Resource Type:
Polypeptide
Name:
XM_017368537.1
Identifier:
XM_017368537.1-protein
Sequence:
MEEAQSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSF
FACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLC
DLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQ
YWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFT
AWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVF
YQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAA
SFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRL
GSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAG
AVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGAS
SKGITEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPK
GTPESTLPG
Sequence Length:
509
Sequence Checksum:
4bb4a9924281e4f52a6a9a8b1ca6f909
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368537.1, derives from mRNA, XM_017368537.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SMF4 ((high affinity nitrate transporter 2.5 {ECO:0000313|RefSeq:XP_011071124.1, ECO:0000313|RefSeq:XP_011071125.1}))
HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 385/502 (76.69%), Postives = 451/502 (89.84%), Query Frame = 0
Match: A0A6I9SMF4 ((high affinity nitrate transporter 2.5 {ECO:0000313|RefSeq:XP_011071124.1, ECO:0000313|RefSeq:XP_011071125.1}))
HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 385/502 (76.69%), Postives = 451/502 (89.84%), Query Frame = 0
Query: 7 EPERGGNN---RPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGITEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPES 505
E +GG++ + F++PVDSEHKAT+ ++ SVAAPHMRAFHLS++SFFACFVSTFAAPPL+P+IRDNL+LT+TDIGNAGIAAVSGAVFARI MGT CDLFGPR+ASASL LLT PAVYC +IANSA SF++VRF GFS+ATFVSTQ+WMSSMFSA VVGTANG+ GGWGNLGGGATQ+IMP VF +IH IGATKFTAWRIAFFIPALFQTL+AY +FFLGQDLPDGN+S+L +SGDKHKD F++VF+ AVTNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF VNLHTAGIIAASFGLAN+FSRP GG +SD+MA +FGMRGRLWTL++VQ LGG+FC+LLG++GSL S+ VM+IFSVFVQA+CGLT+GVVPFVSRRSLG+ISG+ GGGG+ GAVLTQVIFFRGSR+ TETG+TLMG+MIICCTL I LI+FPQWGG+F G +SK TEE+YYMSEW E+E+G+HKASLKF+ NS+ ERGKR+ SAP+P TP++
Sbjct: 2 EISQGGDDSYQKKFALPVDSEHKATEFRLFSVAAPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLDLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASASLTLLTAPAVYCTSIANSAVSFLLVRFFTGFSLATFVSTQFWMSSMFSARVVGTANGVAGGWGNLGGGATQLIMPLVFDLIHHIGATKFTAWRIAFFIPALFQTLSAYGIFFLGQDLPDGNYSQLHKSGDKHKDNFAQVFHHAVTNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANLFSRPGGGMLSDLMAKKFGMRGRLWTLWIVQTLGGVFCILLGKVGSLGVSIAVMLIFSVFVQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSRYSTETGLTLMGVMIICCTLLITLIHFPQWGGMFCGPASKSTTEEDYYMSEWNSAEKEQGFHKASLKFSENSRSERGKRIGSAPTPNNSTPDT 503
