    +L  I RLQAL RGHLVRRQA+ATL  +RG++K+QALVRG+R R S  +    ++    K +D + L SFG      TE   + AFV K+++S   AMPL L Y  +EPNS  NWL+RWT  +   P  Q K+     + +   +  +  T+  R + SV R  S   DNG   S  ESE+ K  L+KVT  PV ++QEHPQN  +KV RN +KVS   VE   +    +E+ K S+ K+  S   E    G+    EK+ + +   ESK  +VE S + L  +G  S L+N                    PV + E +      E + L +EE+  K    ++EN+K S RRAS PAK DY E  + +TP +PSYMA TESAKAKLRAQ SP F  D AEK    RRHSLPSS +GK  S SPR  +L+QAS KGG+R D SL+SSRD ++ ++IQAEW+R
Sbjct:    1 MGKSPGKWLKTLLFGKKTSKSNLSKGREVSRTGNEKEACIAAKAPIADSAVDPPLVSHPAPGTIDRRGGNL--EPEKGVVLPHDGDVSLPGSQDKDQERNTGSGGP-NDPERIRQEKAATKAQAAFRGYLARRAFRALRGIIRLQALVRGHLVRRQALATLHCMRGVVKLQALVRGRRARLSDTVLKVHKKYRLVKALDSKQLESFG-----WTEKPSENAFVCKILASSSVAMPLHLQYGLDEPNSAWNWLDRWTSFRFWRPLPQPKKVADSKLQIKQVNVQNAETEPGRQKRSVRRFGSGSVDNGPTNSNSESEKPKRSLRKVTSHPVDAVQEHPQNEVEKVKRNLRKVSNSTVEVPDRIEVENEKPKRSVRKAPSSMAPEVSDQGMRESAEKMKKDTMVPESKQLNVETSPKPLTPDGPTSVLNNDH------------------PVVELELLQSNGKDENVHLTNEELISKEDPASNENQKTSRRRASFPAKQDYPENGLQNTPSLPSYMATTESAKAKLRAQGSPRFGHDGAEKNGFTRRHSLPSSTNGKLSSVSPRTQRLVQASGKGGVRSDGSLLSSRDGNE-KIIQAEWRR 572    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YTE2 ((protein IQ-DOMAIN 31 isoform X2 {ECO:0000313|RefSeq:XP_010242391.1}))

HSP 1 Score: 350.903 bits (899), Expect = 1.281e-111
Identity = 250/599 (41.74%), Postives = 326/599 (54.42%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKS-------------------AASAP------NPRQMNMPILGTSASTKENLPIKKEEATVSPKAEPV-LPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS--IGSEIREREPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKET----IGVTGSSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKSDISE----GISNPVEKVIEVSEKAESKPSDVEIS-QELPAEGTDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKW+K +LFGKK SKS                   AA AP      +P  ++ P  GT      NL  + E+  V P    V LP     + E    +  P +D E+ R E+AA  AQAA RGY AR    +L  I RLQAL RGHLVRRQA+ATL  +RG++K+QALVRG+R R S  +    ++    K +D + L SFG      TE   + AFV K+++S   AMPL L Y  +EPNS  NWL+RWT  +   P  Q K+     + +   +  +  T+  R + SV R  S   DNG   S  ESE+ K  L+KVT  PV ++QEHPQN  +KV RN +KVS   VE   +    +E+ K S+ K+  S   E    G+    EK+ + +   ESK  +VE S + L  +G  S L+N                    PV + E +      E + L +EE+  K    ++EN+K S RRAS PAK DY E  + +TP +PSYMA TESAKAKLRAQ SP F  D AEK    RRHSLPSS +GK  S SPR  +L+QAS KGG+R D SL+SSR   D ++IQAEW+R
