Resource Type:
Polypeptide
Name:
XM_017371302.1
Identifier:
XM_017371302.1-protein
Sequence:
MEGAFNFFFLFCLCLLLLPYPISSLPLCTDLGAPFSPQKPLTFCPYSGNV
CCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRS
RPVPVLCNSTGSAGSSSKQATASYCSSVWDTCQDISIKNSPFAPSLQGAG
TPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPA
PKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESL
ELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNP
GCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQA
ETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHN
FAQNKNSLLGKVMRIDVDNLPTESNADLWGNYSIPRDNPYSKDKEAQPEI
WAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEG
PLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRS
TTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNC
STVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEV
KTSSPPNTPPSSSNGHHTSIQYLFSKLSLISISLLLAFSL
Sequence Length:
690
Sequence Checksum:
8fdde29607abc7aa1eaf17d574d92fbe
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371302.1, derives from mRNA, XM_017371302.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CBP7 ((Putative HIPL1 protein-like isoform X1 {ECO:0000313|EMBL:MPA78300.1}))
HSP 1 Score: 983.015 bits (2540), Expect = 0.000e+0
Identity = 462/630 (73.33%), Postives = 537/630 (85.24%), Query Frame = 0
Match: A0A5B7CBP7 ((Putative HIPL1 protein-like isoform X1 {ECO:0000313|EMBL:MPA78300.1}))
HSP 1 Score: 983.015 bits (2540), Expect = 0.000e+0
Identity = 462/630 (73.33%), Postives = 537/630 (85.24%), Query Frame = 0
Query: 29 TDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSS-SKQATASYCSSVWDTCQDISIKNSPFAPSLQG-AGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPTE---SNADLWGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTS 653
TDL AP P+ PL FCPY+G +CC++AKD QL+KQ++AM ISD++CAS +KSILCA CD FSAEL+ S RPVP+LCNST SA SS S Q +CS+VWDTCQ++SI NSPFAPSLQG AG PQNST S L DLWQSKSDFC +FGG+S D SLCF G+P+SLN +ETL PKG+CLEK+GNG+YLNMVAHPDGSNRAFFSNQPGKIWLA +PEQGSGE L LDES PFVDLTDQ+H+DTSFGMMGMAFHPNFA NGRFFASFNCDKV++PGCS RC+CNSDV CDPSK+ SSS A PCQYH VVAE++ANGTAS+PS A++AKP+EVRRIFT+GLP ++ HGGQ+LF PAD Y+YIM GDGG KG+ +NFAQNK SLLGK+MR+DVDN+P+ SN LWGNYSIP+DNPYS+DKE QPEIWA GLRNPWRCSFD +RPSYF+CAD GQDQYEEVDIITKGGNYGW YEGP+L+ +++ N T D INPIFPVVGYSHSDVNKKEGSAAISGG+FYRS TDPCMYGSY+Y DLY +W AAETP NSGNF+ ++PFSCA+DSP+ CS+VPNS L ALGYIFSFG+DN KDV+ILTS+GVYR+V+PSRC++TCSKE T+
Sbjct: 28 TDLKAPLIPKVPLAFCPYNGRICCNTAKDSQLKKQFQAMKISDSSCASVMKSILCAMCDQFSAELFKVQSVPRPVPILCNSTISANSSLSNQVATDFCSAVWDTCQNVSILNSPFAPSLQGRAGVPQNSTPSMLADLWQSKSDFCLAFGGASDDGSLCFNGEPVSLNDTETLSPPKGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQPGKIWLATIPEQGSGEKLGLDESIPFVDLTDQVHYDTSFGMMGMAFHPNFAHNGRFFASFNCDKVTSPGCSGRCSCNSDVSCDPSKIGSSSAAQ-PCQYHNVVAEFTANGTASEPSTAKSAKPSEVRRIFTMGLPFTSDHGGQILFGPADGYLYIMMGDGGSKGDPYNFAQNKKSLLGKIMRLDVDNMPSAADLSNLGLWGNYSIPQDNPYSEDKELQPEIWALGLRNPWRCSFDSKRPSYFMCADVGQDQYEEVDIITKGGNYGWRVYEGPILFSPQETPGGNTTADSINPIFPVVGYSHSDVNKKEGSAAISGGFFYRSVTDPCMYGSYLYGDLYGSAIWAAAETPKNSGNFTTATVPFSCARDSPIECSSVPNSPLPALGYIFSFGQDNRKDVFILTSSGVYRVVRPSRCNYTCSKENVTA 656