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RER8 ((High affinity nitrate transporter 2.5 like {ECO:0000313|EMBL:PSS28507.1}))
HSP 1 Score: 780.015 bits (2013), Expect = 0.000e+0
Identity = 387/505 (76.63%), Postives = 446/505 (88.32%), Query Frame = 0
Match: A0A2R6RER8 ((High affinity nitrate transporter 2.5 like {ECO:0000313|EMBL:PSS28507.1}))
HSP 1 Score: 780.015 bits (2013), Expect = 0.000e+0
Identity = 387/505 (76.63%), Postives = 446/505 (88.32%), Query Frame = 0
Query: 1 MEEAQSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGITEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPES 505
ME++ + + N F++PVDSEHKAT ++ SVAAPHMRAFHLS+VSFF CFVSTFAAPPLIP+IRDNLNLTSTDIGNAGIA+VSGAVFARI MGT CDLFGPR+ASASL+LLT PAV+ AIANS SF++VRF GFS+ATFVSTQ+WMSS+FSA VVGTANG++GGWGNLGGGATQ+IMP VFS+I IGA KFTAWRIAFFIPAL QTL+A+AVFFLGQDLPDGNFS+L++SG KHKD FS+VF+ AVTNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF VNLHTAGIIAASFGLANIFSRP GG ISD++A R+GMRGRLW L++ Q LGGLFC++LGR+GSL+ SVTVM+IFSVFVQA+CGLT+GVVPFVSRRSLG+ISG+ GGGG+ GAVLTQVIFFRGSRFK ETGITLMGIM++CCTLP+ IYFPQWGG+F G SSK TEE+YYMSEW+ E+EKG+H+ASLKFA NS+ ERG+RV S +P TP +
Sbjct: 1 MEKSDHDADTNSNPPKFALPVDSEHKATVFRLFSVAAPHMRAFHLSWVSFFCCFVSTFAAPPLIPIIRDNLNLTSTDIGNAGIASVSGAVFARITMGTACDLFGPRLASASLILLTAPAVFFTAIANSPVSFLMVRFFTGFSLATFVSTQFWMSSLFSARVVGTANGVSGGWGNLGGGATQLIMPLVFSVIRDIGAVKFTAWRIAFFIPALMQTLSAFAVFFLGQDLPDGNFSQLKKSGKKHKDNFSQVFHYAVTNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANIFSRPAGGMISDIVAKRYGMRGRLWALWIAQTLGGLFCIMLGRVGSLSVSVTVMVIFSVFVQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSRFKMETGITLMGIMMVCCTLPMAFIYFPQWGGMFCGPSSKAATEEDYYMSEWSSSEKEKGFHQASLKFADNSRSERGRRVGSETTPADQTPST 505
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061E862 ((Nitrate transporter2.5 {ECO:0000313|EMBL:EOY00557.1}))
HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 368/498 (73.90%), Postives = 439/498 (88.15%), Query Frame = 0
Match: A0A061E862 ((Nitrate transporter2.5 {ECO:0000313|EMBL:EOY00557.1}))
HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 368/498 (73.90%), Postives = 439/498 (88.15%), Query Frame = 0
Query: 5 QSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGI-TEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKG 501
+++P++ F++PVDSEHKAT+ ++ SVAAPHMRAFHLS++SFFACFVSTFAAPPL+P+IRDNLNLT+TDIGNAG+A+VSGAVFARI MGT CDLFGPR+ASASL+LLT PAVY +IA+S SF++VRF GFS+ATFVSTQ+WMSSMFS VVGTANG+ GWGNLGGGATQ+IMP VFS+I IGA KFTAWRIAFFIPALFQTLAA+A+ GQDLPDGN+ RL++SG K KDKFS+VFY +TNYRGWILALTYGYCFGVELTVDNIIA+YFYDRF + LHTAGIIAASFGLAN+FSRP GG ISD MA+RFGMRGRLW L+++Q LGG+FC++LG++GSL+AS+ VMIIFSVFVQA+CGLT+GVVPFVSRRSLGV+SG+ GGGG+ GA+LTQ+IFF+GS++ ETGITLMG+MI+CCTLPI LIYFPQWGG+F G SS+ I TEE+YY+SEW+ E+EKG H+ASLKFA NS+ ERG+RV+SA P G