Sbjct:    1 MGKSPGKWLKTLLFGKKTSKSNLSKGREVSRTGNEKEACIAAKAPIADSAVDPPLVSHPAPGTIDRRGGNL--EPEKGVVLPHDGDVSLPGSQDKDQERNTGSGGP-NDPERIRQEKAATKAQAAFRGYLARRAFRALRGIIRLQALVRGHLVRRQALATLHCMRGVVKLQALVRGRRARLSDTVLKVHKKYRLVKALDSKQLESFG-----WTEKPSENAFVCKILASSSVAMPLHLQYGLDEPNSAWNWLDRWTSFRFWRPLPQPKKVADSKLQIKQVNVQNAETEPGRQKRSVRRFGSGSVDNGPTNSNSESEKPKRSLRKVTSHPVDAVQEHPQNEVEKVKRNLRKVSNSTVEVPDRIEVENEKPKRSVRKAPSSMAPEVSDQGMRESAEKMKKDTMVPESKQLNVETSPKPLTPDGPTSVLNNDH------------------PVVELELLQSNGKDENVHLTNEELISKEDPASNENQKTSRRRASFPAKQDYPENGLQNTPSLPSYMATTESAKAKLRAQGSPRFGHDGAEKNGFTRRHSLPSSTNGKLSSVSPRTQRLVQASGKGGVRSDGSLLSSR---DEKIIQAEWRR 570    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BAX7 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 347.821 bits (891), Expect = 3.179e-110
Identity = 246/597 (41.21%), Postives = 328/597 (54.94%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFG---------------KKGSKSAA--SAPNPRQ--------MNMPILGTSASTKENLPIKKEEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGY----------QAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRS-IGSEIRER-EPHKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTG----SSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSK--SDISE-GISNPVEKVIEVSEKAESKPSDVEISQELPAEG-TDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNS-GKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSS 550
            MGKSPGKWIK +LFG               K  SK  A   A  P           ++P+  T+A        +K  A+  P    +L S   + D     N+    D E+ R EQAA  AQAA RGY          +AR    +L+ I RLQAL RG LVRRQA+ATL  V+GI+K QALVRG+ VR S IG+E+ E+    K +D +C +SFG   S + E L K  FV  L++S P +MPL L Y P EPNS  +WL RWT      P ++ K+ I         +S +V TD++R + SV + TS+  +NG  +S  ES++ K  L+KV+  PV S+QEHP+N T+K     +K  K   + S +    +E+ KHS+ KSS   SD  E G  + ++K+ +      SK SD+E S + PAE      + +H+ A LQ  E     K E  P   K+                 +  K+  I+++++K   RRASLP KHDY E  +H+TPR+PSYMAATESAKAKLRA  SP F QD+A+K  + RRHSLPSS++ GK  S SPR  +L+QAS KG  R DRSLMSSRD S
Sbjct:   14 MGKSPGKWIKGLLFGKKSSKSNLSKGREISKHASKGDALVCAKVPASDLTVDAPLTSLPVPLTTARNGVVSDSEKGTASRLPNDGVILSSSKENGDTETIMNLGLSKDPERIRHEQAATKAQAAFRGYLFTDASLISLKARRAFRTLKGIIRLQALGRGRLVRRQAIATLCCVQGIVKFQALVRGRSVRHSNIGTEVHEKLSARKFLDAKCSNSFGLQTSNQAEKLSKNVFVCTLLASSPTSMPLHLQYGPGEPNSAWDWLERWTKSHFWEPLTKPKKIIDSKSQKKRGTSQTVETDRSRPKRSVRKATSAKFENGSTQSTLESDKPKCNLRKVSSHPVDSVQEHPKNATEKTKSKLRKNLKSTSDASDQLEVKAEKPKHSLRKSSSAASDAPEQGTGDSLKKIKKDMAVTVSKQSDIETSLKPPAENELVDDVHDHTLADLQCVEN--NGKSENIPEANKD-----------------MSYKDNDISNDDQKTXQRRASLPGKHDYQENGLHNTPRLPSYMAATESAKAKLRALGSPRFGQDEADKNGITRRHSLPSSSTNGKLSSWSPRAQRLVQASGKGVFRSDRSLMSSRDGS 591    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8Q610 ((protein IQ-DOMAIN 31-like {ECO:0000313|RefSeq:XP_010256684.1, ECO:0000313|RefSeq:XP_019053486.1}))