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AS01 (GSDH domain-containing protein {ECO:0000259|Pfam:PF07995})
HSP 1 Score: 972.615 bits (2513), Expect = 0.000e+0
Identity = 461/631 (73.06%), Postives = 532/631 (84.31%), Query Frame = 0
Match: A0A5J5AS01 (GSDH domain-containing protein {ECO:0000259|Pfam:PF07995})
HSP 1 Score: 972.615 bits (2513), Expect = 0.000e+0
Identity = 461/631 (73.06%), Postives = 532/631 (84.31%), Query Frame = 0
Query: 28 CTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSS-SKQATASYCSSVWDTCQDISIKNSPFAPSLQG-AGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPTE---SNADLWGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTS 653
CTDL AP +P+ PL FCPY+G VCC+S KD QLQKQ++AM ISD+ CAS +KSILCATCD FSAEL+ RPVP+LCNST SA SS S + + +CS+VWDTCQ++SI NSPFAPSLQG AG PQNSTSS L DLWQSKSDFC +FGG S D SLCF GK ISLN SE L PKG+CLEK+GNG+YLNMVAHPDGSNRAFFSNQPGKIWLA +PEQGSGE L LDES PFVDLTD+++FDT+FGMMGMAFHPNFA NGRFFASFNCDKV +PGCS RC+CNSDV CDPSK+ SSS A PCQYH+VVAE++ANGTAS+PS A+TAKPTEVRRIFT+GLP + +HGGQ+LF PAD Y+YIM GDGG KG+ +NFAQNK SLLGK+MR+DVD + +E SN LWGNYSIP+DNPYS+D E QPEIWA GLRNPWRCSFD ERPSYF+CAD GQDQYEEVDIITKGGNYGW YEGP L+ +++ N + D INPIFPVVGYSHSDVN+KEGSAAISGG+FYRS TDPCM+GSY+Y DLYA +W AAE+P SGNF+ ++PFSCA+DSP+ C +VPNS L ALGYIFSFG+DN KDV+ILTSTGVYR+V+PSRC++TCSKE T+
Sbjct: 27 CTDLRAPLTPKVPLAFCPYNGRVCCNSTKDSQLQKQFQAMKISDSNCASVMKSILCATCDQFSAELFKVELGPRPVPILCNSTISANSSLSNRGVSDFCSTVWDTCQNVSILNSPFAPSLQGRAGVPQNSTSSKLEDLWQSKSDFCLAFGGVSDDGSLCFNGKAISLNDSENLLPPKGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQPGKIWLATIPEQGSGEMLGLDESIPFVDLTDEVYFDTNFGMMGMAFHPNFAHNGRFFASFNCDKVKSPGCSGRCSCNSDVNCDPSKIGSSSAAQ-PCQYHIVVAEFTANGTASEPSSAKTAKPTEVRRIFTMGLPFTANHGGQILFGPADGYLYIMMGDGGSKGDPYNFAQNKKSLLGKIMRLDVDKILSEAELSNLGLWGNYSIPQDNPYSEDNEVQPEIWALGLRNPWRCSFDAERPSYFMCADVGQDQYEEVDIITKGGNYGWRVYEGPSLFAPQETPGGNTSADSINPIFPVVGYSHSDVNRKEGSAAISGGFFYRSMTDPCMFGSYLYGDLYASAIWAAAESPEKSGNFTTRTVPFSCARDSPIECGSVPNSPLPALGYIFSFGQDNRKDVFILTSTGVYRVVRPSRCNYTCSKENVTT 656
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TW67 (GSDH domain-containing protein {ECO:0000259|Pfam:PF07995})
HSP 1 Score: 949.503 bits (2453), Expect = 0.000e+0
Identity = 441/640 (68.91%), Postives = 536/640 (83.75%), Query Frame = 0
Match: A0A068TW67 (GSDH domain-containing protein {ECO:0000259|Pfam:PF07995})
HSP 1 Score: 949.503 bits (2453), Expect = 0.000e+0
Identity = 441/640 (68.91%), Postives = 536/640 (83.75%), Query Frame = 0
Query: 19 PYPISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSSSK-QATASYCSSVWDTCQDISIKNSPFAPSLQ-GAGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPTES---NADLWGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTS 653
