Resource Type:
Polypeptide
Name:
XM_017370959.1
Identifier:
XM_017370959.1-protein
Sequence:
MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYN
DVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEAN
IHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDA
QASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVP
PNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSS
QYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRAC
VVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGGTNYPSG
DSGRGYGRGGWGRGQGVGNRGGGHMRGMGGNMGPKNMPNAPGVGAGGNAG
GYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPG
MMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMW
NDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASRE
KERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD
SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD
Sequence Length:
645
Sequence Checksum:
3f759c0a568e92dd700e8a323b4036f9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017370959.1, derives from mRNA, XM_017370959.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A194 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0
Identity = 458/656 (69.82%), Postives = 515/656 (78.51%), Query Frame = 0
Match: A0A5B7A194 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0
Identity = 458/656 (69.82%), Postives = 515/656 (78.51%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHS--NVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQ----GRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQGV---GNRGGGHMRGMGGNMGPKNM-PNAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MD +AEEQLDYE+EEYG QK QY GGGAI ALA+DE IGEDDEYDDLYNDVNVG+GFLQ QRSEA PS G G Q QK +VPEPR E + P+E +I GV +GKY N + FP+PKE L + P + + SQK P HDAQA N+ FRG P+ Q G++ DMSGKV N P N G P+GVSQ+P N NVN NMNR I N+N IR A +NG TMLFVGELHWWTTD+++E+V SQ+G VKEIKFFDE+ASGKSKGYCQVEFYD +AAACKEGMNG++FNGRACVVAFASPQTIKQMGASY+NK+Q QPQSQ Q GRRPMND GRGGG NY SGD+GR YGRGGWGRG GGG MRG GG MG K+M A GVG GGN G YGQG+ GPAFGG PGG MHPQGMMG GFDPTYMGRG+GYGGF GPAFPGM+P FP VN MG+AGV+PHVNPAFFGRGMA NGMGMMG AGMDGPH+GMW D++MGGW GEEHG+RTRESSYGGEDG SEYGYG+ +EK RSN SREK+RGSERDW+GNSEKRHRDER+ DRD+ DR++RYREEKD YREHRQK+RD Y+DD DRGQ+S RSRSRSR PEEDHRSR+RD DYGKRRRLPS+
Sbjct: 1 MDHMAEEQLDYEDEEYGGAQKTQYQGGGAIPALADDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPSVGAGTEG-IQAQKTSVPEPRAETVAPQELSIPGVATEGKYPNAVIHFPEPKEGLTADRGPETVTVDISQKGRIPEVTHDAQAGNLAFRGSTPMPQKIGVHSADMSGKVANASAPLLNSGIGGPRGVSQMPANQMSMNVNVNMNRPIDNENQIRSAVENGGTMLFVGELHWWTTDSDLENVLSQFGRVKEIKFFDERASGKSKGYCQVEFYDVVAAAACKEGMNGHVFNGRACVVAFASPQTIKQMGASYINKTQNQPQSQPQSQSQGRRPMNDGVGRGGGMNYSSGDAGRNYGRGGWGRGGQGILNRGPGGGPMRGRGGAMGTKSMVGAAAGVGTGGNGGAYGQGLVGPAFGGHPGGLMHPQGMMGAGFDPTYMGRGAGYGGFMGPAFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGTAGMDGPHAGMWTDASMGGWGGEEHGRRTRESSYGGEDGASEYGYGEASHEKGVRSNATSREKDRGSERDWTGNSEKRHRDEREIDRDKSDRDYRYREEKDGYREHRQKERDLGYEDDWDRGQSSLRSRSRSRAMPEEDHRSRTRDVDYGKRRRLPSE 655
