Resource Type:
Genetic Marker
Name:
MK001118 GSSR-119
Identifier:
MK001118_GSSR_119
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001118 GSSR-119, is adjacent to primer, GSSR-119-F. |
| The genetic_marker, MK001118 GSSR-119, is adjacent to primer, GSSR-119-R. |
| The genetic_marker, MK001118 GSSR-119, is located in gene, LOC108195923. |
| The marker_locus, GSSR-119, is an instance of genetic_marker, MK001118 GSSR-119. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr7 | 24.068 | GSSR-119 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr7 | 34.729 | GSSR-119 | MapViewer |
| 2016 70349 NG full map | Chr7 | 24.068 | GSSR-119 | MapViewer |
| 2015 MB Merged | Chr7 | 34.729 | GSSR-119 | MapViewer |
| 2016 Integ NG bin map | CH7 | 36.026 | GSSR-119 | MapViewer |
| 2011 B493×QAL B493 | LG07 | 85.8 | GSSR-119 | MapViewer |
| 2011 B493×QAL QAL | LG07 | 81 | GSSR-119 | MapViewer |
| 2016 Integ NG full map | CH7 | 34.827 | GSSR-119 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr7 | 27.841 | GSSR-119 | MapViewer |
| 2015 SFF×HM2 | Chr7 | 21.272 | GSSR-119 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr7 | 21.272 | GSSR-119 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr7 | 34.729 | GSSR-119 | MapViewer |
Synonyms:
- MK001118
Sequence Coordinates:
DCARv2_Chr7:18266988..18267351+
View location in JBrowse:
Sequence:
ACAGTTATTTGAAATTGTTACTATTACAAGAAAATGAATTTTAAGTAAAA
TATTGGTCTGAATCTCATGGGCATTTATGAGTCGTCGGCAGCACTAGAGT
AATACCTACAGTAGTAAGTCATACCAAGTCAAAGTGTAAACAAAGCTAAA
ACCCTCAAATCTCTGCTAGGCTTTGCTGCTTCAGCTGCTATTACTTACAA
CTTGTATGTATGTATGTATGTATGTATACTTGTCCGCCCACTTAATTCTT
CAAATTGTTTGCATTTTTCTATGATCCCAACTTGCGCATTCTTGATCCTA
TTTTGGTCTGAATTGCAGACTATACAATACCCAGATTTGGATTTGATGAA
TTTGTTTCACATGTGTTGCTCCTTTTTACTTTGATAACTTCGAATTGAGT
CGTTGATATAGCCTGATCGTATATCGTTGATATGAATTTCTTGTCTCGAA
TTAAATTAGTATTTCTCAGTGGGACAAGGAGATGGATATTTGTGGTGGTT
TTAGTAGCTGTAACTCATTTATTTTGTCAGTCCCTCATGCTTCCATATAC
GAATTCTGTGCTCTCTCTCTTGCAACATGGCTTGCTCCCACTGCAGGGGC
AACTCAACATCGTTAATGCTTCATCCGTCAGCAATGACTCCGAATCTGCA
GCTACTACTCTACGCCTGGACAAGGGATCTAAAAGCAGTGATAATTCAGA
TATCAAAGTTCCCTTGGAGACGGATTTCGATATGGAAGG
Sequences:
>MK001118_GSSR_119 ID=MK001118_GSSR_119; Name=MK001118 GSSR-119; organism=Daucus carota; type=genetic_marker
ACAGTTATTTGAAATTGTTACTATTACAAGAAAATGAATTTTAAGTAAAA
TATTGGTCTGAATCTCATGGGCATTTATGAGTCGTCGGCAGCACTAGAGT
AATACCTACAGTAGTAAGTCATACCAAGTCAAAGTGTAAACAAAGCTAAA
ACCCTCAAATCTCTGCTAGGCTTTGCTGCTTCAGCTGCTATTACTTACAA
CTTGTATGTATGTATGTATGTATGTATACTTGTCCGCCCACTTAATTCTT
CAAATTGTTTGCATTTTTCTATGATCCCAACTTGCGCATTCTTGATCCTA
TTTTGGTCTGAATTGCAGACTATACAATACCCAGATTTGGATTTGATGAA
TTTGTTTCACATGTGTTGCTCCTTTTTACTTTGATAACTTCGAATTGAGT
CGTTGATATAGCCTGATCGTATATCGTTGATATGAATTTCTTGTCTCGAA
TTAAATTAGTATTTCTCAGTGGGACAAGGAGATGGATATTTGTGGTGGTT
TTAGTAGCTGTAACTCATTTATTTTGTCAGTCCCTCATGCTTCCATATAC
GAATTCTGTGCTCTCTCTCTTGCAACATGGCTTGCTCCCACTGCAGGGGC
AACTCAACATCGTTAATGCTTCATCCGTCAGCAATGACTCCGAATCTGCA
GCTACTACTCTACGCCTGGACAAGGGATCTAAAAGCAGTGATAATTCAGA
TATCAAAGTTCCCTTGGAGACGGATTTCGATATGGAAGG
This is the primary representative sequence for this feature.
Sequence Length:
739