Resource Type:
Genetic Marker
Name:
MK003180 K0624
Identifier:
MK003180_K0624
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
Relationships |
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The genetic_marker, MK003180 K0624, is adjacent to primer, K0624_X. |
The genetic_marker, MK003180 K0624, is adjacent to primer, K0624_Y. |
The genetic_marker, MK003180 K0624, is adjacent to primer, K0624_Common. |
The genetic_marker, MK003180 K0624, is located in gene, DCAR_016838. |
The genetic_marker, MK003180 K0624, is located in gene, LOC108219759. |
The marker_locus, K0624, is an instance of genetic_marker, MK003180 K0624. |

MapViewer Marker Map Positions:
Map Name | Linkage Group | Position | Locus | MapViewer |
---|---|---|---|---|
2016 Integ NG full map | CH5 | 21.764 | K0624 | MapViewer |
2015 MB Merged | Chr5 | 15.769 | K0624 | MapViewer |
2014 J.Parsons Th. Fig_4.4 | F2_Chr5 | 14.226 | K0624 | MapViewer |
2015 Br1091×HM1 | Chr5 | 12.762 | K0624 | MapViewer |
2014 J.Parsons Th. Br1091×HM1 | Chr5 | 12.762 | K0624 | MapViewer |
2016 70349 NG full map | Chr5 | 47.229 | K0624 | MapViewer |
2016 Integ NG bin map | CH5 | 21.243 | K0624 | MapViewer |
2014 J.Parsons Th. Fig_3.5 | Chr5 | 15.769 | K0624 | MapViewer |
2014 J.Parsons Th. Fig_2.4 | Chr5 | 15.769 | K0624 | MapViewer |
2016 80592 NG bin map | Chr5 | 12.762 | K0624 | MapViewer |
2016 80592 NG full map | Chr5 | 12.762 | K0624 | MapViewer |
2014 J.Parsons Th. SFF×HM2 | Chr5 | 18.759 | K0624 | MapViewer |
2014 70349 | Chromosome_5 | 47.229 | K0624 | MapViewer |
2015 SFF×HM2 | Chr5 | 18.759 | K0624 | MapViewer |
Synonyms:
- MK003180
Sequence Coordinates:
DCARv2_Chr5:8193326..8193372+
View location in JBrowse:
Sequence:
AGAAAGTAGGACTCGCAGAGAAGATGAGTCATATCTCYACAGGAGGTGGT
GCTAGCTTGGAACTACTTGAA
Sequences:
>MK003180_K0624 ID=MK003180_K0624; Name=MK003180 K0624; organism=Daucus carota; type=genetic_marker
AGAAAGTAGGACTCGCAGAGAAGATGAGTCATATCTCYACAGGAGGTGGT
GCTAGCTTGGAACTACTTGAA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AGAAAGTAGGACTCGCAGAGAAGATGAGTCATATCTC
Three Prime Flanking Region:
ACAGGAGGTGGTGCTAGCTTGGAACTACTTGAA
SNP:
C/T