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HEP5 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ21194.1}))
HSP 1 Score: 758.444 bits (1957), Expect = 0.000e+0
Identity = 441/654 (67.43%), Postives = 506/654 (77.37%), Query Frame = 0
Match: A0A7J0HEP5 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ21194.1}))
HSP 1 Score: 758.444 bits (1957), Expect = 0.000e+0
Identity = 441/654 (67.43%), Postives = 506/654 (77.37%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA-QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGG-GTNYPSGDSGRGYGRGGWGRGQGVGNRGGGH--MRGMGGNMGPKNMP-NAPGVGAGGNAGG-YGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS---YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP A+EQLDY +EEY QKMQY GGGAISAL +DE IGEDDEYDDLYNDVNVG+GFLQ QRSEA P A G NGGFQ QK ++ E RPE ++ ++HGV +GKY+N G FP+ KE L + +G+ + +QK G +DAQA N+GF+G V G++ ++S + E P N G P+GV Q P N ++N N++R +AN+N +RPA +NG TMLFVGELHWWTTDAE+ESV SQYG VKEIKFFDE+ASGKSKGYCQVEFYDS SAAACKEGMNGY FNGRACVV FAS QTI+QM SY NK+QVQP SQ QGRRPMND GRGG G N P GD GR YGRGGWGRGQG+ NRG G MRG GG MG KNM NA GVG+G AGG YGQGM GP FGGP GG MHPQGMMG GFDPTY+GRG+GYGGF GP FPGM+P FP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMD H+GMW+D++MGG GEEHG+RTRESSYGGEDG SEYGYG+ EK RSN S EKERGSERDWSGNSEKRHRDER+ +RDR DR+ YRE+KD YR++RQ++R+ Y+DD DRGQ+SSRSRSRS+V PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPTADEQLDYGDEEYVGAQKMQYRGGGAISALVDDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVP-APGLSNGGFQAQKTSLHESRPEVAGSQQPSVHGVGTEGKYSNAGTHFPEQKEGLAVDR-GQMGTTDIAQKGRLQGMPYDAQAGNLGFQGSNHVVPHKIGIDSTEISARAATESAPPLNSGTGGPKGVPQKPANQMSMNINVHRPMANENQVRPALENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSVSAAACKEGMNGYAFNGRACVVTFASAQTIRQMATSYANKNQVQPPSQSQGRRPMNDGVGRGGNGMNQPGGDVGRNYGRGGWGRGQGILNRGSGAGPMRGRGGAMGAKNMVGNASGVGSGAIAGGAYGQGMVGPTFGGPLGGLMHPQGMMGAGFDPTYIGRGAGYGGFSGPPFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGPTGMDVHHAGMWSDTSMGGGGGEEHGRRTRESSYGGEDGTSEYGYGEANYEKGARSNAGSWEKERGSERDWSGNSEKRHRDEREMERDRPDRDCMYREDKDGYRDNRQRERERDLGYEDDWDRGQSSSRSRSRSKVMPEEDHR-RSRDADYGKRRRLPSE 651
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P3E3 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSR84805.1}))
HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 441/654 (67.43%), Postives = 506/654 (77.37%), Query Frame = 0
Match: A0A2R6P3E3 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSR84805.1}))
HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 441/654 (67.43%), Postives = 506/654 (77.37%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA-QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGG-GTNYPSGDSGRGYGRGGWGRGQGVGNRGGGH--MRGMGGNMGPKNMP-NAPGVGAGGNAGG-YGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS---YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP A+EQLDY +EEY QKMQY GGGAISAL +DE IGEDDEYDDLYNDVNVG+GFLQ QRSEA P A G NGGFQ QK ++ E RPE ++ ++HGV +GKY+N G FP+ KE L + +G+ + +QK G +DAQA N+GF+G V G++ ++S + E P N G P+GV Q P N ++N N++R +AN+N +RPA +NG TMLFVGELHWWTTDAE+ESV SQYG VKEIKFFDE+ASGKSKGYCQVEFYDS SAAACKEGMNGY+FNGRACVV FAS QTI+QM SY NK+QVQP SQ QGRRPMND GRGG G N P GD+GR YGRGGWGRGQG+ NRG G MRG GG MG KNM NA GVG+G AGG YGQGM GP FGGP GG MHPQGMMG GFDPTY+GRG+GYGGF GP FPGM+P FP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMD H+GMW+D +MGG GEEHG+RTRESSYGGEDG SEYGYG+ EK RSN S EKERGSERDWSGNSEKRHRDER+ +RDR DR+ YREEKD YR++RQ++R+ Y+DD DRGQ+SSRSRSRS+ PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPTADEQLDYGDEEYVGAQKMQYRGGGAISALVDDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVP-APGLSNGGFQAQKTSLHESRPEAAGSQQPSVHGVGTEGKYSNAGTHFPEQKEGLAVDR-GQMGTTDIAQKGRLQGMPYDAQAGNLGFQGSNHVVPHKIGVDSTEISARAATESAPPLNSGTGGPRGVPQKPANQMSMNINVHRPMANENQVRPALENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSVSAAACKEGMNGYVFNGRACVVTFASAQTIRQMATSYANKNQVQPPSQSQGRRPMNDGVGRGGNGMNQPGGDAGRNYGRGGWGRGQGILNRGSGAGPMRGRGGAMGAKNMVGNASGVGSGAIAGGAYGQGMVGPTFGGPLGGLMHPQGMMGAGFDPTYIGRGAGYGGFSGPPFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGPTGMDVHHAGMWSDMSMGGGGGEEHGRRTRESSYGGEDGNSEYGYGEANYEKGARSNVGSWEKERGSERDWSGNSEKRHRDEREMERDRPDRDCMYREEKDGYRDNRQRERERDLGYEDDWDRGQSSSRSRSRSKAMPEEDHR-RSRDADYGKRRRLPSE 651
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EYH9 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY91492.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 432/657 (65.75%), Postives = 502/657 (76.41%), Query Frame = 0
Match: A0A7J0EYH9 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY91492.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 432/657 (65.75%), Postives = 502/657 (76.41%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHS--NVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGG-----TNYPSGDSGRGYGRGGWGRGQG-VGNRGGGHMRGMGGN--MGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP+AEEQLDY +EEY QKMQY GAISALA+DE IGEDDEYDDLYNDVNVG+GFLQ QRSEA PSAG NGGFQ QK ++PEPR ++A +HGVP +GKY+N+G FP PKE L + + + + +QK G HDAQ N+G +G + TG++ ++MS KV NE P N G P Q+P N + NVN N+NR +A +N RPA +N TML+VGELHWWTTDA++ESV SQYG VKEIKFFDE+ASGKSKGYC VEFYD+A+AA CKEGMNG+ FNGRAC+V FAS QT+KQM +SYMNK+QVQPQSQ QGRRPMND GR G N P GD+G +GRGGWGRG + NRG G G MG +NM NA G+G+G G YGQG+ GPAF GPPGG MHPQGMMG GFDPTYM RG+GYGGF GP FPGM+P FP VNAMG AGV+PHVNPAFFGRGMAANGMGMMG+ GMDG H+GMW+D++MGGW GEEH +RTRESSYGGEDG SEYGYG+ +EK RSN ASREKERGSERDWSG+SEKRHR ER+ +RDR DR+HRYREEKD Y++HRQ++ D Y+DD DRGQASSRSRSRS+ PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPMAEEQLDYGDEEYVGAQKMQYQAAGAISALADDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPSAG-VGNGGFQAQKTSLPEPRSGAAGSQQA-LHGVPIEGKYSNSGTHFPKPKEELALDK-GQVVTTDIAQKVRVHGMTHDAQGGNLGIQGSILMPLKTGVDSIEMSVKVVNESSPLVNSGTGGPTNAPQMPANQTGMNVNVNVNRPMAYENQFRPALENSETMLYVGELHWWTTDADLESVLSQYGRVKEIKFFDERASGKSKGYCHVEFYDAAAAAVCKEGMNGHAFNGRACIVTFASQQTVKQMPSSYMNKNQVQPQSQSQGRRPMNDGLGRDGVGRGGGMNQPGGDAGENFGRGGWGRGGQGILNRGSGGGPTRGRGGPMGARNMVGNASGIGSGVGGGAYGQGLAGPAFVGPPGGLMHPQGMMGAGFDPTYMSRGAGYGGFSGPPFPGMLPSFPAVNAMGFAGVAPHVNPAFFGRGMAANGMGMMGSTGMDGHHAGMWSDTSMGGWGGEEHSRRTRESSYGGEDGASEYGYGEASHEKGVRSNAASREKERGSERDWSGSSEKRHRGEREMERDRSDRDHRYREEKDGYQDHRQREHDMGYEDDWDRGQASSRSRSRSKAMPEEDHR-RSRDADYGKRRRLPSE 653
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6REC5 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSS26919.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 437/657 (66.51%), Postives = 506/657 (77.02%), Query Frame = 0
Match: A0A2R6REC5 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSS26919.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 437/657 (66.51%), Postives = 506/657 (77.02%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHS--NVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGG-----TNYPSGDSGRGYGRGGWGRGQGV---GNRGGGHMRGMGGNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP+AEEQLDYE+EEY QKMQY GAISALA+DE IGEDDEYDDLYNDVNVG+GFLQ QRSEA PSAG NGGFQ QK ++PEPR ++A++HGVP +GKY+N+G FP PKE L + + + + +QK G HDAQ N+G +G + G++ +MS KV NE P N P Q+P N + NVN N+NR +A +N RPA +NG TML+VGELHWWTTDA++ESV SQYG VKEIKFFDE+ASGKSKGYC VEFYD+A+AA CKEGMNG+ FNGRAC+V FAS QT+KQM +SYMNK+QVQPQSQ QGRRPMND GR G N P GD+GR +GRGGWGRG GGG MRG GG MG +NM NA G+G+G G YGQG+ GPAF GPPGG MHPQGMMG GFDPTYMGRG+GYGGF GP FPGM+P FP VNAMG AGV+PHVNPAFFGRGMAANGMGMMG+ GMDG H+GMW+D +MGGW GEEH +RTRESSYGGEDG SEYGYG+ +EK RSN AS+EKERGSERDWSGNSEKRHR ER+ +RDR DR+HRYREEKD Y++HRQ++ D+ Y+DD DRGQASSRSRSRS+ PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPMAEEQLDYEDEEYVGAQKMQYQAAGAISALADDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPSAG-VGNGGFQVQKTSLPEPRSGAAGSQQASVHGVPIEGKYSNSGTHFPKPKEELALDK-GQVVTTDIAQKVRVHGMTHDAQGGNLGIQGSYLMPLKIGVDSTEMSVKVVNESAPLVNSGTDGPTNAPQMPANQAGMNVNVNVNRPMAYENQFRPALENGETMLYVGELHWWTTDADLESVLSQYGRVKEIKFFDERASGKSKGYCHVEFYDAAAAAVCKEGMNGHAFNGRACIVTFASQQTVKQMPSSYMNKNQVQPQSQSQGRRPMNDGLGRDGVGRGGGMNQPGGDAGRNFGRGGWGRGGQGILNRGSGGGPMRGRGGPMGARNMVGNASGIGSGVGGGAYGQGLAGPAFVGPPGGLMHPQGMMGAGFDPTYMGRGAGYGGFSGPPFPGMLPSFPAVNAMGFAGVAPHVNPAFFGRGMAANGMGMMGSTGMDGHHAGMWSDMSMGGWGGEEHSRRTRESSYGGEDGASEYGYGETSHEKGVRSNAASQEKERGSERDWSGNSEKRHRGEREMERDRSDRDHRYREEKDGYQDHRQREHDTGYEDDWDRGQASSRSRSRSKAIPEEDHR-RSRDADYGKRRRLPSE 654
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZWA4 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 736.487 bits (1900), Expect = 0.000e+0
Identity = 448/652 (68.71%), Postives = 503/652 (77.15%), Query Frame = 0
Match: A0A5B6ZWA4 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 736.487 bits (1900), Expect = 0.000e+0