Sbjct: 9 ETQPQK------FALPVDSEHKATEFRLFSVAAPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLILLTAPAVYFTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSTPVVGTANGVAAGWGNLGGGATQLIMPLVFSVIRDIGAVKFTAWRIAFFIPALFQTLAAFAILIFGQDLPDGNYQRLQKSGTKQKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANLFSRPAGGIISDRMASRFGMRGRLWALWIIQTLGGVFCIILGQVGSLSASIIVMIIFSVFVQAACGLTFGVVPFVSRRSLGVVSGMTGGGGNVGAILTQLIFFKGSKYSKETGITLMGVMIVCCTLPIFLIYFPQWGGMFCGPSSEKIATEEDYYLSEWSSNEKEKGLHQASLKFADNSRSERGRRVHSAAMPSNG 500
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1B2N7 ((high affinity nitrate transporter 2.5-like {ECO:0000313|RefSeq:XP_021292884.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 369/504 (73.21%), Postives = 443/504 (87.90%), Query Frame = 0
Match: A0A6J1B2N7 ((high affinity nitrate transporter 2.5-like {ECO:0000313|RefSeq:XP_021292884.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 369/504 (73.21%), Postives = 443/504 (87.90%), Query Frame = 0
Query: 5 QSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGI-TEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPESTL 507
+++P++ +++PVDSEHKAT+ ++ SVA PHMRAFHLS++SFFACFVSTFAAPPL+P+IRDNLNLT+TDIGNAG+A+VSGAVFARI MGT CDLFGPR+ASASL+LLT PAVY + A+S SF++VRF GFS+ATFVSTQ+WMSSMFSA VVGTANG+ GWGNLGGGATQ+IMP VFS+I IGA KFTAWRIAFFIPALFQTLAA+A+ GQDLPDGN+ RL++SG K KDKFS+VFY +TNYRGWILALTYGYCFGVELTVDNIIA+YFYDRF + L TAGIIAASFGLAN+FSRP GG+ISD+MA RFGMRGRLW L+++Q LGG+FC++LG++GSL+AS+TVMIIFSVFVQA+CGLT+GVVPFVSRRSLGVISG+ GGGG+ GAVLTQ+IFF+GS++ ETGITLMG+MI+CCTL I LIYFPQWGG+F G SS+ I TEE+YY+SEW+ +E+EKG H+ASLKFA NS+ ERG+ V+SA P GTP +T+
Sbjct: 9 ETQPQK------YALPVDSEHKATEFRLFSVAPPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLILLTAPAVYFTSFASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPLVFSVIRDIGAVKFTAWRIAFFIPALFQTLAAFAILIFGQDLPDGNYQRLQKSGTKQKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLRTAGIIAASFGLANLFSRPAGGFISDMMARRFGMRGRLWALWIIQTLGGVFCIILGQVGSLSASITVMIIFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIVCCTLAIFLIYFPQWGGMFCGPSSEKIATEEDYYLSEWSSKEKEKGLHQASLKFADNSRSERGRGVHSAAMPSNGTPPTTV 506
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7B1D0 ((High affinity nitrate transporter 2.5-like {ECO:0000313|EMBL:KZV25489.1}))
HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0
Identity = 381/506 (75.30%), Postives = 449/506 (88.74%), Query Frame = 0
Match: A0A2Z7B1D0 ((High affinity nitrate transporter 2.5-like {ECO:0000313|EMBL:KZV25489.1}))
HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0
Identity = 381/506 (75.30%), Postives = 449/506 (88.74%), Query Frame = 0
Query: 1 MEEAQSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIH-GIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGITEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPES 505
