MK003180 K0624

Resource Type: 
Genetic Marker
Name: 
MK003180 K0624
Identifier: 
MK003180_K0624
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK003180 K0624, is adjacent to primer, K0624_X.
The genetic_marker, MK003180 K0624, is adjacent to primer, K0624_Y.
The genetic_marker, MK003180 K0624, is adjacent to primer, K0624_Common.
The genetic_marker, MK003180 K0624, is located in gene, DCAR_016838.
The genetic_marker, MK003180 K0624, is located in gene, LOC108219759.
The marker_locus, K0624, is an instance of genetic_marker, MK003180 K0624.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG full mapCH521.764K0624MapViewer
2015 MB MergedChr515.769K0624MapViewer
2014 J.Parsons Th. Fig_4.4F2_Chr514.226K0624MapViewer
2015 Br1091×HM1Chr512.762K0624MapViewer
2014 J.Parsons Th. Br1091×HM1Chr512.762K0624MapViewer
2016 70349 NG full mapChr547.229K0624MapViewer
2016 Integ NG bin mapCH521.243K0624MapViewer
2014 J.Parsons Th. Fig_3.5Chr515.769K0624MapViewer
2014 J.Parsons Th. Fig_2.4Chr515.769K0624MapViewer
2016 80592 NG bin mapChr512.762K0624MapViewer
2016 80592 NG full mapChr512.762K0624MapViewer
2014 J.Parsons Th. SFF×HM2Chr518.759K0624MapViewer
2014 70349Chromosome_547.229K0624MapViewer
2015 SFF×HM2Chr518.759K0624MapViewer
Synonyms: 
  • MK003180
Sequence Coordinates: 
DCARv2_Chr5:8193326..8193372+
View location in JBrowse: 
Sequence: 
AGAAAGTAGGACTCGCAGAGAAGATGAGTCATATCTCYACAGGAGGTGGT
GCTAGCTTGGAACTACTTGAA
Sequences: 
>MK003180_K0624 ID=MK003180_K0624; Name=MK003180 K0624; organism=Daucus carota; type=genetic_marker
AGAAAGTAGGACTCGCAGAGAAGATGAGTCATATCTCYACAGGAGGTGGT
GCTAGCTTGGAACTACTTGAA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AGAAAGTAGGACTCGCAGAGAAGATGAGTCATATCTC
Three Prime Flanking Region: 
ACAGGAGGTGGTGCTAGCTTGGAACTACTTGAA
SNP: 
C/T