Identity = 448/652 (68.71%), Postives = 503/652 (77.15%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHS--NVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQGV---GNRGGGHMRGMGGNMGPKNM-PNAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP+AEEQLDY +EEYG QKMQY GGGAISALA+DE IGEDDEYDDLYNDVNVG+G LQ QRSEA PS G A GG Q QK EPR + + P+E +I GV +GKY N + FP+ KE L + P +G+ + SQK P DAQA N+ FRG P+ G++P DMSGK+ NEP P N G P+GV Q+P N NVN NMNR I N+N IRPA +NG TMLFVGELHWWTTDA++E+V SQYG VKEIKFFDE+ASGKSKGYCQVEFYD +AAACKEGMNG++FNGRACVVAFAS Q QPQSQ QGRRPMND GRGGG NYPSGD+GR YGRGGWGRG GGG MRG GG MG K+M A GVG GGN G YGQG+ GPAFGG PGG MHPQGMMG GFDPTYMGRG+GYGGF GPAF GMMP FP VN MG+AGV+PHVNPAFFGRGMA+NGMGMMG AGMDGPH+GMW D++MGGW GEEHG+RTRESSYGGEDG SEYGYG+ +EK RSN SREK+RGSERDW+GNSEKRHRDER+ DRD+ DR++RYREEKD YREHRQK+RD Y+DD DRGQ+S RSRSRSR PEEDHRSR+RD DYGKRRRLPS+
Sbjct: 1 MDPMAEEQLDYGDEEYGGTQKMQYQGGGAISALADDEMIGEDDEYDDLYNDVNVGEGLLQLQRSEAPVPSVG-AGTGGLQVQKTNGSEPRADAVAPQELSIPGVATEGKYPNAVIRFPELKEGLTADRGPEMGTVDVSQKGRVPEMTDDAQAGNLAFRGSTPMPHKIGVDPADMSGKLANEPAPLLNSGAGGPRGVLQMPTNQMGMNVNVNMNRPIVNENQIRPALENGGTMLFVGELHWWTTDADLENVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDVVAAAACKEGMNGHVFNGRACVVAFAS-------------XPQSQPQSQSQGRRPMNDGMGRGGGMNYPSGDAGRNYGRGGWGRGGQGILNRGPGGGPMRGRGGAMGTKSMVGAAAGVGTGGNGGAYGQGLVGPAFGGHPGGLMHPQGMMGAGFDPTYMGRGAGYGGFSGPAFHGMMPSFPAVNTMGLAGVAPHVNPAFFGRGMASNGMGMMGTAGMDGPHAGMWTDASMGGWGGEEHGRRTRESSYGGEDGASEYGYGEASHEKGVRSNATSREKDRGSERDWTGNSEKRHRDEREIDRDKSDRDYRYREEKDGYREHRQKERDLGYEDDWDRGQSSLRSRSRSRAMPEEDHRSRTRDVDYGKRRRLPSE 638
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V1F7 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027096899.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 432/658 (65.65%), Postives = 503/658 (76.44%), Query Frame = 0
Match: A0A6P6V1F7 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027096899.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 432/658 (65.65%), Postives = 503/658 (76.44%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEAS-GPSA-GGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA--QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMN--RQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQ--GRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQG--VGNRGGGHMRGMG-GNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD-SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP +EQLD+ +EEYG QKMQYH GGAI ALAEDE I EDDEYDDLYNDVNVG+GFLQ Q+ + S P A G NGGF +A+V +PR E ++ + NI +GKYTN+GV FPD K L ++ V + + SQK AP IH++QA N+G++G VA Q G+ +DMSGKV EP P NP G P+ + QVP NH + ++N+N R + +N +RPA +NG TMLFVGELHWWTTD E+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF D A+AAACKEGMNG++FNGRACVVA A+PQTIKQM ASYMNK+QVQ QSQ Q GRRPMND AGRG GTNYPSGD+GR +GRGGW G + N+ + G G G +G KNM NAPG G G G YGQG+ GPAFGGPP G MHPQ MMG GFDPTYMGRG+GYGGF GPAFPGM+PPFP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMDGPH+GMW D++MG W GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ ASREKERGSERDWSG+S++RHRDER+ DRDRYDR+HRYREEKD YRE+R K+RD Y+DD DRGQ S V PEE HRSRSRDADYGKRRRLPS+