ME ++SE E N + F++PVDSEHKAT+ ++ SVAAPHMRAFHLS+VSFFACFVSTFAAPPL+P+IRDNLNLT+TDIGNAGIAAVSGAVFARI MGT CDLFGPR+ASA+L L+T PAVYC AIA+S SF++VRF GFS+ATFVSTQ+WMSS+FS VVGTANG+ GGWGNLGGGATQ+IMP VF +IH IG+TKFTAWRIAFFIPALFQTL+AY +FFLGQDLPDGN+S L +SGDKHKD FSKV Y A+TNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF VNLHTAGIIAASFGLANIFSRP GG +SD+ A +FGMRGRLWTL++VQ LGG+FC+ LG++GSL SV +M+IFSVFVQA+CGLT+GVVPFVSRRSLG++SG+ GGGG+ GAVLTQVIFFRGS++ TE G+ LMG+M+ICCTL I+LI+FPQWGG+F G SSKG+TEE+YY+SEWT E+EKG+HKAS+KF+ NS+ ERGK+V+SAP+P TP +
Sbjct: 1 MEISKSEYEYS-NPKTFALPVDSEHKATEFRLFSVAAPHMRAFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASAALTLITAPAVYCTAIASSPISFLLVRFFTGFSLATFVSTQFWMSSLFSGKVVGTANGVAGGWGNLGGGATQLIMPLVFDLIHKNIGSTKFTAWRIAFFIPALFQTLSAYGIFFLGQDLPDGNYSELHKSGDKHKDDFSKVVYHAITNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANIFSRPGGGMLSDLTAKKFGMRGRLWTLWLVQTLGGIFCIFLGKVGSLGLSVAIMLIFSVFVQAACGLTFGVVPFVSRRSLGIVSGMTGGGGNVGAVLTQVIFFRGSQYTTEKGLELMGVMMICCTLVIMLIHFPQWGGMFCGPSSKGVTEEDYYISEWTSAEREKGFHKASMKFSENSRSERGKKVDSAPTPADRTPNT 505
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200RAX8 ((Major facilitator superfamily {ECO:0000313|EMBL:OVA19868.1}))
HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0
Identity = 366/507 (72.19%), Postives = 433/507 (85.40%), Query Frame = 0
Match: A0A200RAX8 ((Major facilitator superfamily {ECO:0000313|EMBL:OVA19868.1}))
HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0
Identity = 366/507 (72.19%), Postives = 433/507 (85.40%), Query Frame = 0
Query: 2 EEAQSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASS-KGITEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPESTL 507
EA SE ER F +PVDSE+KAT K+ SVA PHMRAFHLS++SFF+CFVSTFAAPPL+P+IRDNLNLT+TDIGNAGIA+VSGAVFAR++MGT CDLFGPR+ASASL+LLT+PAVY A A+S SF++VRF GFS++TFVSTQYWMS+MFSA VVGTANG+ GWGNLGGGATQ++MP VFS+I IG+T+FTAWRIAFFIPALFQTL AYAVFF GQDLPDGNF RL++SG+K KDK S+VFY +TNYRGWILALTYGY FGVELTVDNIIA+YFYDRF + LHTAGIIAA FGLANI SRP GG ISD+MA RFGMRGRLW+L++VQ +GG+ CV+LG++GSL+ SVTVM++FS FVQA+CGLT+GVVPFVSRRSLG+ISG+ G GG+ GAVLTQ+IFF+GS++ ETGITLMGIMIICCTLP+ LIYFPQWGG+F G S+ + TEE YYMSEW ++E++KG H SLKFA SK ERG+RV S P+P T + +
Sbjct: 4 NEAGSESER----PKFDLPVDSENKATNFKLVSVAKPHMRAFHLSWISFFSCFVSTFAAPPLLPIIRDNLNLTATDIGNAGIASVSGAVFARLVMGTACDLFGPRLASASLILLTSPAVYFTATASSPISFLLVRFFTGFSLSTFVSTQYWMSTMFSANVVGTANGIAAGWGNLGGGATQLLMPVVFSLIQKIGSTEFTAWRIAFFIPALFQTLTAYAVFFFGQDLPDGNFRRLQKSGEKAKDKLSQVFYHGITNYRGWILALTYGYSFGVELTVDNIIAEYFYDRFNLKLHTAGIIAACFGLANIVSRPAGGVISDMMAKRFGMRGRLWSLWLVQTIGGILCVVLGKVGSLSGSVTVMLVFSFFVQAACGLTFGVVPFVSRRSLGLISGMTGAGGNVGAVLTQLIFFKGSKYSKETGITLMGIMIICCTLPLWLIYFPQWGGMFCGPSTEEKATEEEYYMSEWNDKEKDKGLHHGSLKFADTSKSERGRRVASEPAPSNVTSPTNV 506
