MK001111 GSSR-112 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK001111 GSSR-112

Identifier:

MK001111_GSSR_112

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.

Cross Reference:


NCBI Nuccore	FJ816221

Relationship:

There are 3 relationships.
Relationships
The genetic_marker, MK001111 GSSR-112, is adjacent to primer, GSSR-112-F.
The genetic_marker, MK001111 GSSR-112, is adjacent to primer, GSSR-112-R.
The marker_locus, GSSR-112, is an instance of genetic_marker, MK001111 GSSR-112.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2011 B493×QAL QAL	LG05	4.8	GSSR-112	MapViewer
2011 B493×QAL B493	LG05	4.8	GSSR-112	MapViewer
2016 70349 NG bin map	Chr5	70.457	GSSR-112	MapViewer
2016 Integ NG bin map	CH5	0	GSSR-112	MapViewer
2016 Integ NG full map	CH5	0.25	GSSR-112	MapViewer
2016 70349 NG full map	Chr5	70.457	GSSR-112	MapViewer

Synonyms:

MK001111

Sequence:

ACCTCTCTTGTYYAAGAAMACCACACGCACCGTCGCTCTCTCTCTCTCTC
TCTCTCTCTCACACACACACAAACACACACACACATACAAAAACACATAC
AAATTCATGTGCCGTCTCTCTCTTTTAAATTCCAGCATCTGAACCTCTTA
ATAACTCACCTGGTGATACTGTCCTGACATGTCGAGCATACTTGGTGTGG
ACTGTGT

Sequences:

Primary genetic marker Sequence (207bp)

>MK001111_GSSR_112 ID=MK001111_GSSR_112; Name=MK001111 GSSR-112; organism=Daucus carota; type=genetic_marker
ACCTCTCTTGTYYAAGAAMACCACACGCACCGTCGCTCTCTCTCTCTCTC
TCTCTCTCTCACACACACACAAACACACACACACATACAAAAACACATAC
AAATTCATGTGCCGTCTCTCTCTTTTAAATTCCAGCATCTGAACCTCTTA
ATAACTCACCTGGTGATACTGTCCTGACATGTCGAGCATACTTGGTGTGG
ACTGTGT

This is the primary representative sequence for this feature.

Sequence Length:

207