Sbjct: 1 MDPGGDEQLDFGDEEYGGSQKMQYHRGGAIPALAEDEMINEDDEYDDLYNDVNVGEGFLQMQQQQRSETPRAPLGVGNGGFPAPRASVQDPRAETVVTQGVNIPRSATEGKYTNSGVRFPDQKSGLASD-VGALPGTDASQKGRAPEIIHNSQAGNLGYQGSMAVAMSQKVGVESLDMSGKVTGEPGPLLNPVAGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDTELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAAAACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNYPSGDAGRNFGRGGWAGRGGQGMPNKAPVGVPGRGRGTVGAKNMMGNAPGGGNGVTGGAYGQGLAGPAFGGPPTGLMHPQAMMGPGFDPTYMGRGAGYGGFSGPAFPGMIPPFPAVNHMGLAGVAPHVNPAFFGRGMAANGMGMMGTGGMDGPHAGMWTDTSMG-WGGEEHGRRTRESSYGGEDNASEYGYGEASHDKGVRSSAASREKERGSERDWSGSSDRRHRDEREHDRDRYDRDHRYREEKDSYREYRHKERDPGYEDDYDRGQPSRSRSRSRAV-PEEHHRSRSRDADYGKRRRLPSE 655
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UYA0 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 432/658 (65.65%), Postives = 503/658 (76.44%), Query Frame = 0
Match: A0A068UYA0 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 432/658 (65.65%), Postives = 503/658 (76.44%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEAS-GPSA-GGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA--QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMN--RQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQ--GRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQG--VGNRGGGHMRGMG-GNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD-SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP +EQLD+ +EEYG QKMQYH GGAI ALAEDE I EDDEYDDLYNDVNVG+GFLQ Q+ + S P A G NGGF +A+V +PR E ++ + NI +GKYTN+GV FPD K L ++ V + + SQK AP IH++QA N+G++G VA Q G+ +DMSGKV EP P NP G P+ + QVP NH + ++N+N R + +N +RPA +NG TMLFVGELHWWTTD E+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF D A+AAACKEGMNG++FNGRACVVA A+PQTIKQM ASYMNK+QVQ QSQ Q GRRPMND AGRG GTNYPSGD+GR +GRGGW G + N+ + G G G +G KNM NAPG G G G YGQG+ GPAFGGPP G MHPQ MMG GFDPTYMGRG+GYGGF GPAFPGM+PPFP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMDGPH+GMW D++MG W GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ ASREKERGSERDWSG+S++RHRDER+ DRDRYDR+HRYREEKD YRE+R K+RD Y+DD DRGQ S V PEE HRSRSRDADYGKRRRLPS+
Sbjct: 1 MDPGGDEQLDFGDEEYGGSQKMQYHRGGAIPALAEDEMINEDDEYDDLYNDVNVGEGFLQMQQQQRSETPRAPLGVGNGGFPAPRASVQDPRAETVVTQGVNIPRSATEGKYTNSGVRFPDQKSGLASD-VGALPGTDASQKGRAPEIIHNSQAGNLGYQGSMAVAMSQKVGVESLDMSGKVTGEPGPLLNPVAGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDTELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAAAACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNYPSGDAGRNFGRGGWAGRGGQGMPNKAPVGVPGRGRGTVGAKNMMGNAPGGGNGVTGGAYGQGLAGPAFGGPPTGLMHPQAMMGPGFDPTYMGRGAGYGGFSGPAFPGMIPPFPAVNHMGLAGVAPHVNPAFFGRGMAANGMGMMGTGGMDGPHAGMWTDTSMG-WGGEEHGRRTRESSYGGEDNASEYGYGEASHDKGVRSSAASREKERGSERDWSGSSDRRHRDEREHDRDRYDRDHRYREEKDSYREYRHKERDPGYEDDYDRGQPSRSRSRSRAV-PEEHHRSRSRDADYGKRRRLPSE 655
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VCP3 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027099742.1, ECO:0000313|RefSeq:XP_027099743.1}))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 431/658 (65.50%), Postives = 502/658 (76.29%), Query Frame = 0
Match: A0A6P6VCP3 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027099742.1, ECO:0000313|RefSeq:XP_027099743.1}))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 431/658 (65.50%), Postives = 502/658 (76.29%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEAS-GPSA-GGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA--QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMN--RQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQ--GRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQG--VGNRGGGHMRGMG-GNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD-SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP +EQLD+ +EEYG QKMQYH GGAI ALAEDE I EDDEYDDLYNDVNVG+GFLQ Q+ + S P A G NGGF +A+V +PR E ++ + NI +GKYTN+GV FPD K L ++ V + + SQK AP IH++QA N+G++G VA Q G+ +DMSGKV EP P P G P+ + QVP NH + ++N+N R + +N +RPA +NG TMLFVGELHWWTTDAE+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF D A+A ACKEGMNG++FNGRACVVA A+PQTIKQM ASYMNK+QVQ QSQ Q GRRPMND AGRG GTNYPSGD+GR +GRGGW G + N+ + G G G +G KNM NAPG G G G YGQG+ GPAFGGPP G MHPQ MMG GFDPTYMGRG+GYGGF GPAFPGM+PPFP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMDGPH+GMW D++MG W GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ ASREKERGSERDWSG+S++RHRDER+ DRDRYDR+HRYREEKD YRE+R K+RD Y+DD DRGQ S V PEE HRSRSRDADYGKRRRLPS+
Sbjct: 1 MDPGGDEQLDFGDEEYGGSQKMQYHRGGAIPALAEDEMINEDDEYDDLYNDVNVGEGFLQMQQQQRSETPRAPLGVGNGGFPAPRASVQDPRAETVVTQGVNIPRSATEGKYTNSGVRFPDQKSGLASD-VGALPGTDASQKGRAPEIIHNSQAGNLGYQGSMAVAMSQKVGVESLDMSGKVTGEPGPLLKPVAGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDAELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAATACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNYPSGDAGRNFGRGGWAGRGGQGMPNKAPVGVPGRGRGTVGAKNMMGNAPGGGNGVTGGAYGQGLAGPAFGGPPTGLMHPQAMMGPGFDPTYMGRGAGYGGFSGPAFPGMIPPFPAVNHMGLAGVAPHVNPAFFGRGMAANGMGMMGTGGMDGPHAGMWTDASMG-WGGEEHGRRTRESSYGGEDNASEYGYGEASHDKGVRSSAASREKERGSERDWSGSSDRRHRDEREHDRDRYDRDHRYREEKDSYREYRHKERDPGYEDDYDRGQPSRSRSRSRAV-PEEHHRSRSRDADYGKRRRLPSE 655
BLAST of XM_017370959.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FPD4 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ00030.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 431/653 (66.00%), Postives = 490/653 (75.04%), Query Frame = 0
