MK002157 ESSR-052

Resource Type: 
Genetic Marker
Name: 
MK002157 ESSR-052
Identifier: 
MK002157_ESSR_052
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK002157 ESSR-052, is adjacent to primer, ESSR-052-F.
The genetic_marker, MK002157 ESSR-052, is adjacent to primer, ESSR-052-R.
The genetic_marker, MK002157 ESSR-052, is located in gene, DCAR_016533.
The genetic_marker, MK002157 ESSR-052, is located in gene, LOC108219783.
The marker_locus, ESSR-052, is an instance of genetic_marker, MK002157 ESSR-052.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 J.Parsons Th. Fig_2.4Chr57.647ESSR-052MapViewer
2011 SS1061QTL1061QTL-268.94ESSR-052MapViewer
2014 J.Parsons Th. Br1091×HM1F3Chr50ESSR-052MapViewer
2015 HM3Chr51.51ESSR-052MapViewer
2016 Integ NG bin mapCH510.737ESSR-052MapViewer
2014 J.Parsons Th. HM3Chr51.51ESSR-052MapViewer
2015 SFF×HM2Chr510.371ESSR-052MapViewer
2014 J.Parsons Th. Fig_3.5Chr57.647ESSR-052MapViewer
2016 70796 NG bin mapChr563.154ESSR-052MapViewer
2015 MB MergedChr57.647ESSR-052MapViewer
2016 70796 NG full mapChr563.154ESSR-052MapViewer
2014 J.Parsons Th. SFF×HM2Chr510.371ESSR-052MapViewer
2011 SS10611061-559.391ESSR-052MapViewer
2016 Integ NG full mapCH512.242ESSR-052MapViewer
Synonyms: 
  • MK002157
Sequence Coordinates: 
DCARv2_Chr5:4479014..4479237-
View location in JBrowse: 
Sequence: 
CTCGCAGGTGTTCCCATACTTCCCACATCACTGAAATCATCATCACCAGC
TTCTTCCGTCATAAACTCTAGATACATCATCATCTTCTTCTTCTTCTTGG
TTTTATTGTTTTGTATATTTTGTTTCAGCTTTCACTATGATAGATTGAAG
TTTAGATATACAGAATCATACATATTGCTGATTTCAATGGAGGGTCGGGG
TTTATTGTACTCTGCTGCTGCTGG
Sequences: 
>MK002157_ESSR_052 ID=MK002157_ESSR_052; Name=MK002157 ESSR-052; organism=Daucus carota; type=genetic_marker
CTCGCAGGTGTTCCCATACTTCCCACATCACTGAAATCATCATCACCAGC
TTCTTCCGTCATAAACTCTAGATACATCATCATCTTCTTCTTCTTCTTGG
TTTTATTGTTTTGTATATTTTGTTTCAGCTTTCACTATGATAGATTGAAG
TTTAGATATACAGAATCATACATATTGCTGATTTCAATGGAGGGTCGGGG
TTTATTGTACTCTGCTGCTGCTGG
This is the primary representative sequence for this feature.
Sequence Length: 
224