P+P S+LPLCTDL AP +P+KPL FCPY+G++CCDS+KDLQLQK+++AMN++D ACAS VKSILCATCD FSA+L+ RPVPVLCNST GSSSK Q S+CS+VWD CQ+ISI +SPFAPSL+ PQNST S LTDLWQSK++FC++FGG S ++S+CF GK +SL+K+ETL P+GMCLEKVG +YLNM AHPDGSNRAFFS+QPG++WLA +PEQ SGE+L LD SSPFVDLTD+++FDT FGMMGMAFHPNF+QNGRFFAS+NCDK +P C+ RCACNSDVGCDPSK+ SS G PCQ ++VVAE+SANGTAS+PS A+ A P EVRRIFT+GLP ++HGGQ+LF P D Y+Y M GDGG KG+ +NFAQNK SLLGK++R+DV+N+P++ + LWGNYS+P DNP+S+DKE +PEIWA GLR+PWRCSFDVERPSYF+CADTG+DQYEEVDIITKGGNYGW +EGP+ + +Q+ N ++D INPIFPVVGYSHSDVNKKEGSAAISGGY YRS TDPC+YGSY+Y DLYA N+W AAE P NSGNFS T IPF+CA DSP+ CS+VPNS L ALGY+FSFG+DN DV+ILT +GVYR+V+PSRC++TCSKE + +
Sbjct: 18 PHPSSTLPLCTDLRAPVTPKKPLAFCPYNGSLCCDSSKDLQLQKRFDAMNVTDAACASAVKSILCATCDQFSADLFEVKLGPRPVPVLCNSTTDGGSSSKSQTDGSFCSNVWDVCQNISILDSPFAPSLKTKTEVPQNSTESKLTDLWQSKTEFCNAFGGVSNEDSICFSGKQVSLDKTETLLPPRGMCLEKVGEKSYLNMAAHPDGSNRAFFSDQPGRVWLATIPEQDSGEALGLDVSSPFVDLTDEVYFDTKFGMMGMAFHPNFSQNGRFFASYNCDKTKSPDCTGRCACNSDVGCDPSKIGSSEGTQ-PCQDYVVVAEFSANGTASNPSMAKNANPFEVRRIFTMGLPFGSNHGGQILFGPEDGYLYYMMGDGGSKGDPYNFAQNKKSLLGKILRLDVNNIPSQEEIVDLGLWGNYSVPHDNPFSEDKELEPEIWALGLRDPWRCSFDVERPSYFLCADTGEDQYEEVDIITKGGNYGWRVFEGPIPFQPQQTPGGNTSIDSINPIFPVVGYSHSDVNKKEGSAAISGGYVYRSKTDPCLYGSYLYGDLYAKNIWAAAENPKNSGNFSTTDIPFTCAADSPLPCSSVPNSPLPALGYVFSFGQDNRNDVFILTQSGVYRVVRPSRCNYTCSKEKEVA 656
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UYR6 ((HIPL1 protein-like isoform X1 {ECO:0000313|RefSeq:XP_027095650.1}))
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 440/640 (68.75%), Postives = 536/640 (83.75%), Query Frame = 0
Match: A0A6P6UYR6 ((HIPL1 protein-like isoform X1 {ECO:0000313|RefSeq:XP_027095650.1}))
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 440/640 (68.75%), Postives = 536/640 (83.75%), Query Frame = 0
Query: 19 PYPISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSSSK-QATASYCSSVWDTCQDISIKNSPFAPSLQ-GAGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPTES---NADLWGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTS 653
P+P S+LPLCTDL AP +P+KPL FCPY+G++CCDS++DLQLQK+++AMN++D ACAS VKSILCATCD FSA+L+ RPVPVLCNST GSSSK Q S+CS+VWD CQ+ISI +SPFAPSL+ PQNST S LTDLWQSK++FC++FGG S ++S+CF GK +SL+K+ETL P+GMCLEKVG +YLNM AHPDGSNRAFFS+QPG++WLA +PEQ SGE+L LD SSPFVDLTD+++FDT FGMMGMAFHPNF+QNGRFFAS+NCDK +P C+ RCACNSDVGCDPSK+ SS G PCQ ++VVAE+SANGTAS+PS A+ A P EVRRIFT+GLP ++HGGQ+LF P D Y+Y M GDGG KG+ +NFAQNK SLLGK++R+DV+N+P++ + LWGNYS+P DNP+S+DKE +PEIWA GLR+PWRCSFDVERPSYF+CADTG+DQYEEVDIITKGGNYGW +EGP+ + +Q+ N ++D INPIFPVVGYSHSDVNKKEGSAAISGGY YRS TDPC+YGSY+Y DLYA N+W AAE P NSGNFS T IPF+CA DSP+ CS+VPNS L ALGY+FSFG+DN DV+ILT +GVYR+V+PSRC++TCSKE + +
