MK003342 K0786 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK003342 K0786

Identifier:

MK003342_K0786

Organism:

Daucus carota subspecies sativus

Marker Type:

SNP

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison

Relationship:

There are 6 relationships.
Relationships
The genetic_marker, MK003342 K0786, is adjacent to primer, K0786_X.
The genetic_marker, MK003342 K0786, is adjacent to primer, K0786_Y.
The genetic_marker, MK003342 K0786, is adjacent to primer, K0786_Common.
The genetic_marker, MK003342 K0786, is located in gene, DCAR_001483.
The genetic_marker, MK003342 K0786, is located in gene, LOC108204783.
The marker_locus, K0786, is an instance of genetic_marker, MK003342 K0786.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 70796 NG full map	Chr1	19.01	K0786	MapViewer
2014 J.Parsons Th. Br1091×HM1	Chr1	40.304	K0786	MapViewer
2014 70349	Chromosome_1	38.377	K0786	MapViewer
2016 70796 NG bin map	Chr1	19.01	K0786	MapViewer
2016 80592 NG bin map	Chr1	40.304	K0786	MapViewer
2016 70349 NG full map	Chr1	38.377	K0786	MapViewer
2015 Br1091×HM1	Chr1	40.304	K0786	MapViewer
2016 Integ NG full map	CH1	36.763	K0786	MapViewer
2015 MB Merged	Chr1	35.599	K0786	MapViewer
2014 J.Parsons Th. Fig_2.4	Chr1	35.599	K0786	MapViewer
2016 Integ NG bin map	CH1	36.061	K0786	MapViewer
2014 J.Parsons Th. Fig_3.5	Chr1	35.599	K0786	MapViewer
2016 70349 NG bin map	Chr1	38.377	K0786	MapViewer
2016 80592 NG full map	Chr1	40.304	K0786	MapViewer

Synonyms:

MK003342

Sequence Coordinates:

DCARv2_Chr1:15914606..15914656-

View location in JBrowse:

DCARv2_Chr1:15914606..15914656-

Sequence:

AGTCAGACTCTGAGTCAGGAAAGACAGAACTTGATTTRACATTCGTACTA
GACAGGATATTTGAAGGAGTT

Sequences:

Primary genetic marker Sequence (71bp)

>MK003342_K0786 ID=MK003342_K0786; Name=MK003342 K0786; organism=Daucus carota; type=genetic_marker
AGTCAGACTCTGAGTCAGGAAAGACAGAACTTGATTTRACATTCGTACTA
GACAGGATATTTGAAGGAGTT

This is the primary representative sequence for this feature.

Sequence Length:

Five Prime Flanking Region:

AGTCAGACTCTGAGTCAGGAAAGACAGAACTTGATTT

Three Prime Flanking Region:

ACATTCGTACTAGACAGGATATTTGAAGGAGTT

SNP:

A/G