MK001138 GSSR-139

Resource Type: 
Genetic Marker
Name: 
MK001138 GSSR-139
Identifier: 
MK001138_GSSR_139
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 3 relationships.
Relationships
The genetic_marker, MK001138 GSSR-139, is adjacent to primer, GSSR-139-F.
The genetic_marker, MK001138 GSSR-139, is adjacent to primer, GSSR-139-R.
The marker_locus, GSSR-139, is an instance of genetic_marker, MK001138 GSSR-139.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr940.871GSSR-139MapViewer
2011 SS10611061-926.842GSSR-139MapViewer
2011 SS1061QTL1061QTL-69.64GSSR-139MapViewer
2011 B493×QAL B493LG0975.2GSSR-139MapViewer
2016 70349 NG full mapChr940.871GSSR-139MapViewer
2016 Integ NG full mapCH932.486GSSR-139MapViewer
2011 B493×QAL QALLG0981.3GSSR-139MapViewer
2016 Integ NG bin mapCH934.988GSSR-139MapViewer
Synonyms: 
  • MK001138
Sequence Coordinates: 
DCARv2_Chr9:19117733..19118451-
View location in JBrowse: 
DCARv2_Chr9:19117733..19118451-
Sequence: 
ACAGTTAGACTAACCTAGATAGAAACCTTTGTTGTAATGGAGTTGGATTG
AAAGCGTGCAAGTGTTTCGTGACATGCATTGTGTTGTCAATTGTCATCCA
CACAGATGTTTTTTGCTATGAAAAAAAGATTGAAATAAAATAATCTGAAA
ATCCAAAGTAGATGCAAAAACTTAGCAGAGGAAACAACATAAGACAACAA
AGTAGATGTAAAAGATGCGTGATAAGTAAAATAATCACTTGTAACGAAAG
TATTGATTATGAATCAAAGTGATGCTGTTAATTATACACACATCTTGTCT
GTCTGTCTGTCTGTGTTGTTTGTGTAAGTTATACTACATCTGTTTTCTTA
TTCAAATCATTTCTTATGCTAATCAGAACATCTGCATGCATCACTAATTA
TCCCCTTCGATTAACTCATGTTTTCTTAATATCCATGATTTTAATACAGT
ATTCTTTTTTTTGCTAATTGATTACACACGCACACGTGGGGAGTCGGACT
CCCGACCTCCCGCAAGAGGGT
Sequences: 
>MK001138_GSSR_139 ID=MK001138_GSSR_139; Name=MK001138 GSSR-139; organism=Daucus carota; type=genetic_marker
ACAGTTAGACTAACCTAGATAGAAACCTTTGTTGTAATGGAGTTGGATTG
AAAGCGTGCAAGTGTTTCGTGACATGCATTGTGTTGTCAATTGTCATCCA
CACAGATGTTTTTTGCTATGAAAAAAAGATTGAAATAAAATAATCTGAAA
ATCCAAAGTAGATGCAAAAACTTAGCAGAGGAAACAACATAAGACAACAA
AGTAGATGTAAAAGATGCGTGATAAGTAAAATAATCACTTGTAACGAAAG
TATTGATTATGAATCAAAGTGATGCTGTTAATTATACACACATCTTGTCT
GTCTGTCTGTCTGTGTTGTTTGTGTAAGTTATACTACATCTGTTTTCTTA
TTCAAATCATTTCTTATGCTAATCAGAACATCTGCATGCATCACTAATTA
TCCCCTTCGATTAACTCATGTTTTCTTAATATCCATGATTTTAATACAGT
ATTCTTTTTTTTGCTAATTGATTACACACGCACACGTGGGGAGTCGGACT
CCCGACCTCCCGCAAGAGGGT
This is the primary representative sequence for this feature.
Sequence Length: 
521