Resource Type:
Genetic Marker
Name:
MK001251 BSSR-094
Identifier:
MK001251_BSSR_094
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001251 BSSR-094, is adjacent to primer, BSSR-94F. |
| The genetic_marker, MK001251 BSSR-094, is adjacent to primer, BSSR-94R. |
| The genetic_marker, MK001251 BSSR-094, is located in gene, DCAR_009450. |
| The genetic_marker, MK001251 BSSR-094, is located in gene, LOC108211962. |
| The marker_locus, BSSR-094, is an instance of genetic_marker, MK001251 BSSR-094. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2011 B493×QAL B493 | LG03 | 38.1 | BSSR-094 | MapViewer |
| 2016 Integ NG full map | CH3 | 19.122 | BSSR-094 | MapViewer |
| 2016 70349 NG full map | Chr3 | 66.049 | BSSR-094 | MapViewer |
| 2011 B493×QAL QAL | LG03 | 51.7 | BSSR-094 | MapViewer |
| 2016 70349 NG bin map | Chr3 | 66.049 | BSSR-094 | MapViewer |
| 2016 Integ NG bin map | CH3 | 19.815 | BSSR-094 | MapViewer |
Synonyms:
- MK001251
Sequence Coordinates:
DCARv2_Chr3:7684350..7684598+
View location in JBrowse:
Sequence:
GGATATAAGACAAAGCTAATAACTAAAAAACTGATTTGCATCTATTAGGT
CATAACTGATCTGACATTACTAGTCACATACATACCACTTGGACTAGTGC
AGACTCAAAGTCAGATTTCCAAGGAGCCGAACTTTGAACTTGTAAAGACC
AGATTTCCTCTTGAATTTTCTTGGTAAATTGTTCATCCATTTCTCTGTTA
ATTCACAAAAACTGGTGTTTGAGGACCCAATTAATAGTAAATATGACGTC
TTTCAGATTGTCATACAATGAGCACAAGTTGTATTTATTTTTTTTGGTTG
CTTTACCTTCTGACTTTTTTCAGCTCTTCCTTAAAATTGGACACTATGTC
CTCCATATCTCTGACATCAAAGATCAATTAGACCAGACAGAATAAGTCTT
GAACACTAATATGCCAGTCAGTATTATCTTCTATTCCTGTGTACCTCTTT
ATTTTGGCATTTTCTTCCTTGAGTAACCTTAATTCCTTGGCACAAAGAGG
ATCTTGAGAAGGACAATCTCCAGGAGTCCAACCAGGTGGTGGAGTCCAAT
AGGGATCCTGCACCCCAGCTTCCTTCCTGACTTTAACAAGATCAGCACTC
TCCAACCAATACTCCATTTGACCATCTGCATTGTGTCGTCTTCGGAAGCG
CTCGACTCCACCTGGTGCAAGTTTACCCGCTACATGCTTGAGGAGATGAT
CTAACAGCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTCTTCATCAGATTCATGCTCCAGTTTCTCTTTTGATC
CTTTAACAAAGCTTGTTGAAGACTGTGGGTGGCTGATGCTGCTGTCTCCT
TGCCTGTTGAGAAACTTGACTTGACGTCGAATACCCCACCGAACCATCCC
ATTACTCTTCAGTTGAGACATTAAAGGGGTGGTTGTTTCTTTATTGAAAA
TCCCACGCAGTGCAGCAGGTTCAGGAGAGTTTTTAATCAGCCAGAACCCC
TCGAAGTAATTGTTATCATCAAATTCTTGAGCTGATATCTGACGGCTAAG