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830CEL7 ((High affinity nitrate transporter 2.5 {ECO:0000313|EMBL:GFP97479.1}))
HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 379/503 (75.35%), Postives = 444/503 (88.27%), Query Frame = 0
Match: A0A830CEL7 ((High affinity nitrate transporter 2.5 {ECO:0000313|EMBL:GFP97479.1}))
HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 379/503 (75.35%), Postives = 444/503 (88.27%), Query Frame = 0
Query: 3 EAQSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGITEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPES 505
E + + N + F++ VDSEHKAT+ K+ S+AAPHMRAFHLS++SFFACFVSTFAAPPL+P+IRDNL+LT+TDIGNAGIAAVSGAVFARI MGT CDLFGPR+ASA+L LLT PAVYC +IA+SA SF++VRF GFS+ATFVSTQ+WMSS+FS+TVVGTANG+ GGWGNLGGGATQ+IMP VF +I +GAT FTAWRIAFFIPALFQTL+AY +FFLGQDLPDGN+S L++SGDKHKDKFS+VFY AV NYRGWILALTYGYCFGVELT+DNIIAQYFYDRF V+LHTAGIIAASFGLAN+FSRP GG +SD++A RFGMRGRLWTL+VVQ LGG+FC+LLG++GSL+ SV VMI+FSVFVQA+CGLT+GVVPFVSRRSLG+ISG+ GGGG+ GAVLTQVIFFRGSR+ TE GITLMG+MIICCTL I LIYFPQWGG+F ASSKG TEE+YYM EWT E+EKG+H+ SL+F+ NS+ ERG+R+ PS GTP +
Sbjct: 2 EFSGDADESSNEKKFAVAVDSEHKATEFKLLSIAAPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLDLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASATLTLLTAPAVYCTSIADSATSFLLVRFFTGFSLATFVSTQFWMSSLFSSTVVGTANGVAGGWGNLGGGATQLIMPLVFDLIRRVGATTFTAWRIAFFIPALFQTLSAYGIFFLGQDLPDGNYSELQKSGDKHKDKFSRVFYYAVGNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFDVSLHTAGIIAASFGLANLFSRPGGGMLSDLVARRFGMRGRLWTLWVVQSLGGVFCILLGKVGSLSVSVAVMIVFSVFVQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSRYSTEAGITLMGVMIICCTLVIALIYFPQWGGMFCAASSKGATEEDYYMDEWTSAEKEKGFHRPSLRFSENSRSERGRRIGPLPS---GTPTN 501
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3IC75 ((Major facilitator superfamily {ECO:0000313|EMBL:OMO80155.1}))
HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 369/503 (73.36%), Postives = 440/503 (87.48%), Query Frame = 0
Match: A0A1R3IC75 ((Major facilitator superfamily {ECO:0000313|EMBL:OMO80155.1}))
HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 369/503 (73.36%), Postives = 440/503 (87.48%), Query Frame = 0
Query: 5 QSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGI-TEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAP-SPPKGTPES 505
+++P++ F++PVDSEHKAT+ ++ S AAPHMR FHLS+VSFFACFVSTFAAPPL+P+IRDNLNLT+TDIGNAGIA+VSGAVFARI MGT CDLFGPR+AS+SL+LLT PAVY IA+S SF++VRF GFS+A+FVSTQ+WMSSMFSA VVGTANG+ GWGNLGGGATQ+IMP VF++I IGA K+TAWRIAFFIPALFQTLAA+A+ GQDLPDGN+ RL++SGDK KD+FS+VFY ++NYRGWILALTYGYCFGVELTVDNIIA+YFYDRF + LHTAGIIAASFGLAN+FSRP GG ISD+MA RFGMRGRLW L+ VQ LGG+FC++LG++GSL AS+ VM+IFSVFVQA+CGLT+GVVPFVSRRSLGVISG+ GGGG+ GAVLTQ+IFF+GS++ ETGITLMG+MIICCTLPILLIYFPQWGG+F G SS+ + TEE+YY+SEW+ +E+EKG H+ASLKFA NSK ERG+RV+SA S TP +