Match: A0A7J0FPD4 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ00030.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 431/653 (66.00%), Postives = 490/653 (75.04%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGDGFLQFQRSEASGPSAGGAVNGGFQTQKATVPEPRPENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGG-GTNYPSGDSGRGYGRGGWGRGQGVGNRGGGHMRGMGGN--MGPKNMP-NAPGVGAGGNAGG-YGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS---YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 645
MDP AEEQLDY +EEY QKMQY GGGAISALA+DE +GEDDEYDDLYNDVNVG+GFLQ QRSEAS P G NGGFQ Q ++ +PRPE ++ ++HGV +GKY+ +P+ KE L + +G+ + SQK G HD QA N+GF+ V +H +RGVPQ P N +N N+NR + N+N RPA +NG TMLFVGELHWWTTDAE+ESV SQYG VKEIKFFDE+ASGKSKGYCQVEFYDS SAAACKEGMNGY FNGRACVV FASPQTI+QM SY NK+QVQPQSQ QGRRPMND GRGG G N P GD+GR YGRGGWGRGQG+ NRG G G MG KNM NA GVG+G AGG YGQG+ GPAFGGP GG MHPQGMMG GFDPTYMGRG+GYGGF GP FPGM+P FP VN MG+AGV+PHVNPAFFGRGMA NGMGMMG GMDG H+GMW+D++MGG GEEHG+RTRESSYGGEDG SEYGYG+ EK RSN S EKERGSERDWSGNSEKR+RDER+ +RDR DR+ YREEKD YR++RQ++R+ Y+DD DRGQ+SSRSRSRS+ PEEDHR RSRD DYGKRRRLPS+
Sbjct: 1 MDPTAEEQLDYGDEEYVGAQKMQYRGGGAISALADDEMLGEDDEYDDLYNDVNVGEGFLQLQRSEASVPVPG-LSNGGFQVQNTSLHKPRPEAAGSQQLSVHGVGTEGKYSKAVTHYPEQKEGLAADR-GQMGTTDISQKGRLQGMSHDGQAGNLGFQ------------------------VSNHEAHRGVPQ----KPVNQMGMNVNVNRPMVNENQARPALENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSVSAAACKEGMNGYAFNGRACVVTFASPQTIRQMATSYANKNQVQPQSQSQGRRPMNDGVGRGGNGMNQPGGDAGRNYGRGGWGRGQGILNRGPGGGSMRGRGGAMGAKNMVGNASGVGSGAIAGGAYGQGLAGPAFGGPLGGLMHPQGMMGAGFDPTYMGRGAGYGGFSGPPFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAVNGMGMMGPTGMDGHHAGMWSDTSMGGGGGEEHGRRTRESSYGGEDGASEYGYGEANYEKGARSNAGSWEKERGSERDWSGNSEKRNRDEREMERDRPDRDRTYREEKDGYRDNRQRERERDLGYEDDWDRGQSSSRSRSRSKAIPEEDHR-RSRDVDYGKRRRLPSE 622
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A194 | E-Value: 0.000e+0, PID: 69.82 | RRM domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A7J0HEP5 | E-Value: 0.000e+0, PID: 67.43 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A2R6P3E3 | E-Value: 0.000e+0, PID: 67.43 | (Cleavage and polyadenylation specificity factor s... [more] |
| A0A7J0EYH9 | E-Value: 0.000e+0, PID: 65.75 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A2R6REC5 | E-Value: 0.000e+0, PID: 66.51 | (Cleavage and polyadenylation specificity factor s... [more] |
| A0A5B6ZWA4 | E-Value: 0.000e+0, PID: 68.71 | RRM domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P6V1F7 | E-Value: 0.000e+0, PID: 65.65 | (cleavage and polyadenylation specificity factor s... [more] |
| A0A068UYA0 | E-Value: 0.000e+0, PID: 65.65 | RRM domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P6VCP3 | E-Value: 0.000e+0, PID: 65.50 | (cleavage and polyadenylation specificity factor s... [more] |
| A0A7J0FPD4 | E-Value: 0.000e+0, PID: 66.00 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |