MK004195 K1639

Resource Type: 
Genetic Marker
Name: 
MK004195 K1639
Identifier: 
MK004195_K1639
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  3. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004195 K1639, is adjacent to primer, K1639_X.
The genetic_marker, MK004195 K1639, is adjacent to primer, K1639_Y.
The genetic_marker, MK004195 K1639, is adjacent to primer, K1639_Common.
The genetic_marker, MK004195 K1639, is located in gene, DCAR_016871.
The genetic_marker, MK004195 K1639, is located in gene, LOC108222887.
The marker_locus, K1639, is an instance of genetic_marker, MK004195 K1639.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2015 Br1091×HM1Chr513.219K1639MapViewer
2014 J.Parsons Th. Fig_4.4F2_Chr514.683K1639MapViewer
2014 J.Parsons Th. Br1091×HM1Chr513.219K1639MapViewer
2016 80592 NG full mapChr513.219K1639MapViewer
2014 J.Parsons Th. Fig_2.4Chr516.016K1639MapViewer
2015 MB MergedChr516.016K1639MapViewer
2016 80592 NG bin mapChr513.219K1639MapViewer
2016 Integ NG full mapCH522.274K1639MapViewer
2014 J.Parsons Th. Fig_3.5Chr516.016K1639MapViewer
2014 J.Parsons Th. SFF×HM2Chr518.759K1639MapViewer
2015 SFF×HM2Chr518.759K1639MapViewer
Synonyms: 
  • MK004195
Sequence Coordinates: 
DCARv2_Chr5:8590176..8590225-
View location in JBrowse: 
Sequence: 
CCTTCACRTAAATGAGCCGAAATTTCTCTCGAAGTAGSGTTCGATACATC
TCCATTTTCTTTCTCAGGAAC
Sequences: 
>MK004195_K1639 ID=MK004195_K1639; Name=MK004195 K1639; organism=Daucus carota; type=genetic_marker
CCTTCACRTAAATGAGCCGAAATTTCTCTCGAAGTAGSGTTCGATACATC
TCCATTTTCTTTCTCAGGAAC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CCTTCACRTAAATGAGCCGAAATTTCTCTCGAAGTAG
Three Prime Flanking Region: 
GTTCGATACATCTCCATTTTCTTTCTCAGGAAC
SNP: 
C/G