Resource Type:
Genetic Marker
Name:
MK002157 ESSR-052
Identifier:
MK002157_ESSR_052
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
Relationships |
---|
The genetic_marker, MK002157 ESSR-052, is adjacent to primer, ESSR-052-F. |
The genetic_marker, MK002157 ESSR-052, is adjacent to primer, ESSR-052-R. |
The genetic_marker, MK002157 ESSR-052, is located in gene, DCAR_016533. |
The genetic_marker, MK002157 ESSR-052, is located in gene, LOC108219783. |
The marker_locus, ESSR-052, is an instance of genetic_marker, MK002157 ESSR-052. |

MapViewer Marker Map Positions:
Map Name | Linkage Group | Position | Locus | MapViewer |
---|---|---|---|---|
2014 J.Parsons Th. Fig_2.4 | Chr5 | 7.647 | ESSR-052 | MapViewer |
2011 SS1061QTL | 1061QTL-2 | 68.94 | ESSR-052 | MapViewer |
2014 J.Parsons Th. Br1091×HM1F3 | Chr5 | 0 | ESSR-052 | MapViewer |
2015 HM3 | Chr5 | 1.51 | ESSR-052 | MapViewer |
2016 Integ NG bin map | CH5 | 10.737 | ESSR-052 | MapViewer |
2014 J.Parsons Th. HM3 | Chr5 | 1.51 | ESSR-052 | MapViewer |
2015 SFF×HM2 | Chr5 | 10.371 | ESSR-052 | MapViewer |
2014 J.Parsons Th. Fig_3.5 | Chr5 | 7.647 | ESSR-052 | MapViewer |
2016 70796 NG bin map | Chr5 | 63.154 | ESSR-052 | MapViewer |
2015 MB Merged | Chr5 | 7.647 | ESSR-052 | MapViewer |
2016 70796 NG full map | Chr5 | 63.154 | ESSR-052 | MapViewer |
2014 J.Parsons Th. SFF×HM2 | Chr5 | 10.371 | ESSR-052 | MapViewer |
2011 SS1061 | 1061-5 | 59.391 | ESSR-052 | MapViewer |
2016 Integ NG full map | CH5 | 12.242 | ESSR-052 | MapViewer |
Synonyms:
- MK002157
Sequence Coordinates:
DCARv2_Chr5:4479014..4479237-
View location in JBrowse:
Sequence:
CTCGCAGGTGTTCCCATACTTCCCACATCACTGAAATCATCATCACCAGC
TTCTTCCGTCATAAACTCTAGATACATCATCATCTTCTTCTTCTTCTTGG
TTTTATTGTTTTGTATATTTTGTTTCAGCTTTCACTATGATAGATTGAAG
TTTAGATATACAGAATCATACATATTGCTGATTTCAATGGAGGGTCGGGG
TTTATTGTACTCTGCTGCTGCTGG
Sequences:
>MK002157_ESSR_052 ID=MK002157_ESSR_052; Name=MK002157 ESSR-052; organism=Daucus carota; type=genetic_marker
CTCGCAGGTGTTCCCATACTTCCCACATCACTGAAATCATCATCACCAGC
TTCTTCCGTCATAAACTCTAGATACATCATCATCTTCTTCTTCTTCTTGG
TTTTATTGTTTTGTATATTTTGTTTCAGCTTTCACTATGATAGATTGAAG
TTTAGATATACAGAATCATACATATTGCTGATTTCAATGGAGGGTCGGGG
TTTATTGTACTCTGCTGCTGCTGG
This is the primary representative sequence for this feature.
Sequence Length:
224