Resource Type:
Genetic Marker
Name:
MK001245 BSSR-088
Identifier:
MK001245_BSSR_088
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001245 BSSR-088, is adjacent to primer, BSSR-88F. |
| The genetic_marker, MK001245 BSSR-088, is adjacent to primer, BSSR-88R. |
| The genetic_marker, MK001245 BSSR-088, is adjacent to gene, DCAR_002594. |
| The genetic_marker, MK001245 BSSR-088, is located in gene, LOC108211342. |
| The marker_locus, BSSR-088, is an instance of genetic_marker, MK001245 BSSR-088. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70796 NG full map | Chr1 | 25.799 | BSSR-088 | MapViewer |
| 2011 B493×QAL B493 | LG01 | 120.1 | BSSR-088 | MapViewer |
| 2016 Integ NG bin map | CH1 | 43.639 | BSSR-088 | MapViewer |
| 2016 70796 NG bin map | Chr1 | 25.799 | BSSR-088 | MapViewer |
| 2016 Integ NG full map | CH1 | 45.659 | BSSR-088 | MapViewer |
| 2011 B493×QAL QAL | LG01 | 52 | BSSR-088 | MapViewer |
Synonyms:
- MK001245
Sequence Coordinates:
DCARv2_Chr1:30992040..30992230+
View location in JBrowse:
Sequence:
CCAAAATAAATATAAATTCACTCCAATATATTCCTCCACATCTTTCTTCC
CTACAAAATAAACCAGTTTCCATTTTCATCTCCTTCCACTTTCCGTTTTT
CTCCTTCATCATTCCCCATGCCATCTCCACCACCGCCACCACTTCCGGAC
TCCCAGAAACAACTCGTCACCGCCACACCCACCAACGGCACAGTCGCCGT
GAAAAAACCTCCGGCCAAAGACCGCCACAGCAAAGTCGACGGCCGAGGCC
GCCGTATTCGCATGCCGATAATATGCGCCGCTCGCGTCTTCCAGCTCACA
AGAGAGTTAGGGCACAAGTCGGATGGTCAGACCATAGAGTGGCTGCTCCG
GCAAGCTGAGCCGTCGATCATCGCCGCCACCGGCACCGGAACAACTCCGG
CGAACTTCTCGACCGTCTCGGTATCTCTCCGTAACTCAAATAACTCTCTC
TCTGCTCCGTTAGAACAAAAGCAAGCGCCGCAGCTGAACCAACACTTGTT
TACTCCGACGCCGTTTATTCTCGGGAAGCGTGCCCGAGAAGAGGATAGTA
TTAGGGCCGGTGAGGAGAAAAGTGATGAAGTGAGTGAACACAGTGTGGGC
CCGGCCGGTGGGTTTTGGGCTTTGCCGGGTAGGCCGGACTATGGGCAGGT
GTGGAGCTTTGCGGCCGGGTCGGATATGGTGGTCCCCACGCCGGTGAATA
TGAGCCAGCAGAATAGGTATATGCAAGTGCAGGGGGAGGCTTCGGCGGCT
AGGGTTGGGAATTATTTGCCGATTACGCAAGGGCATTTGAATTTGTTGGC
GTCGTTGTCGGGGTCGCATCAGCAATCCGGTGGAGGAAGGAGAGAAGAAG
ATCATCACTGAATTTGGATAAGAATTTCAAGTGTTTATATATAGTTTCGT
GTGTGTGTGTGTTTTCGTGTGTGATTGTTGTTTTTGTTAATTATGAACTT
GTGTGAAGTAATATGTTTGGTAATTATTTAGATATTATGCAATTTGTTTA
AGTAATTTGTTAGATTTGTTTTGAAATATGCGTATTTTGGTTTCATACCA
Sequences:
>MK001245_BSSR_088 ID=MK001245_BSSR_088; Name=MK001245 BSSR-088; organism=Daucus carota; type=genetic_marker
CCAAAATAAATATAAATTCACTCCAATATATTCCTCCACATCTTTCTTCC
CTACAAAATAAACCAGTTTCCATTTTCATCTCCTTCCACTTTCCGTTTTT
CTCCTTCATCATTCCCCATGCCATCTCCACCACCGCCACCACTTCCGGAC
TCCCAGAAACAACTCGTCACCGCCACACCCACCAACGGCACAGTCGCCGT
GAAAAAACCTCCGGCCAAAGACCGCCACAGCAAAGTCGACGGCCGAGGCC
GCCGTATTCGCATGCCGATAATATGCGCCGCTCGCGTCTTCCAGCTCACA
AGAGAGTTAGGGCACAAGTCGGATGGTCAGACCATAGAGTGGCTGCTCCG
GCAAGCTGAGCCGTCGATCATCGCCGCCACCGGCACCGGAACAACTCCGG
CGAACTTCTCGACCGTCTCGGTATCTCTCCGTAACTCAAATAACTCTCTC
TCTGCTCCGTTAGAACAAAAGCAAGCGCCGCAGCTGAACCAACACTTGTT
TACTCCGACGCCGTTTATTCTCGGGAAGCGTGCCCGAGAAGAGGATAGTA
TTAGGGCCGGTGAGGAGAAAAGTGATGAAGTGAGTGAACACAGTGTGGGC
CCGGCCGGTGGGTTTTGGGCTTTGCCGGGTAGGCCGGACTATGGGCAGGT
GTGGAGCTTTGCGGCCGGGTCGGATATGGTGGTCCCCACGCCGGTGAATA
TGAGCCAGCAGAATAGGTATATGCAAGTGCAGGGGGAGGCTTCGGCGGCT
AGGGTTGGGAATTATTTGCCGATTACGCAAGGGCATTTGAATTTGTTGGC
GTCGTTGTCGGGGTCGCATCAGCAATCCGGTGGAGGAAGGAGAGAAGAAG
ATCATCACTGAATTTGGATAAGAATTTCAAGTGTTTATATATAGTTTCGT
GTGTGTGTGTGTTTTCGTGTGTGATTGTTGTTTTTGTTAATTATGAACTT
GTGTGAAGTAATATGTTTGGTAATTATTTAGATATTATGCAATTTGTTTA
AGTAATTTGTTAGATTTGTTTTGAAATATGCGTATTTTGGTTTCATACCA
This is the primary representative sequence for this feature.
Sequence Length:
1050