MK001140 GSSR-141 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK001140 GSSR-141

Identifier:

MK001140_GSSR_141

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.

Cross Reference:


NCBI Nuccore	FJ816249

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK001140 GSSR-141, is adjacent to primer, GSSR-141-F.
The genetic_marker, MK001140 GSSR-141, is adjacent to primer, GSSR-141-R.
The genetic_marker, MK001140 GSSR-141, is located in gene, DCAR_028537.
The genetic_marker, MK001140 GSSR-141, is adjacent to gene, LOC108197632.
The marker_locus, GSSR-141, is an instance of genetic_marker, MK001140 GSSR-141.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 70349 NG bin map	Chr8	38.303	GSSR-141	MapViewer
2014 J.Parsons Th. HM3	Chr8	42.899	GSSR-141	MapViewer
2016 Integ NG bin map	CH8	23.451	GSSR-141	MapViewer
2016 Integ NG full map	CH8	27.965	GSSR-141	MapViewer
2015 HM3	Chr8	42.899	GSSR-141	MapViewer
2016 70349 NG full map	Chr8	38.303	GSSR-141	MapViewer
2011 B493×QAL B493	LG08	66.7	GSSR-141	MapViewer

Synonyms:

MK001140

Sequence Coordinates:

DCARv2_Chr8:5817088..5817273+

View location in JBrowse:

DCARv2_Chr8:5817088..5817273+

Sequence:

AGTTCGGCATTACATATTTACGACGAATGAATAGAAACTTTGCTGGAATG
AATTTTCGTATATATTACTCAAAATTATAGTTCAGGACATCGTATAACTA
ATTTGTCGTCCGAGATACTACAATACACCAACATACCAAAGGAAAAAAGT
GCAAGTCATATTGTAGTATATATAGCCATGCAATGCAGCTCTTCAGTATT
CTCTCTCTCCCTCTGCTCTCTCTCTCTCTCTCCTCCTCCCTCCCTCGCTC
TCTCTCCCATATATTGACACAGCATTCCACATTTCTTGGTTCATTGTAGC
CTATTGGT

Sequences:

Primary genetic marker Sequence (308bp)

>MK001140_GSSR_141 ID=MK001140_GSSR_141; Name=MK001140 GSSR-141; organism=Daucus carota; type=genetic_marker
AGTTCGGCATTACATATTTACGACGAATGAATAGAAACTTTGCTGGAATG
AATTTTCGTATATATTACTCAAAATTATAGTTCAGGACATCGTATAACTA
ATTTGTCGTCCGAGATACTACAATACACCAACATACCAAAGGAAAAAAGT
GCAAGTCATATTGTAGTATATATAGCCATGCAATGCAGCTCTTCAGTATT
CTCTCTCTCCCTCTGCTCTCTCTCTCTCTCTCCTCCTCCCTCCCTCGCTC
TCTCTCCCATATATTGACACAGCATTCCACATTTCTTGGTTCATTGTAGC
CTATTGGT

This is the primary representative sequence for this feature.

Sequence Length:

308