MK001093 GSSR-094

Resource Type: 
Genetic Marker
Name: 
MK001093 GSSR-094
Identifier: 
MK001093_GSSR_094
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 3 relationships.
Relationships
The genetic_marker, MK001093 GSSR-094, is adjacent to primer, GSSR-94-F.
The genetic_marker, MK001093 GSSR-094, is adjacent to primer, GSSR-94-R.
The marker_locus, GSSR-094, is an instance of genetic_marker, MK001093 GSSR-094.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr527.373GSSR-094MapViewer
2011 B493×QAL QALLG0561.6GSSR-094MapViewer
2016 Integ NG full mapCH540.542GSSR-094MapViewer
2016 Integ NG bin mapCH540.201GSSR-094MapViewer
2016 70349 NG full mapChr527.373GSSR-094MapViewer
Synonyms: 
  • MK001093
Sequence: 
ACCAGTAGTAACATATGTAGGTCTATATTTATATATTGGAATTGACTCCT
CTTTTGGATCATATCTTGTGGTAACCAAAGCACCCTTGGTATAAGTGGAG
TGACAGGAGTTAATACACACACACACACACATACATACACACACACACAT
ATATACACACACATACATATTATAAAATATTATACGGAGACAACTATTTT
GTTGGACATCTGAAACAACATAGTTTGTGTGCAAACAGAATAACATGTCA
CCTACAAAATAACATATTTTATAATGTTCTACTTGTAAAACATATATAGT
TTTCAAGATCACCTATAAATGCATACATTTATTAATATTCAAATAAAAAT
CGGCATCCAGACATATGTAAAAGAATTACTCACCCTATAGATCGTTGAAA
TCATAAATATATAATTATTGAAATGTTGTTGCCTTTTAAAATATATTGCC
TTATAGTTTGATCGATGGGCTTCCATGAACTTCAACATTTAGTAGACACT
ACATACAAAAAGGTGTGGAGACTATATAAAGAAGAGAACATCGAAGAATA
TTTTGGAGATCTTTTACCTTGAATCAACCTAATGGTATGTCCAAGGAAAC
CTTGATAAATTAATTGGCAAGCTATGAGATGAGCATGTCATTTGGCTTAA
AAGGAATGCGAATCCAGGAAATCATAGTTAGAGGAAAGCCTTGTAAGGTT
GTATCAATTACAATTAAGATATCTATAATGCACTTTACAAGT
Sequences: 
>MK001093_GSSR_094 ID=MK001093_GSSR_094; Name=MK001093 GSSR-094; organism=Daucus carota; type=genetic_marker
ACCAGTAGTAACATATGTAGGTCTATATTTATATATTGGAATTGACTCCT
CTTTTGGATCATATCTTGTGGTAACCAAAGCACCCTTGGTATAAGTGGAG
TGACAGGAGTTAATACACACACACACACACATACATACACACACACACAT
ATATACACACACATACATATTATAAAATATTATACGGAGACAACTATTTT
GTTGGACATCTGAAACAACATAGTTTGTGTGCAAACAGAATAACATGTCA
CCTACAAAATAACATATTTTATAATGTTCTACTTGTAAAACATATATAGT
TTTCAAGATCACCTATAAATGCATACATTTATTAATATTCAAATAAAAAT
CGGCATCCAGACATATGTAAAAGAATTACTCACCCTATAGATCGTTGAAA
TCATAAATATATAATTATTGAAATGTTGTTGCCTTTTAAAATATATTGCC
TTATAGTTTGATCGATGGGCTTCCATGAACTTCAACATTTAGTAGACACT
ACATACAAAAAGGTGTGGAGACTATATAAAGAAGAGAACATCGAAGAATA
TTTTGGAGATCTTTTACCTTGAATCAACCTAATGGTATGTCCAAGGAAAC
CTTGATAAATTAATTGGCAAGCTATGAGATGAGCATGTCATTTGGCTTAA
AAGGAATGCGAATCCAGGAAATCATAGTTAGAGGAAAGCCTTGTAAGGTT
GTATCAATTACAATTAAGATATCTATAATGCACTTTACAAGT
This is the primary representative sequence for this feature.
Sequence Length: 
742