MK001091 GSSR-092

Resource Type: 
Genetic Marker
Name: 
MK001091 GSSR-092
Identifier: 
MK001091_GSSR_092
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
  3. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  4. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 3 relationships.
Relationships
The genetic_marker, MK001091 GSSR-092, is adjacent to primer, GSSR-92-F.
The genetic_marker, MK001091 GSSR-092, is adjacent to primer, GSSR-92-R.
The marker_locus, GSSR-092, is an instance of genetic_marker, MK001091 GSSR-092.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 SS10611061-453.553GSSR-092MapViewer
2016 Integ NG full mapCH412.785GSSR-092MapViewer
2014 yel×colaLG455.5GSSR-092MapViewer
2011 SS1061QTL1061QTL-567.42GSSR-092MapViewer
2016 Integ NG bin mapCH412.833GSSR-092MapViewer
2011 B493×QAL B493LG04106.8GSSR-092MapViewer
2016 70349 NG bin mapChr456.243GSSR-092MapViewer
2016 70349 NG full mapChr456.243GSSR-092MapViewer
Synonyms: 
  • MK001091
Sequence Coordinates: 
DCARv2_Chr4:4540881..4541164-
View location in JBrowse: 
DCARv2_Chr4:4540881..4541164-
Sequence: 
GTTTCCAAATATATTTCGAAACTGATTTGAATTATACATTGAATGTGTGT
GGTTTCTTGGAAAAATCTTTGTGACCTGCATACAGAAGGCATCGTGTGTT
CATAAATAAAAGTAAAGTATCACGTAACATGAGAAGAATCTGATGATTAT
GAAAGTGAGCACGCCGAAAAGATGCTACCAGCTTCTTTGATACGATGGTG
CGTTGTGAGATAGTTAACTACATCACACATACATACATACATACATACAT
ACATACATACATACATACATATATACATACATATATATATACACACGAGG
AAGATCCTAAGAAAACTCAGTTTATTAAGAAAATCGAAGAACCCACTTAA
TCACCGTTG
Sequences: 
>MK001091_GSSR_092 ID=MK001091_GSSR_092; Name=MK001091 GSSR-092; organism=Daucus carota; type=genetic_marker
GTTTCCAAATATATTTCGAAACTGATTTGAATTATACATTGAATGTGTGT
GGTTTCTTGGAAAAATCTTTGTGACCTGCATACAGAAGGCATCGTGTGTT
CATAAATAAAAGTAAAGTATCACGTAACATGAGAAGAATCTGATGATTAT
GAAAGTGAGCACGCCGAAAAGATGCTACCAGCTTCTTTGATACGATGGTG
CGTTGTGAGATAGTTAACTACATCACACATACATACATACATACATACAT
ACATACATACATACATACATATATACATACATATATATATACACACGAGG
AAGATCCTAAGAAAACTCAGTTTATTAAGAAAATCGAAGAACCCACTTAA
TCACCGTTG
This is the primary representative sequence for this feature.
Sequence Length: 
359