HSP 1 Score: 330.102 bits (845), Expect = 1.375e-103
Identity = 249/602 (41.36%), Postives = 328/602 (54.49%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFGKKGSKSAAS-------APNPRQMNM----PILGTSAS---TKENLP---------IKKEEATVSPKAEPVLPSPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRSIGSEIREREPH---KEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTGSSSL-------SVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGKSSKS---DISE-GISNPVEKVIEVSEKAESKPSDVEISQELPAEGTDSKLDNHSYAPLQPS-ETPVQQ--KEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            M KSPGKWIK +LFGKK SKS  S         N ++  +    PI G +        ++P         ++ E+  VS        S     D+         +D E+ RLE+AA  AQAA RGY AR    +L  I RLQAL RGHLVRRQA+ATL  ++GI+K+QALVRG+RVR  + + +R    +   K +D +   SFG      TE     AFV KL+SS  A MPL + Y+ EEPNS  +WL+RWT  +   P  Q K    VT S S        +V T+  + + SV R +S++ DNG   S  ESE+ K  L+KVT  PV S+QEHPQN  +KV RN +KVS  ++E S      +E+ K S+ K+  S   ++SE   S+  EK  + +  A SK  DVE S   P   T   L N+      P  E P+Q   K+E  PV   E       KE+ T             ++E +K S RRAS P K +Y E  + +TP +PSYMA TESAKAKLR Q+SP F  D A+K    RRHSLPSS +GK  S SPR  +L+Q S KGG+R D+SL SSRD ++ R++QAEW+R
Sbjct:    1 MRKSPGKWIKTLLFGKKTSKSNLSKGREISRTANDKEAWVAPKEPIAGLTVDPPLVSHSVPATTDRHGGNLESEKGVVSNCQLDEDVSLSGTQDKYGSSGSHAPNDPERIRLEKAATKAQAAFRGYLARRAFRALRGIIRLQALVRGHLVRRQAIATLHCIQGIVKLQALVRGRRVRL-LDTSLRVHRKYSSTKALDAKWSGSFG-----WTEKPSVNAFVCKLLSSSSAVMPLCIQYDLEEPNSAWSWLHRWTSSRFWIPLPQPKV---VTDSKSQAKQGNTQTVETELGKPKRSVRRFSSANVDNGSINSTSESEKPKRNLRKVTSHPVDSVQEHPQNELEKVKRNLRKVSNSILEVSDCVEVENEKPKRSLRKAPISPAPNVSEQDTSDCAEKTNKDATVAVSKQLDVETS---PKPVTPDGLANNVLIDDHPVIELPLQSNVKDENVPVTNGESTF----KEDTT-------------SNEKQKTSRRRASFPVKQEYPENGLPNTPSLPSYMATTESAKAKLRTQSSPRFSHDGADKNGFTRRHSLPSSTNGKLISVSPRTQRLVQTSGKGGIRSDKSLFSSRDGNE-RIVQAEWRR 572    
BLAST of XM_017368438.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C950 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 319.701 bits (818), Expect = 1.600e-99
Identity = 233/598 (38.96%), Postives = 327/598 (54.68%), Query Frame = 0
 
Query:    1 MGKSPGKWIKKVLFG-------------KKGSK-----SAASAPNPRQMNMPI-----LGTSASTKENLPIKKEEATVSPKAEPVLP-SPDIHNDENAPRNISPIDDSEKRRLEQAAITAQAAIRGYQAREKLHSLEAITRLQALARGHLVRRQAVATLQSVRGIIKIQALVRGQRVRRSIGSEIREREP--HKEIDDQCLSSFGNIGSQRTEMLLKTAFVGKLISSMPAAMPLQLCYEPEEPNSLSNWLNRWTLLQVLGPHSQFKETIGVTG----SSSLSVGTDKARSRGSVSRITSSDNDNGLKRSVPESERNKVKLKKVTKDPVKSIQEHPQNGTKKVLRNPKKVSKPLVETSVKAVAGSERRKHSIGK---SSKSDISE-GISNPVEKVIEVSEKAESKPSDVEISQELPA--EGTDSKLDNHSYAPLQPSETPVQQKEEVTPVQQKEEVTPVQTKEELTLVDEEIKKKNALINDENKKASMRRASLPAKHDYLEKDIHSTPRVPSYMAATESAKAKLRAQASPNFDQDDAEKYALRRRHSLPSSNSGKFGS-SPRMHKLIQASIKGGMRGDRSLMSSRDSSDSRVIQAEWKR 561
