Resource Type:
Genetic Marker
Name:
MK004175 K1619
Identifier:
MK004175_K1619
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004175 K1619, is adjacent to primer, K1619_X. |
| The genetic_marker, MK004175 K1619, is adjacent to primer, K1619_Y. |
| The genetic_marker, MK004175 K1619, is adjacent to primer, K1619_Common. |
| The genetic_marker, MK004175 K1619, is located in gene, DCAR_029271. |
| The genetic_marker, MK004175 K1619, is located in gene, LOC108200357. |
| The marker_locus, K1619, is an instance of genetic_marker, MK004175 K1619. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. HM3 | Chr9 | 17.719 | K1619 | MapViewer |
| 2016 70796 NG full map | Chr9 | 9.025 | K1619 | MapViewer |
| 2016 Integ NG bin map | CH9 | 9.523 | K1619 | MapViewer |
| 2015 HM3 | Chr9 | 17.719 | K1619 | MapViewer |
| 2016 Integ NG full map | CH9 | 7.74 | K1619 | MapViewer |
| 2016 70796 NG bin map | Chr9 | 9.025 | K1619 | MapViewer |
Synonyms:
- MK004175
Sequence Coordinates:
DCARv2_Chr9:4202460..4202511-
View location in JBrowse:
Sequence:
TTTAATGCTTGATGCACAAGTATAGAACTACGATATCYGGGTGTACTTTT
GCCGATATGATCGTGGWCACT
Sequences:
>MK004175_K1619 ID=MK004175_K1619; Name=MK004175 K1619; organism=Daucus carota; type=genetic_marker
TTTAATGCTTGATGCACAAGTATAGAACTACGATATCYGGGTGTACTTTT
GCCGATATGATCGTGGWCACT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TTTAATGCTTGATGCACAAGTATAGAACTACGATATC
Three Prime Flanking Region:
GGGTGTACTTTTGCCGATATGATCGTGGWCACT
SNP:
C/T