Resource Type:
Genetic Marker
Name:
MK001191 BSSR-034
Identifier:
MK001191_BSSR_034
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001191 BSSR-034, is adjacent to primer, BSSR-34-F. |
| The genetic_marker, MK001191 BSSR-034, is adjacent to primer, BSSR-34-R. |
| The genetic_marker, MK001191 BSSR-034, is adjacent to gene, DCAR_029160. |
| The genetic_marker, MK001191 BSSR-034, is adjacent to gene, LOC108201035. |
| The marker_locus, BSSR-034, is an instance of genetic_marker, MK001191 BSSR-034. |
Synonyms:
- MK001191
Sequence Coordinates:
DCARv2_Chr9:2364877..2365093-
View location in JBrowse:
Sequence:
TTTTGGGGAGACCATGGGGGGACTTCTCGCGCACAGTGTACCTGCATTCN
ACACTCGACACTCTGGTTGACCCCGCGGGGTGGTTGGCGTGGGGAGGAGC
GCCTCCGAGAAGATGTGATACGTTAGATTACCGTGAGTTTGAGAATCATG
GAGCTGGTGCATCAACTCATAGGAGAGTTAAATGGCGGGGTTATCGTGTT
ATACGTGATCGTCGGACCGCGGAAGCTTACGACGTTGATAGATTGATTAA
TGGTAAGGTGTGGCTTCCAGGCACCGGAGTGCCGTTTGATGCAGATGTTT
GATTCAGGGATAGGCGTACGTACCACGGTACACCAACTCACTAAGTACGT
GCATGCATGCAAGGAAGATAATGATCCATATATGTTTCTTTTTGTTATTT
ATAAATTTGAGGGGGTATTCCATGAATTTTTAAGGGCTTTTTTTTTGGGA
TTTGCGATTAGGGAGGAATTGATTTTGATTTTAAATAGTGTATAAAAAGC
TGAGAAATCCAATCGAATTTAATTTTTCTTTAAATTTTGAGATATTCACT
CAAAATTTTAAATATTTACTTAAAATTTTGTGTTATTTAATTAGATTTTC
ATAAAATTCAATAAAATCTAATGATATTCAAATTCATATTGATTTAGAAT
GTATAAAATACTGAATGCTGATGAATTGTTCTTCAATTTTACACATGTTG
AAATCCACCAAAATTTATAAAATCTTAAGAAATTTGAAAAAAAATTATGT
TATAATTTCCCGAAACTCTAAATACCTTCCTAGATGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAA
TCCTTAAATACATTTAAAATTTTAACAATCCGCATGGTCATTTTTTCAAA
CCCTAATCTTCTTTCTAGCCGCTCCTTTCTATTTTCCTTTTGCTCGCCGG
GGCTTCCACCGGATCTCTACTGGTGGAAAGTTCCAAGATTTTTTATTTTC
TTCCTTCTTTCAATAAATCTTATTATAAAGTTTTGATTTTCCTAAAAATC
TTTGTTGTTAGGTAAAATTGATCTTGTTTTTCTTAAGTTCTGATATGAAT
TTGTTTTTCCGGATTTAAAGATTCAAAGCTTTTTGTTGATTTGACAATTT
TTTTTCTAGT
Sequences:
>MK001191_BSSR_034 ID=MK001191_BSSR_034; Name=MK001191 BSSR-034; organism=Daucus carota; type=genetic_marker
TTTTGGGGAGACCATGGGGGGACTTCTCGCGCACAGTGTACCTGCATTCN
ACACTCGACACTCTGGTTGACCCCGCGGGGTGGTTGGCGTGGGGAGGAGC
GCCTCCGAGAAGATGTGATACGTTAGATTACCGTGAGTTTGAGAATCATG
GAGCTGGTGCATCAACTCATAGGAGAGTTAAATGGCGGGGTTATCGTGTT
ATACGTGATCGTCGGACCGCGGAAGCTTACGACGTTGATAGATTGATTAA
TGGTAAGGTGTGGCTTCCAGGCACCGGAGTGCCGTTTGATGCAGATGTTT
GATTCAGGGATAGGCGTACGTACCACGGTACACCAACTCACTAAGTACGT
GCATGCATGCAAGGAAGATAATGATCCATATATGTTTCTTTTTGTTATTT
ATAAATTTGAGGGGGTATTCCATGAATTTTTAAGGGCTTTTTTTTTGGGA
TTTGCGATTAGGGAGGAATTGATTTTGATTTTAAATAGTGTATAAAAAGC
TGAGAAATCCAATCGAATTTAATTTTTCTTTAAATTTTGAGATATTCACT
CAAAATTTTAAATATTTACTTAAAATTTTGTGTTATTTAATTAGATTTTC
ATAAAATTCAATAAAATCTAATGATATTCAAATTCATATTGATTTAGAAT
GTATAAAATACTGAATGCTGATGAATTGTTCTTCAATTTTACACATGTTG
AAATCCACCAAAATTTATAAAATCTTAAGAAATTTGAAAAAAAATTATGT
TATAATTTCCCGAAACTCTAAATACCTTCCTAGATGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAA
TCCTTAAATACATTTAAAATTTTAACAATCCGCATGGTCATTTTTTCAAA
CCCTAATCTTCTTTCTAGCCGCTCCTTTCTATTTTCCTTTTGCTCGCCGG
GGCTTCCACCGGATCTCTACTGGTGGAAAGTTCCAAGATTTTTTATTTTC
TTCCTTCTTTCAATAAATCTTATTATAAAGTTTTGATTTTCCTAAAAATC
TTTGTTGTTAGGTAAAATTGATCTTGTTTTTCTTAAGTTCTGATATGAAT
TTGTTTTTCCGGATTTAAAGATTCAAAGCTTTTTGTTGATTTGACAATTT
TTTTTCTAGT
This is the primary representative sequence for this feature.
Sequence Length:
1210