Sbjct: 18 PHPSSTLPLCTDLRAPVTPKKPLAFCPYNGSLCCDSSEDLQLQKRFDAMNVTDAACASAVKSILCATCDQFSADLFEVKLGPRPVPVLCNSTTDGGSSSKSQTDGSFCSNVWDVCQNISILDSPFAPSLKTKTEVPQNSTESKLTDLWQSKTEFCNAFGGVSNEDSICFSGKQVSLDKTETLLPPRGMCLEKVGEKSYLNMAAHPDGSNRAFFSDQPGRVWLATIPEQDSGEALGLDVSSPFVDLTDEVYFDTKFGMMGMAFHPNFSQNGRFFASYNCDKTKSPDCTGRCACNSDVGCDPSKIGSSEGTQ-PCQDYVVVAEFSANGTASNPSMAKNANPFEVRRIFTMGLPFGSNHGGQILFGPEDGYLYYMMGDGGSKGDPYNFAQNKKSLLGKILRLDVNNIPSQEEIVDLGLWGNYSVPHDNPFSEDKELEPEIWALGLRDPWRCSFDVERPSYFLCADTGEDQYEEVDIITKGGNYGWRVFEGPIPFQPQQTPGGNTSIDSINPIFPVVGYSHSDVNKKEGSAAISGGYVYRSKTDPCLYGSYLYGDLYAKNIWAAAENPKNSGNFSTTDIPFTCAADSPLPCSSVPNSPLPALGYVFSFGQDNRNDVFILTQSGVYRVVRPSRCNYTCSKEKEVA 656
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KIM5 ((Hipl1 protein {ECO:0000313|EMBL:OIT29205.1}))
HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0
Identity = 452/672 (67.26%), Postives = 534/672 (79.46%), Query Frame = 0
Match: A0A314KIM5 ((Hipl1 protein {ECO:0000313|EMBL:OIT29205.1}))
HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0
Identity = 452/672 (67.26%), Postives = 534/672 (79.46%), Query Frame = 0
Query: 1 MEGAFNFFFLFCLCLLLLPY--PISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSSSKQATASYCSSVWDTCQDISIKNSPFAPSLQ-GAGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPT-ESNADL--WGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTSSPPNTPPSSSNGH 666
M FN F F +CLLL + P SSLPLCTDL AP PQKPL FCPY+G VCCDS+KDLQLQK +E MNI+DTAC+S VKSILC+TCD FSAEL+ S RPVPVLCNST ++ +S +CSSVWDTCQ+I I NSPFAPSL+ AG QNS SS LTD WQSK+DFC++FGG+S +SLCF GK +SL K+ETL P GMCLEK+ +GAYLNMV HPDGSNR FFSNQPGKIWLA +PEQ SGE++ELDESSPF DLTD ++ D FGMMGMAFHPNF +NGRFFASFNCDK +P C+ RCACNSDVGCDPSK+ +S PCQYH VVAE+S NGTA +PS+AE AKP+EVRRIFT+GLP + +HGGQ+LF P D Y+YIM GDGG KG+ NFAQNK SLLGK+MR+D+DN+P+ E +DL WGNYS+PRDNPYS+DK+ QPEIWA GLR+PWRCSFD ERPSYF+CAD GQDQYEEVDIIT+GGNYGW YEGP + + + D ++PIFPV+GY+HSD+NK+ GSAAISGGY YRS TDPC+YGSY+Y DLYA N W A E P NSGNF+ IPFSCA DSP+NCS+VPNS L ALGYIFSFG+DN KD ++LTSTG+YR+V+PSRC++TCSKE ++ P + S+GH
Sbjct: 1 MNNHFNLLFSF-ICLLLYSFFNPSSSLPLCTDLRAPAIPQKPLAFCPYNGRVCCDSSKDLQLQKLFEGMNITDTACSSAVKSILCSTCDQFSAELFKVKSGPRPVPVLCNSTATSENS-------FCSSVWDTCQNIPITNSPFAPSLKTKAGESQNSNSSLLTDFWQSKTDFCEAFGGNSDKDSLCFNGKQVSLKKNETLQPPNGMCLEKIADGAYLNMVPHPDGSNRVFFSNQPGKIWLATIPEQDSGEAMELDESSPFADLTDDVYLDARFGMMGMAFHPNFDKNGRFFASFNCDKAKSPRCAGRCACNSDVGCDPSKI-NSDDNKQPCQYHTVVAEFSVNGTAPNPSKAEKAKPSEVRRIFTMGLPFTANHGGQILFGPEDGYLYIMMGDGGSKGDSFNFAQNKKSLLGKIMRVDIDNIPSQEEISDLGHWGNYSVPRDNPYSQDKDLQPEIWALGLRDPWRCSFDSERPSYFICADVGQDQYEEVDIITRGGNYGWSMYEGPFRFKNASAD------DSMDPIFPVLGYNHSDINKEVGSAAISGGYVYRSKTDPCIYGSYLYGDLYAKNFWAAQENPYNSGNFTTRGIPFSCAHDSPLNCSSVPNSPLPALGYIFSFGQDNRKDTHVLTSTGIYRVVRPSRCNYTCSKETVRAAESPGPSAPSDGH 657
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4BUU1 ((HIPL1 protein-like {ECO:0000313|RefSeq:XP_016492593.1}))
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 448/671 (66.77%), Postives = 531/671 (79.14%), Query Frame = 0
Match: A0A1S4BUU1 ((HIPL1 protein-like {ECO:0000313|RefSeq:XP_016492593.1}))
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 448/671 (66.77%), Postives = 531/671 (79.14%), Query Frame = 0
