MK001153 GSSR-154

Resource Type: 
Genetic Marker
Name: 
MK001153 GSSR-154
Identifier: 
MK001153_GSSR_154
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 4 relationships.
Relationships
The genetic_marker, MK001153 GSSR-154, is adjacent to primer, GSSR-154-F.
The genetic_marker, MK001153 GSSR-154, is adjacent to primer, GSSR-154-R.
The genetic_marker, MK001153 GSSR-154, is located in gene, LOC108210059.
The marker_locus, GSSR-154, is an instance of genetic_marker, MK001153 GSSR-154.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 B493×QAL B493LG0289GSSR-154MapViewer
2011 B493×QAL QALLG0272.3GSSR-154MapViewer
2016 70349 NG full mapChr255.541GSSR-154MapViewer
2016 Integ NG full mapCH215.856GSSR-154MapViewer
2016 70349 NG bin mapChr255.541GSSR-154MapViewer
Synonyms: 
  • MK001153
Sequence Coordinates: 
DCARv2_Chr2:29002542..29003633-
View location in JBrowse: 
DCARv2_Chr2:29002542..29003633-
Sequence: 
TCAAACCCCTCTCACTCAAACGAAAAGCAATACAATAATACATTTTCTCA
GATCTTTAAGATTCATCTTAAGCCCTTTTTATTATCTCAATTTATCATCT
TCATCATCAATCTCTCTGTGGGTGCGCTTATATGTGATGGCGTCGAAATG
CTGCAGTAGATTGTTGACAAGAAGTTCAACATCGTTCCTTAAATCCGCCT
TTAAATCAACATCATCAGCATCCGCAGCAGCTTCCTCAGCCAAATCTTGC
AAATCCACTCCTCTCCGCCGTTTCTCTCTCTCCAGGTCTCTCTCTCTCTC
TCTCTCTCCCCCCCTCCCCCTCGCCCTCTCTCTCTCCGCTCTACTTACAT
GTTTGTGGATGCATATGGTTGAATTTTGAATTGGCTGCAATAAATTGATG
AAAATGTTGTTAAATTAATAATAGAATTCCATCGGAGTTAGGAGCGGTGC
AGTCAATGATGCCACTGCATAGTGCGGTCGCTGCAGCTAGGATGACGTCT
TGCCTCAGT
Sequences: 
>MK001153_GSSR_154 ID=MK001153_GSSR_154; Name=MK001153 GSSR-154; organism=Daucus carota; type=genetic_marker
TCAAACCCCTCTCACTCAAACGAAAAGCAATACAATAATACATTTTCTCA
GATCTTTAAGATTCATCTTAAGCCCTTTTTATTATCTCAATTTATCATCT
TCATCATCAATCTCTCTGTGGGTGCGCTTATATGTGATGGCGTCGAAATG
CTGCAGTAGATTGTTGACAAGAAGTTCAACATCGTTCCTTAAATCCGCCT
TTAAATCAACATCATCAGCATCCGCAGCAGCTTCCTCAGCCAAATCTTGC
AAATCCACTCCTCTCCGCCGTTTCTCTCTCTCCAGGTCTCTCTCTCTCTC
TCTCTCTCCCCCCCTCCCCCTCGCCCTCTCTCTCTCCGCTCTACTTACAT
GTTTGTGGATGCATATGGTTGAATTTTGAATTGGCTGCAATAAATTGATG
AAAATGTTGTTAAATTAATAATAGAATTCCATCGGAGTTAGGAGCGGTGC
AGTCAATGATGCCACTGCATAGTGCGGTCGCTGCAGCTAGGATGACGTCT
TGCCTCAGT
This is the primary representative sequence for this feature.
Sequence Length: 
509