            MGKSPGKWIK +LFG             K G++     +A +A     ++ P+     L T    +E L      A +  +   ++P + D    E    N+    D E+ R EQAA  AQAA RGY AR    +L+ I RLQAL RGHLVRRQAV+TL  + GI+K+QA+ RG+++R S    + +++    K ++ + +   G   S R   L    F+ KL++S P AMPL   Y+  EPNS+ NWL  W+      P SQ K+  G        +S +V T+  R + S+ R+ +++ DN   +S  E E+ K  L+KV+  P  S+QEHPQN  +KV R+ +KV  P+ E +V+    +E+ K+S+GK   SS  D+SE  +S+  EK+ + +    SK  D+E + EL    E  D   ++ +   LQP E   + K+E  PV   E    +  KE+LT              +EN+K S R+AS  AK +  E  + S P +PSYMAATESAKAKLR Q SP F QD AEK+ L RRHSLPSS + K    SPR  + +QAS KGG R DRSL+SS D  + +VIQA W+R
Sbjct:    1 MGKSPGKWIKTLLFGKKSSKSNFSKGREKVGNEKEVWVAAKAAEADLGLDPPVASDLALNTIDKNEEKLEENSASADLPLEGGTLVPVNRDADTQETTQPNVP--KDPERIRQEQAATKAQAAFRGYLARRAFLALKGIIRLQALVRGHLVRRQAVSTLHCMLGIVKLQAVARGRKIRHSDTGLLVQKKCILVKPLESKLVDPVGVNRSARIAKLSTNTFICKLLASSPTAMPLHFQYDSAEPNSVLNWLECWSASLFSKPVSQPKKVPGSKSQKKQGNSQTVDTETGRLKHSIRRVPATNVDNISTKSTTEFEKPKRNLRKVSSHPADSVQEHPQNELEKVKRSLRKVHNPITEGTVQPEVNNEKSKYSLGKALSSSVQDVSEQSLSDSTEKMKKETTVTVSKLPDIETAPELLVVDEAIDLLPNDQTAVKLQPLEN--RGKDESIPVTNGE----LNPKEDLT-------------GNENQK-SCRKASPSAKQECAENGLQSRPTLPSYMAATESAKAKLRRQGSPRFGQDGAEKHNLTRRHSLPSSTNSKMSQLSPRAQRPVQASGKGGNRSDRSLLSSGD-GNVKVIQAGWRR 575    
Match NameStatsDescription
A0A6L5BC34E-Value: 0.000e+0, PID: 73.40DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A5B6YRG2E-Value: 1.318e-127, PID: 44.13DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
D7TND0E-Value: 2.195e-115, PID: 42.00DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A834ZMY9E-Value: 4.504e-114, PID: 42.38(Uncharacterized protein {ECO:0000313|EMBL:KAF8408... [more]
A0A5J5AT29E-Value: 4.922e-114, PID: 40.47DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A1U7YQM9E-Value: 3.019e-112, PID: 41.74(protein IQ-DOMAIN 31 isoform X1 {ECO:0000313|RefS... [more]
A0A1U7YTE2E-Value: 1.281e-111, PID: 41.74(protein IQ-DOMAIN 31 isoform X2 {ECO:0000313|RefS... [more]
A5BAX7E-Value: 3.179e-110, PID: 41.21DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A1U8Q610E-Value: 1.375e-103, PID: 41.36(protein IQ-DOMAIN 31-like {ECO:0000313|RefSeq:XP_... [more]
A0A5B7C950E-Value: 1.600e-99, PID: 38.96DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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