Query: 1 MEGAFNFFFLFCLCLLL-LPYPISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSSSKQATASYCSSVWDTCQDISIKNSPFAPSLQ-GAGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPT-ESNADL--WGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTSSPPNTPPSSSNGH 666
M FN F F LL P SSLPLCTDL AP +P+KPL FCPY+G VCCDS+KDLQLQK +E MNI+DTAC+S VKSILC+TCD FSAEL+ S RPVP+LCNST ++ S+CSSVWDTCQ+I I NSPFAPSL+ AG QNS SS LTDLWQSKSDFC++FGG+ +SLCF G+ + L K+ETL P GMCLEK+ +GAY+NMV HPDGSN FFSNQPGKIWLA +PEQ SGE++ELDESSPF DLTD+++ D FGMMGMAFHPNFA+NGRFFASFNCDK +P C+ RCACNSDVGCDPSK+ +S PCQYH VVAE+S NGTA +PS+AE AKP+EVRRIFT+GLP + +HGGQ+LF P D Y+YIM GDGG KG+ +NFAQNK SLLGK+MR+D+DN+P+ E +DL WGNYS+PRDNPYS+DK+ QPEIWA GLR+PWRCSFD ERPSYF+CAD GQDQYEEVDIIT+GGNYGW YEGP + + + D ++PIFPV+GY+HSD+NK+ GSAAISGGY YRS TDPC+YGSY+Y DLYA N W A E P NSGNF+ IPFSCA DSP+NCS+VPNS L ALGYIFSFG+DN KD Y+LTSTGVYR+V+PSRC++TCSKE ++ P + S+GH
Sbjct: 1 MNNHFNLLFSFIYLLLYSFINPSSSLPLCTDLRAPVTPKKPLAFCPYNGRVCCDSSKDLQLQKLFEGMNITDTACSSAVKSILCSTCDQFSAELFKVKSGPRPVPILCNSTATS-------EKSFCSSVWDTCQNIPITNSPFAPSLKTKAGESQNSNSSLLTDLWQSKSDFCEAFGGNFDKDSLCFSGEQVLLKKNETLQPPNGMCLEKIADGAYINMVPHPDGSNSVFFSNQPGKIWLATIPEQDSGEAMELDESSPFADLTDEVYLDARFGMMGMAFHPNFAKNGRFFASFNCDKAKSPRCAGRCACNSDVGCDPSKI-NSDDNKQPCQYHNVVAEFSVNGTAPNPSKAEKAKPSEVRRIFTMGLPFTANHGGQILFGPEDGYLYIMMGDGGSKGDSYNFAQNKKSLLGKIMRVDIDNIPSQEEISDLGHWGNYSVPRDNPYSQDKDLQPEIWALGLRDPWRCSFDSERPSYFICADVGQDQYEEVDIITRGGNYGWSMYEGPFRFKNASAD------DSMDPIFPVLGYNHSDINKEVGSAAISGGYVYRSKTDPCIYGSYLYGDLYAKNFWAAQENPYNSGNFTTRGIPFSCAHDSPLNCSSVPNSPLPALGYIFSFGQDNRKDTYVLTSTGVYRVVRPSRCNYTCSKETVRAAERPGPSAPSDGH 657
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XV63 ((HIPL1 protein-like {ECO:0000313|RefSeq:XP_016443760.1}))
HSP 1 Score: 934.865 bits (2415), Expect = 0.000e+0
Identity = 450/673 (66.86%), Postives = 532/673 (79.05%), Query Frame = 0
Match: A0A1S3XV63 ((HIPL1 protein-like {ECO:0000313|RefSeq:XP_016443760.1}))
HSP 1 Score: 934.865 bits (2415), Expect = 0.000e+0
Identity = 450/673 (66.86%), Postives = 532/673 (79.05%), Query Frame = 0
Query: 1 MEGAFNFFFLFCLCLLLLPY--PISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISD-TACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSSSKQATASYCSSVWDTCQDISIKNSPFAPSLQ-GAGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPT-ESNADL--WGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTSSPPNTPPSSSNGH 666
M N F F +CLLL + P SSLPLCTDL AP PQKPL FCPY+G VCCDS+KDLQLQK +E MNI+D TAC+S VKSILC+TCD FSAEL+ SR RPVPVLCNST ++ +S +CSSVWD+CQ+I I NSPFAPSL+ AG QNS SS LTD WQSK+DFC++FGG+S +SLCF G+ + L K+ETL P GMCLEK+ +GAYLNMV HPDGSNRAFFSNQPGKIWLA +PEQ S E++ELDESSPF DLTD ++ D FGMMGMAFHPNF +NGRFFASFNCDK +P C+ RCACNSDVGCDPSK+ +S PCQYH VVAE+S NG A +PS+AE AKP+EVRRIFT+GLP + +HGGQ+L P D Y+YIM GDGG KG+ NFAQNK SLLGK+MR+D+DN+P+ E +DL WGNYS+PRDNPYS+DK+ QPEIWA GLR+PWRCSFD ERPSYF+CAD GQDQYEEVDIIT+GGNYGW YEGP + + + D ++PIFPV+GY+HSD+NK+ GSAAISGGY YRS TDPC+YGSY+Y DLYA N W A E P NSGNF+ IPFSCA DSP+NCS+VPNS L ALGYIFSFG+DN KD YILTSTGVYR+V+PSRC++TCSKE+ ++ P + S+GH