Sbjct: 9 ETQPQK------FALPVDSEHKATEFRLFSAAAPHMRTFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGIASVSGAVFARIAMGTACDLFGPRLASSSLILLTAPAVYFTVIASSPVSFLLVRFFTGFSLASFVSTQFWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPLVFAVIRDIGAVKYTAWRIAFFIPALFQTLAAFAILIFGQDLPDGNYQRLQKSGDKQKDQFSRVFYHGISNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANLFSRPAGGMISDMMAKRFGMRGRLWALWTVQTLGGVFCIILGKVGSLGASIAVMLIFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPILLIYFPQWGGMFCGPSSEKVATEEDYYLSEWSSKEKEKGLHEASLKFADNSKSERGRRVHSAAMSSSDATPTN 505
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6V0I1 ((High affinity nitrate transporter 2.5-like {ECO:0000313|EMBL:KAA3462645.1}))
HSP 1 Score: 763.837 bits (1971), Expect = 0.000e+0
Identity = 367/504 (72.82%), Postives = 436/504 (86.51%), Query Frame = 0
Match: A0A5B6V0I1 ((High affinity nitrate transporter 2.5-like {ECO:0000313|EMBL:KAA3462645.1}))
HSP 1 Score: 763.837 bits (1971), Expect = 0.000e+0
Identity = 367/504 (72.82%), Postives = 436/504 (86.51%), Query Frame = 0
Query: 5 QSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGI-TEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPESTL 507
++EP++ F++PVDSEHKAT+ + S AAPHMRAFHLS++SFF+CFVSTFAAPPL+P+IRDNLNLT+TDIGNAG+A+VSGAVFARI MGT CDLFGPR+ASASL+LLT PAVY +IA+S SF++VRF GFS+ATFVS Q+WMSSMFS VVGTANG+ GWGNLGGGATQ+IMP VFS+I IGA KFTAWRIAFFIPALFQTL+A+A+ GQDLPDGN+ RL+ SG+K KDKFS+VFY +TNYRGWILALTYGYCFGVELTVDNIIA+YFYDRF + LHTAGIIAASFGLAN+ SRP GG +SD+MA RFGMRGRLW L+ VQ LGG+FC++LG++GSLTAS+ VMI+FSVFVQA+CGLT+GVVPFVSRRSLGVISG+ GGGG+ GAVLTQ+IFF+GS++ ETGITLMGIMI+CCTLPI LIYFPQWGG+F G SS+ I TEE+YY+SEW+ +EQ KG H+ASLKFA NS+ ERG+RV+S P TP + +
Sbjct: 9 ETEPQK------FALPVDSEHKATEFHLFSAAAPHMRAFHLSWISFFSCFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLVLLTAPAVYFTSIASSPISFLLVRFFTGFSLATFVSAQFWMSSMFSGPVVGTANGVAAGWGNLGGGATQLIMPLVFSLIRDIGAVKFTAWRIAFFIPALFQTLSAFAILIFGQDLPDGNYQRLQNSGNKQKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANLVSRPAGGVLSDMMAKRFGMRGRLWALWAVQTLGGVFCIILGQVGSLTASIVVMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGIMIVCCTLPIFLIYFPQWGGMFCGPSSEKIATEEDYYLSEWSSKEQGKGLHQASLKFADNSRSERGRRVHSQTLPSNATPSANV 506
BLAST of XM_017368537.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2WWB9 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 367/504 (72.82%), Postives = 436/504 (86.51%), Query Frame = 0
Match: A0A5D2WWB9 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 367/504 (72.82%), Postives = 436/504 (86.51%), Query Frame = 0
