Resource Type:
Genetic Marker
Name:
MK004118 K1562
Identifier:
MK004118_K1562
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004118 K1562, is adjacent to primer, K1562_X. |
| The genetic_marker, MK004118 K1562, is adjacent to primer, K1562_Y. |
| The genetic_marker, MK004118 K1562, is adjacent to primer, K1562_Common. |
| The genetic_marker, MK004118 K1562, is located in gene, DCAR_012579. |
| The genetic_marker, MK004118 K1562, is located in gene, LOC108214161. |
| The marker_locus, K1562, is an instance of genetic_marker, MK004118 K1562. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG full map | Chr3 | 3.93 | K1562 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr3 | 61.664 | K1562 | MapViewer |
| 2016 70349 NG bin map | Chr3 | 3.93 | K1562 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr3 | 61.664 | K1562 | MapViewer |
| 2015 MB Merged | Chr3 | 61.664 | K1562 | MapViewer |
| 2016 Integ NG bin map | CH3 | 77.811 | K1562 | MapViewer |
| 2014 70349 | Chromosome_3 | 3.93 | K1562 | MapViewer |
| 2016 80592 NG bin map | Chr3 | 63.646 | K1562 | MapViewer |
| 2016 Integ NG full map | CH3 | 74.806 | K1562 | MapViewer |
| 2016 80592 NG full map | Chr3 | 63.646 | K1562 | MapViewer |
| 2015 Br1091×HM1 | Chr3 | 63.646 | K1562 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr3 | 63.646 | K1562 | MapViewer |
Synonyms:
- MK004118
Sequence Coordinates:
DCARv2_Chr3:48589631..48589682-
View location in JBrowse:
Sequence:
ACTGGTGGCGCAATGAGCAATTTTGGGTAATTGGTGGWGTATCAGCTCAT
CTTTTTGCAGTGTTCCAGGGG
Sequences:
>MK004118_K1562 ID=MK004118_K1562; Name=MK004118 K1562; organism=Daucus carota; type=genetic_marker
ACTGGTGGCGCAATGAGCAATTTTGGGTAATTGGTGGWGTATCAGCTCAT
CTTTTTGCAGTGTTCCAGGGG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ACTGGTGGCGCAATGAGCAATTTTGGGTAATTGGTGG
Three Prime Flanking Region:
GTATCAGCTCATCTTTTTGCAGTGTTCCAGGGG
SNP:
A/T