TACTTTTCCAGCTAGGTGTGTTCCCATTACAAATACCTCATCCAAAAAAG
GGTAAATATCAGTGCTGCTCATCTTGTTGAGGCTGAGATAGTTGCAAAGA
GACCTAATGCTTGGATACCTCACAGAAACATTTAACTCTGTCTTTTCAGT
CACCTATAGCCACAAAGTTACAAGAAATAAAGAAAAAGAATGCAACAAAT
AGTCAGTAACATGGAAACGAATATAAAATCAAGAATGTCACCTATCTAGC
TATCTATCTAGCTGTCTATCTATCTATCTCTCTCTCTCCCCCCATATATA
TACATATATATTATCACACAGGTTTGAAATGTAACATATTACCATCACAA
CACGAATGGATTTCAGTTGGACAGGGGTTCTGGTGGGAAGGTTCAGATGA
T
Sequences:
>MK001251_BSSR_094 ID=MK001251_BSSR_094; Name=MK001251 BSSR-094; organism=Daucus carota; type=genetic_marker
GGATATAAGACAAAGCTAATAACTAAAAAACTGATTTGCATCTATTAGGT
CATAACTGATCTGACATTACTAGTCACATACATACCACTTGGACTAGTGC
AGACTCAAAGTCAGATTTCCAAGGAGCCGAACTTTGAACTTGTAAAGACC
AGATTTCCTCTTGAATTTTCTTGGTAAATTGTTCATCCATTTCTCTGTTA
ATTCACAAAAACTGGTGTTTGAGGACCCAATTAATAGTAAATATGACGTC
TTTCAGATTGTCATACAATGAGCACAAGTTGTATTTATTTTTTTTGGTTG
CTTTACCTTCTGACTTTTTTCAGCTCTTCCTTAAAATTGGACACTATGTC
CTCCATATCTCTGACATCAAAGATCAATTAGACCAGACAGAATAAGTCTT
GAACACTAATATGCCAGTCAGTATTATCTTCTATTCCTGTGTACCTCTTT
ATTTTGGCATTTTCTTCCTTGAGTAACCTTAATTCCTTGGCACAAAGAGG
ATCTTGAGAAGGACAATCTCCAGGAGTCCAACCAGGTGGTGGAGTCCAAT
AGGGATCCTGCACCCCAGCTTCCTTCCTGACTTTAACAAGATCAGCACTC
TCCAACCAATACTCCATTTGACCATCTGCATTGTGTCGTCTTCGGAAGCG
CTCGACTCCACCTGGTGCAAGTTTACCCGCTACATGCTTGAGGAGATGAT
CTAACAGCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTCTTCATCAGATTCATGCTCCAGTTTCTCTTTTGATC
CTTTAACAAAGCTTGTTGAAGACTGTGGGTGGCTGATGCTGCTGTCTCCT
TGCCTGTTGAGAAACTTGACTTGACGTCGAATACCCCACCGAACCATCCC
ATTACTCTTCAGTTGAGACATTAAAGGGGTGGTTGTTTCTTTATTGAAAA
TCCCACGCAGTGCAGCAGGTTCAGGAGAGTTTTTAATCAGCCAGAACCCC
TCGAAGTAATTGTTATCATCAAATTCTTGAGCTGATATCTGACGGCTAAG
TACTTTTCCAGCTAGGTGTGTTCCCATTACAAATACCTCATCCAAAAAAG
GGTAAATATCAGTGCTGCTCATCTTGTTGAGGCTGAGATAGTTGCAAAGA
GACCTAATGCTTGGATACCTCACAGAAACATTTAACTCTGTCTTTTCAGT
CACCTATAGCCACAAAGTTACAAGAAATAAAGAAAAAGAATGCAACAAAT
AGTCAGTAACATGGAAACGAATATAAAATCAAGAATGTCACCTATCTAGC
TATCTATCTAGCTGTCTATCTATCTATCTCTCTCTCTCCCCCCATATATA
TACATATATATTATCACACAGGTTTGAAATGTAACATATTACCATCACAA
CACGAATGGATTTCAGTTGGACAGGGGTTCTGGTGGGAAGGTTCAGATGA
T
This is the primary representative sequence for this feature.
Sequence Length:
1501