Query: 5 QSEPERGGNNRPFSIPVDSEHKATKLKIHSVAAPHMRAFHLSYVSFFACFVSTFAAPPLIPVIRDNLNLTSTDIGNAGIAAVSGAVFARIMMGTLCDLFGPRVASASLMLLTTPAVYCCAIANSAASFIVVRFLIGFSIATFVSTQYWMSSMFSATVVGTANGLTGGWGNLGGGATQIIMPYVFSIIHGIGATKFTAWRIAFFIPALFQTLAAYAVFFLGQDLPDGNFSRLERSGDKHKDKFSKVFYQAVTNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFQVNLHTAGIIAASFGLANIFSRPLGGYISDVMAARFGMRGRLWTLFVVQILGGLFCVLLGRLGSLTASVTVMIIFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGSAGAVLTQVIFFRGSRFKTETGITLMGIMIICCTLPILLIYFPQWGGLFWGASSKGI-TEENYYMSEWTEEEQEKGYHKASLKFAHNSKGERGKRVNSAPSPPKGTPESTL 507
++EP++ F++PVDSEHKAT+ + S AAPHMRAFHLS++SFF+CFVSTFAAPPL+P+IRDNLNLT+TDIGNAG+A+VSGAVFARI MGT CDLFGPR+ASASL+LLT PAVY +IA+S SF++VRF GFS+ATFVS Q+WMSSMFS VVGTANG+ GWGNLGGGATQ+IMP VFS+I IGA KFTAWRIAFFIPALFQTL+A+A+ GQDLPDGN+ RL+ SG+K KDKFS+VFY +TNYRGWILALTYGYCFGVELTVDNIIA+YFYDRF + LHTAGIIAASFGLANI SRP GG +SD+MA RFGMRGRLW L+ VQ LGG+FC++LG++GSLTAS+ VMI+FSVFVQA+CGLT+GVVPFVSRRSLGVISG+ GGGG+ GAVLTQ+IFF+GS++ ETGITLMG+MI+CCTLPI LIYFPQWGG+F G SS+ I TEE+YY+SEW+ +EQ KG H+ASLKFA NS+ ERG+RV+S P TP + +
Sbjct: 9 ETEPQK------FALPVDSEHKATEFHLFSSAAPHMRAFHLSWISFFSCFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLILLTAPAVYFTSIASSPISFLLVRFFTGFSLATFVSAQFWMSSMFSGPVVGTANGVAAGWGNLGGGATQLIMPLVFSLIRDIGAVKFTAWRIAFFIPALFQTLSAFAILIFGQDLPDGNYQRLQNSGNKQKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANIVSRPAGGVLSDMMAKRFGMRGRLWALWAVQTLGGVFCIILGQVGSLTASIVVMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIVCCTLPIFLIYFPQWGGMFCGPSSEKIATEEDYYLSEWSSKEQGKGLHQASLKFADNSRSERGRRVHSQTLPSNATPSANV 506
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9SMF4 | E-Value: 0.000e+0, PID: 76.69 | (high affinity nitrate transporter 2.5 {ECO:000031... [more] |
| A0A2R6RER8 | E-Value: 0.000e+0, PID: 76.63 | (High affinity nitrate transporter 2.5 like {ECO:0... [more] |
| A0A061E862 | E-Value: 0.000e+0, PID: 73.90 | (Nitrate transporter2.5 {ECO:0000313|EMBL:EOY00557... [more] |
| A0A6J1B2N7 | E-Value: 0.000e+0, PID: 73.21 | (high affinity nitrate transporter 2.5-like {ECO:0... [more] |
| A0A2Z7B1D0 | E-Value: 0.000e+0, PID: 75.30 | (High affinity nitrate transporter 2.5-like {ECO:0... [more] |
| A0A200RAX8 | E-Value: 0.000e+0, PID: 72.19 | (Major facilitator superfamily {ECO:0000313|EMBL:O... [more] |
| A0A830CEL7 | E-Value: 0.000e+0, PID: 75.35 | (High affinity nitrate transporter 2.5 {ECO:000031... [more] |
| A0A1R3IC75 | E-Value: 0.000e+0, PID: 73.36 | (Major facilitator superfamily {ECO:0000313|EMBL:O... [more] |
| A0A5B6V0I1 | E-Value: 0.000e+0, PID: 72.82 | (High affinity nitrate transporter 2.5-like {ECO:0... [more] |
| A0A5D2WWB9 | E-Value: 0.000e+0, PID: 72.82 | MFS domain-containing protein {ECO:0000259|PROSITE... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |