MK001064 GSSR-065

Resource Type: 
Genetic Marker
Name: 
MK001064 GSSR-065
Identifier: 
MK001064_GSSR_065
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI NuccoreLoading content
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK001064 GSSR-065, is adjacent to primer, GSSR-65-F.
The genetic_marker, MK001064 GSSR-065, is adjacent to primer, GSSR-65-R.
The genetic_marker, MK001064 GSSR-065, is located in gene, DCAR_006329.
The genetic_marker, MK001064 GSSR-065, is located in gene, LOC108210186.
The marker_locus, GSSR-065, is an instance of genetic_marker, MK001064 GSSR-065.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 SS10611061-213.276GSSR-065MapViewer
2016 Integ NG bin mapCH254.844GSSR-065MapViewer
2016 70349 NG bin mapChr253.076GSSR-065MapViewer
2016 Integ NG full mapCH218.102GSSR-065MapViewer
2011 B493×QAL QALLG0266.7GSSR-065MapViewer
2011 SS1061QTL1061QTL-716.25GSSR-065MapViewer
2016 70349 NG full mapChr253.076GSSR-065MapViewer
2011 B493×QAL B493LG0285GSSR-065MapViewer
Synonyms: 
  • MK001064
Sequence Coordinates: 
DCARv2_Chr2:24327454..24327849+
View location in JBrowse: 
Sequence: 
ACCATAACCTAGCACTAAAACACTGGATTACAGGCTTTAGGCACTGCAAA
ACAGAAACCCAGAAGCTTCAATGCCACAATTATGTCACATGATATTTAAA
TCTTGTGTGTGTGTGTGTGTATTAACTACGAAGAAATCATATCCATTTCT
CACTGTTATCAATATATCATGATTAAAGCAGTTCAATGGTATAGTAGGAG
TGATTCAATGGTAGGAGTTTAATGTTTGAGTTAATTTCTTCATGCAGATG
ATTGCAGCTTAAAGCAGGAGTAACTGACAAAAACCAACCGACCAAAAGAT
CTACCGTTCGACCTGATTCAATGGTATAGTATGCATAGAGGGGCTAAAGT
GTAAAAACTACAGAATAATTGGGCTTTCACAAAATCAAAACTAACATCAT
CTTACTACATCAATCGCCATGACCTACAGAGTCACAGTTCTCCAACCACA
GTCCTGACTGTCAGTTTGTCAGAAAAGCCTCACAAGAATTACGCCCAATA
TATATCCATATTTTCAACCTAGGAATTAGCTCCAAAGTATTACATCAAGA
CATACTCACAAAACTCAACTTTTGCCTCAATTCCAGCTGAAAA
Sequences: 
>MK001064_GSSR_065 ID=MK001064_GSSR_065; Name=MK001064 GSSR-065; organism=Daucus carota; type=genetic_marker
ACCATAACCTAGCACTAAAACACTGGATTACAGGCTTTAGGCACTGCAAA
ACAGAAACCCAGAAGCTTCAATGCCACAATTATGTCACATGATATTTAAA
TCTTGTGTGTGTGTGTGTGTATTAACTACGAAGAAATCATATCCATTTCT
CACTGTTATCAATATATCATGATTAAAGCAGTTCAATGGTATAGTAGGAG
TGATTCAATGGTAGGAGTTTAATGTTTGAGTTAATTTCTTCATGCAGATG
ATTGCAGCTTAAAGCAGGAGTAACTGACAAAAACCAACCGACCAAAAGAT
CTACCGTTCGACCTGATTCAATGGTATAGTATGCATAGAGGGGCTAAAGT
GTAAAAACTACAGAATAATTGGGCTTTCACAAAATCAAAACTAACATCAT
CTTACTACATCAATCGCCATGACCTACAGAGTCACAGTTCTCCAACCACA
GTCCTGACTGTCAGTTTGTCAGAAAAGCCTCACAAGAATTACGCCCAATA
TATATCCATATTTTCAACCTAGGAATTAGCTCCAAAGTATTACATCAAGA
CATACTCACAAAACTCAACTTTTGCCTCAATTCCAGCTGAAAA
This is the primary representative sequence for this feature.
Sequence Length: 
593