Sbjct: 1 MNNQLNLLFSF-ICLLLYSFFNPSSSLPLCTDLRAPAIPQKPLAFCPYNGRVCCDSSKDLQLQKLFEGMNITDDTACSSAVKSILCSTCDQFSAELFKVKSRPRPVPVLCNSTATSENS-------FCSSVWDSCQNIPITNSPFAPSLKTKAGESQNSNSSLLTDFWQSKNDFCEAFGGNSDKDSLCFSGEQVLLEKNETLQPPNGMCLEKIADGAYLNMVPHPDGSNRAFFSNQPGKIWLATIPEQDSEEAMELDESSPFADLTDDVYLDARFGMMGMAFHPNFDKNGRFFASFNCDKAKSPRCAGRCACNSDVGCDPSKI-NSDDNKQPCQYHTVVAEFSVNGIAPNPSKAEKAKPSEVRRIFTMGLPFTANHGGQILIGPEDGYLYIMMGDGGSKGDSFNFAQNKKSLLGKIMRVDIDNIPSQEEISDLGHWGNYSVPRDNPYSQDKDLQPEIWALGLRDPWRCSFDSERPSYFICADVGQDQYEEVDIITRGGNYGWSMYEGPFRFKNASAD------DSMDPIFPVLGYNHSDINKEVGSAAISGGYVYRSKTDPCIYGSYLYGDLYAKNFWAAQENPYNSGNFTTRGIPFSCAHDSPLNCSSVPNSPLPALGYIFSFGQDNRKDTYILTSTGVYRVVRPSRCNYTCSKEIVRAAESPGPSAPSDGH 658
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7W5Y2 ((HIPL1 protein-like {ECO:0000313|RefSeq:XP_009770049.1}))
HSP 1 Score: 934.095 bits (2413), Expect = 0.000e+0
Identity = 451/673 (67.01%), Postives = 531/673 (78.90%), Query Frame = 0
Match: A0A1U7W5Y2 ((HIPL1 protein-like {ECO:0000313|RefSeq:XP_009770049.1}))
HSP 1 Score: 934.095 bits (2413), Expect = 0.000e+0
Identity = 451/673 (67.01%), Postives = 531/673 (78.90%), Query Frame = 0
Query: 1 MEGAFNFFFLFCLCLLLLPY--PISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISD-TACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSSSKQATASYCSSVWDTCQDISIKNSPFAPSLQ-GAGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPT-ESNADL--WGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTSSPPNTPPSSSNGH 666
M N F F +CLLL + P SSLPLCTDL AP PQKPL FCPY+G VCCDS+KDLQLQK +E MNI+D TAC+S VKSILC+TCD FSAEL+ SR RPVPVLCNST ++ +S +CSSVWD+CQ+I I NSPFAPSL+ AG QNS SS LTD WQSK+DFC++FGG+S +SLCF G+ + L K+ETL P GMCLEK+ +GAYLNMV HPDGSNRAFFSNQPGKIWLA +PEQ S E++ELDESSPF DLTD ++ D FGMMGMAFHPNF +NGRFFASFNCDK +P C+ RCACNSDVGCDPSK+ +S PCQYH VVAE+S NG A +PS+AE AKP+EVRRIFT+GLP + +HGGQ+L P D Y+YIM GDGG KG+ NFAQNK SLLGK+MR+DVDN+P+ E +DL WGNYS+PRDNPYS+DK+ QPEIWA GLR+PWRCSFD ERPSYF+CAD GQDQYEEVDIIT+GGNYGW YEGP + + + D ++PIFPV+GY+HSD+NK+ GSAAISGGY YRS TDPC+YGSY+Y DLYA N W A E P NSGNF+ IPFSCA DSP+NCS+VPNS L ALGYIFSFG+DN KD YILTSTGVYR+V+PSRC++TCSKE ++ P + S+GH
Sbjct: 1 MNNQLNLLFSF-ICLLLYSFFNPSSSLPLCTDLRAPAIPQKPLAFCPYNGRVCCDSSKDLQLQKLFEGMNITDDTACSSAVKSILCSTCDQFSAELFKVKSRPRPVPVLCNSTATSENS-------FCSSVWDSCQNIPITNSPFAPSLKTKAGESQNSNSSLLTDFWQSKNDFCEAFGGNSDKDSLCFSGEQVLLEKNETLQPPNGMCLEKIADGAYLNMVPHPDGSNRAFFSNQPGKIWLATIPEQDSEEAMELDESSPFADLTDDVYLDARFGMMGMAFHPNFDKNGRFFASFNCDKAKSPRCAGRCACNSDVGCDPSKI-NSDDNKQPCQYHTVVAEFSVNGIAPNPSKAEKAKPSEVRRIFTMGLPFTANHGGQILIGPEDGYLYIMMGDGGSKGDSFNFAQNKKSLLGKIMRVDVDNIPSQEEISDLGHWGNYSVPRDNPYSQDKDLQPEIWALGLRDPWRCSFDSERPSYFICADVGQDQYEEVDIITRGGNYGWSMYEGPFRFKNASAD------DSMDPIFPVLGYNHSDINKEVGSAAISGGYVYRSKTDPCIYGSYLYGDLYAKNFWAAQENPYNSGNFTTRGIPFSCAHDSPLNCSSVPNSPLPALGYIFSFGQDNRKDTYILTSTGVYRVVRPSRCNYTCSKETVRAAESPGPSAPSDGH 658
