Resource Type:
Genetic Marker
Name:
MK004289 K1733
Identifier:
MK004289_K1733
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
Relationships |
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The genetic_marker, MK004289 K1733, is adjacent to primer, K1733_X. |
The genetic_marker, MK004289 K1733, is adjacent to primer, K1733_Y. |
The genetic_marker, MK004289 K1733, is adjacent to primer, K1733_Common. |
The genetic_marker, MK004289 K1733, is located in gene, LOC108202874. |
The marker_locus, K1733, is an instance of genetic_marker, MK004289 K1733. |

MapViewer Marker Map Positions:
Map Name | Linkage Group | Position | Locus | MapViewer |
---|---|---|---|---|
2015 MB Merged | Chr9 | 40.425 | K1733 | MapViewer |
2016 Integ NG bin map | CH9 | 40.44 | K1733 | MapViewer |
2016 70349 NG full map | Chr9 | 47.789 | K1733 | MapViewer |
2014 J.Parsons Th. Fig_3.5 | Chr9 | 40.425 | K1733 | MapViewer |
2016 70796 NG full map | Chr9 | 42.888 | K1733 | MapViewer |
2016 Integ NG full map | CH9 | 37.947 | K1733 | MapViewer |
2015 Br1091×HM1 | Chr9 | 35.847 | K1733 | MapViewer |
2016 80592 NG full map | Chr9 | 35.847 | K1733 | MapViewer |
2014 70349 | Chromosome_9 | 47.789 | K1733 | MapViewer |
2016 80592 NG bin map | Chr9 | 35.847 | K1733 | MapViewer |
2014 J.Parsons Th. Br1091×HM1 | Chr9 | 35.847 | K1733 | MapViewer |
2014 J.Parsons Th. Fig_2.4 | Chr9 | 40.425 | K1733 | MapViewer |
Synonyms:
- MK004289
Sequence Coordinates:
DCARv2_Chr9:25241636..25241689+
View location in JBrowse:
Sequence:
GTTTTAACTTCTTCTTCATCTTCTTCTCTTGAGATTCMAGCTCTTTCTCT
TTCTCTTTGACTCCACCACAC
Sequences:
>MK004289_K1733 ID=MK004289_K1733; Name=MK004289 K1733; organism=Daucus carota; type=genetic_marker
GTTTTAACTTCTTCTTCATCTTCTTCTCTTGAGATTCMAGCTCTTTCTCT
TTCTCTTTGACTCCACCACAC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
GTTTTAACTTCTTCTTCATCTTCTTCTCTTGAGATTC
Three Prime Flanking Region:
AGCTCTTTCTCTTTCTCTTTGACTCCACCACAC
SNP:
A/C