Resource Type:
Genetic Marker
Name:
MK001062 GSSR-063
Identifier:
MK001062_GSSR_063
Organism:
Marker Type:
SSR
Publication:
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001062 GSSR-063, is adjacent to primer, GSSR-63-F. |
| The genetic_marker, MK001062 GSSR-063, is adjacent to primer, GSSR-63-R. |
| The genetic_marker, MK001062 GSSR-063, is located in gene, DCAR_010711. |
| The genetic_marker, MK001062 GSSR-063, is adjacent to gene, LOC108212497. |
| The marker_locus, GSSR-063, is an instance of genetic_marker, MK001062 GSSR-063. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_2.4 | Chr3 | 37.901 | GSSR-063 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr3 | 51.709 | GSSR-063 | MapViewer |
| 2015 SFF×HM2 | Chr3 | 33.255 | GSSR-063 | MapViewer |
| 2014 yel×cola | LG3 | 48 | GSSR-063 | MapViewer |
| 2015 MB Merged | Chr3 | 37.901 | GSSR-063 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr3 | 37.901 | GSSR-063 | MapViewer |
| 2016 Integ NG full map | CH3 | 46.917 | GSSR-063 | MapViewer |
| 2011 B493×QAL QAL | LG03 | 81.6 | GSSR-063 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr3 | 33.255 | GSSR-063 | MapViewer |
Synonyms:
- MK001062
Sequence Coordinates:
DCARv2_Chr3:27393941..27394272-
View location in JBrowse:
Sequence:
GATTCTGCACCGGTTCTTTAGTTTCCTCCATAGCCTCATAGGCGACGATA
ATATTAACTTAAACTTCAATTTTGGCACACTTTTCATCCTCCAACTCCGC
TTGGGACTACCTCCTAGCGTTACTGTCTTCATGCTCTTACGACGTGCTTC
GAATGTTGCGTTGTATCCCGTCGGGCTGGACTTACGGCGATATCTTTTGG
AGCTTCCACTCAACGAGCTTGATGAAAATATTTCCATTAGTTTTAATTAT
GATGATTAGGGACGTGTAAGAAGAGCTGTTTGTTTTGTTTTGTGCAGCAG
AGATGGGAGATTGTTGAGTGAGTGAGTGAGTTTTGTAGAATGAATCATGT
GTATTTATAATACAAGTCGTGGCTTGGGGTTCGCTTGGCAGTTTCGTATA
GTCATGGTCGCACGAGAAGGGGTGTTTGACTATGACTATTAGGATTATTT
ACTTTCGCACATGTCATATATTTTGCACTTGTCCCCTTAGAAATTCAATT
AAAGGT
Sequences:
>MK001062_GSSR_063 ID=MK001062_GSSR_063; Name=MK001062 GSSR-063; organism=Daucus carota; type=genetic_marker
GATTCTGCACCGGTTCTTTAGTTTCCTCCATAGCCTCATAGGCGACGATA
ATATTAACTTAAACTTCAATTTTGGCACACTTTTCATCCTCCAACTCCGC
TTGGGACTACCTCCTAGCGTTACTGTCTTCATGCTCTTACGACGTGCTTC
GAATGTTGCGTTGTATCCCGTCGGGCTGGACTTACGGCGATATCTTTTGG
AGCTTCCACTCAACGAGCTTGATGAAAATATTTCCATTAGTTTTAATTAT
GATGATTAGGGACGTGTAAGAAGAGCTGTTTGTTTTGTTTTGTGCAGCAG
AGATGGGAGATTGTTGAGTGAGTGAGTGAGTTTTGTAGAATGAATCATGT
GTATTTATAATACAAGTCGTGGCTTGGGGTTCGCTTGGCAGTTTCGTATA
GTCATGGTCGCACGAGAAGGGGTGTTTGACTATGACTATTAGGATTATTT
ACTTTCGCACATGTCATATATTTTGCACTTGTCCCCTTAGAAATTCAATT
AAAGGT
This is the primary representative sequence for this feature.
Sequence Length:
506