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TNG9 (GSDH domain-containing protein {ECO:0000259|Pfam:PF07995})
HSP 1 Score: 932.169 bits (2408), Expect = 0.000e+0
Identity = 438/627 (69.86%), Postives = 516/627 (82.30%), Query Frame = 0
Match: D7TNG9 (GSDH domain-containing protein {ECO:0000259|Pfam:PF07995})
HSP 1 Score: 932.169 bits (2408), Expect = 0.000e+0
Identity = 438/627 (69.86%), Postives = 516/627 (82.30%), Query Frame = 0
Query: 29 TDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNSTGSAGSS-SKQATASYCSSVWDTCQDISIKNSPFAPSLQG-AGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPTESNAD---LWGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEV 650
TDL AP P+KPL FCPY+G+VCCDSAKDLQLQKQ++AMNISD CAS +KSILCATCDPFSAEL+ S RPVPVLCNST S SS SKQ T+S+CS+VWD CQ++ I NSPFAPSLQG G NS++S LT+LWQSKS FCD+FGGSS + S+CF+G+ +SL +ET+ PKGMCLEK+ NG+Y+NMVAHPDGSNRAFFS+Q GKIWLA VPEQGSG +LELDES PFVD+TD + D GMMGMAFHPNFA NGRFFAS+NCDKV +P CS RC+CNSDV CDPSK+ SSG PCQYH VVAE++ANGTASDPS A +AKP+E+RRIFT+GLP ++ HGGQ+LF PAD Y+Y+M GDGG KG+ +NFAQNK SLLGK+MR+D+DN+P+ D LWGNYS+PRDNPYS+DKE +PEIWA GLRNPWRCSFD ERP YF+C D GQDQYEEVDIITKGGNYGW YEGPLL+ +Q+ N + + INPIFP++GY HSDVN K GSAA+SGGYFYRS TDPCMYGSY+Y DLYA +W AAE P SGNF+ TSIPFSC+ DSP+ C +VP S L ALGYI+SF EDN KD++ILTS GV+R+V+PSRC++TCSKE
Sbjct: 33 TDLRAPLVPKKPLAFCPYNGSVCCDSAKDLQLQKQFQAMNISDEGCASLMKSILCATCDPFSAELFKVQSGPRPVPVLCNSTDSGNSSMSKQGTSSFCSNVWDECQNVFISNSPFAPSLQGRGGVSVNSSASKLTELWQSKSVFCDAFGGSSDNGSICFDGEAVSLENTETIVPPKGMCLEKISNGSYINMVAHPDGSNRAFFSSQAGKIWLASVPEQGSGGTLELDESDPFVDITDLVLSDPRAGMMGMAFHPNFAHNGRFFASYNCDKVQSPVCSGRCSCNSDVNCDPSKIDPSSGVQ-PCQYHAVVAEFTANGTASDPSSATSAKPSEMRRIFTMGLPFTSDHGGQILFGPADGYLYLMMGDGGSKGDPYNFAQNKKSLLGKIMRLDIDNIPSGEEIDELGLWGNYSVPRDNPYSEDKELEPEIWALGLRNPWRCSFDSERPEYFLCGDVGQDQYEEVDIITKGGNYGWRVYEGPLLFTPEQTPGGNTSANSINPIFPILGYKHSDVNPKLGSAAMSGGYFYRSMTDPCMYGSYLYGDLYASYIWAAAERPEGSGNFTGTSIPFSCSSDSPIQCGSVPESSLPALGYIYSFAEDNRKDIFILTSNGVFRVVRPSRCNYTCSKET 658
BLAST of XM_017371302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TLS6 ((HIPL1 protein {ECO:0000313|RefSeq:XP_011086425.1}))
HSP 1 Score: 931.784 bits (2407), Expect = 0.000e+0
Identity = 444/668 (66.47%), Postives = 540/668 (80.84%), Query Frame = 0
Match: A0A6I9TLS6 ((HIPL1 protein {ECO:0000313|RefSeq:XP_011086425.1}))
HSP 1 Score: 931.784 bits (2407), Expect = 0.000e+0
Identity = 444/668 (66.47%), Postives = 540/668 (80.84%), Query Frame = 0
Query: 18 LPYPISSLPLCTDLGAPFSPQKPLTFCPYSGNVCCDSAKDLQLQKQYEAMNISDTACASTVKSILCATCDPFSAELYTAGSRSRPVPVLCNST-GSAGSS-SKQATASYCSSVWDTCQDISIKNSPFAPSLQG-AGTPQNSTSSTLTDLWQSKSDFCDSFGGSSGDNSLCFEGKPISLNKSETLPAPKGMCLEKVGNGAYLNMVAHPDGSNRAFFSNQPGKIWLAKVPEQGSGESLELDESSPFVDLTDQIHFDTSFGMMGMAFHPNFAQNGRFFASFNCDKVSNPGCSARCACNSDVGCDPSKLPSSSGADAPCQYHMVVAEYSANGTASDPSQAETAKPTEVRRIFTIGLPSSTSHGGQVLFSPADKYMYIMTGDGGLKGEGHNFAQNKNSLLGKVMRIDVDNLPTESNA---DLWGNYSIPRDNPYSKDKEAQPEIWAEGLRNPWRCSFDVERPSYFVCADTGQDQYEEVDIITKGGNYGWPAYEGPLLYDSKQSTTKNNTVDVINPIFPVVGYSHSDVNKKEGSAAISGGYFYRSTTDPCMYGSYVYADLYAGNVWTAAETPINSGNFSATSIPFSCAKDSPMNCSTVPNSRLAALGYIFSFGEDNNKDVYILTSTGVYRIVQPSRCDFTCSKEVKTSSPPNTPPSSSNGH----HTSIQYLFS 675
+P+P SS PLCTDL P S + L FCPY+G VCC S++DL LQKQ+EAMNISD+ACA +K+ILCATCDPF+A+L+ GS SR VPVLCNST G+A SS S Q S+CS+VW +CQ++ I NSPFAP+L+ A P+N+T S LTDLW SKS+FC +FGG S +NSLCF+GKP+S NK++TLP PKG+CLEK+GNG+Y+NMVAHPDGSNRAFFSN GKIWLA +PEQ SG+ L LDES+PFVDLTDQ++ DTSFGMMG+AFHPNFA NGRFFASFNCDKV +PGC RCACNSDV CDPS+L S + + C+YH ++AEYSANGTAS+PS AE A+P EVRRIFT+GLP +++HGGQ+LF PAD Y+YIM GDGG KG+ +NFAQNK SLLGK++R+DVDN+P+E WGNYS+P+DNPYS+DKE +PEIWA GLRNPWRCSFD ERPSYF+CAD GQDQYEEVDII+KGGNYGW YEGPL++ +++ N + D I+PIFPV+GYSHS++N+ GSAAISGGYFYRS DPC YGSY+Y DLYA ++W A ETP SGNF++T PFSCA DSP+ C +VP S L AL YIFSFGEDN KDVYILT +GVYR+V+PSRC++TCSKEV TS P PP+ S G+ H+ + + S
Sbjct: 27 VPFPSSSFPLCTDLRQPTSLKGRLAFCPYNGKVCCSSSQDLLLQKQFEAMNISDSACADALKAILCATCDPFAAKLFNIGSDSRSVPVLCNSTAGTAVSSLSSQEDDSFCSTVWKSCQNVLILNSPFAPALKSKARVPRNATLSKLTDLWGSKSEFCSAFGGDSDENSLCFDGKPVSFNKTDTLPPPKGICLEKLGNGSYINMVAHPDGSNRAFFSNLAGKIWLATIPEQDSGDVLGLDESNPFVDLTDQVYLDTSFGMMGLAFHPNFATNGRFFASFNCDKVKSPGCGGRCACNSDVSCDPSELGSLNAGEV-CRYHTIIAEYSANGTASNPSMAEKARPHEVRRIFTMGLPFTSNHGGQILFGPADGYLYIMMGDGGSKGDPYNFAQNKKSLLGKIIRVDVDNIPSEDEIVKLGRWGNYSVPQDNPYSEDKEMEPEIWAYGLRNPWRCSFDSERPSYFLCADVGQDQYEEVDIISKGGNYGWRVYEGPLVFQPQKTPGGNTSADSIDPIFPVLGYSHSNINQL-GSAAISGGYFYRSQADPCTYGSYLYGDLYASHIWAATETPQTSGNFTSTDTPFSCAPDSPIKCDSVPKSNLPALEYIFSFGEDNRKDVYILTQSGVYRVVRPSRCNYTCSKEVVTSGHP--PPTPSQGYLVYPHSELMFFVS 690
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7CBP7 | E-Value: 0.000e+0, PID: 73.33 | (Putative HIPL1 protein-like isoform X1 {ECO:00003... [more] |
| A0A5J5AS01 | E-Value: 0.000e+0, PID: 73.06 | GSDH domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A068TW67 | E-Value: 0.000e+0, PID: 68.91 | GSDH domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A6P6UYR6 | E-Value: 0.000e+0, PID: 68.75 | (HIPL1 protein-like isoform X1 {ECO:0000313|RefSeq... [more] |
| A0A314KIM5 | E-Value: 0.000e+0, PID: 67.26 | (Hipl1 protein {ECO:0000313|EMBL:OIT29205.1})[more] |
| A0A1S4BUU1 | E-Value: 0.000e+0, PID: 66.77 | (HIPL1 protein-like {ECO:0000313|RefSeq:XP_0164925... [more] |
| A0A1S3XV63 | E-Value: 0.000e+0, PID: 66.86 | (HIPL1 protein-like {ECO:0000313|RefSeq:XP_0164437... [more] |
| A0A1U7W5Y2 | E-Value: 0.000e+0, PID: 67.01 | (HIPL1 protein-like {ECO:0000313|RefSeq:XP_0097700... [more] |
| D7TNG9 | E-Value: 0.000e+0, PID: 69.86 | GSDH domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A6I9TLS6 | E-Value: 0.000e+0, PID: 66.47 | (HIPL1 protein {ECO:0000313|RefSeq:XP_011086425.1}... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |