Resource Type:
Genetic Marker
Name:
MK004106 K1550
Identifier:
MK004106_K1550
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004106 K1550, is adjacent to primer, K1550_X. |
| The genetic_marker, MK004106 K1550, is adjacent to primer, K1550_Y. |
| The genetic_marker, MK004106 K1550, is adjacent to primer, K1550_Common. |
| The genetic_marker, MK004106 K1550, is located in gene, DCAR_016260. |
| The genetic_marker, MK004106 K1550, is located in gene, LOC108220234. |
| The marker_locus, K1550, is an instance of genetic_marker, MK004106 K1550. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1 | Chr5 | 0 | K1550 | MapViewer |
| 2015 Br1091×HM1 | Chr5 | 0 | K1550 | MapViewer |
| 2016 70796 NG full map | Chr5 | 67.653 | K1550 | MapViewer |
| 2015 MB Merged | Chr5 | 2.101 | K1550 | MapViewer |
| 2016 Integ NG bin map | CH5 | 6.338 | K1550 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr5 | 2.101 | K1550 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr5 | 2.101 | K1550 | MapViewer |
| 2016 Integ NG full map | CH5 | 7.525 | K1550 | MapViewer |
| 2016 80592 NG bin map | Chr5 | 0 | K1550 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr5 | 1.464 | K1550 | MapViewer |
| 2016 80592 NG full map | Chr5 | 0 | K1550 | MapViewer |
Synonyms:
- MK004106
Sequence Coordinates:
DCARv2_Chr5:1728760..1728806-
View location in JBrowse:
Sequence:
ATCAGCAYATACTAGACTACTTAGGTTGCGGTTACCCKCATCCAACCAGA
AGATCCATCAAAGAGGTTTRG
Sequences:
>MK004106_K1550 ID=MK004106_K1550; Name=MK004106 K1550; organism=Daucus carota; type=genetic_marker
ATCAGCAYATACTAGACTACTTAGGTTGCGGTTACCCKCATCCAACCAGA
AGATCCATCAAAGAGGTTTRG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ATCAGCAYATACTAGACTACTTAGGTTGCGGTTACCC
Three Prime Flanking Region:
CATCCAACCAGAAGATCCATCAAAGAGGTTTRG
SNP:
G/T