MK004400 K1844

Resource Type: 
Genetic Marker
Name: 
MK004400 K1844
Identifier: 
MK004400_K1844
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004400 K1844, is adjacent to primer, K1844_X.
The genetic_marker, MK004400 K1844, is adjacent to primer, K1844_Y.
The genetic_marker, MK004400 K1844, is adjacent to primer, K1844_Common.
The genetic_marker, MK004400 K1844, is located in gene, DCAR_026513.
The genetic_marker, MK004400 K1844, is located in gene, LOC108200078.
The marker_locus, K1844, is an instance of genetic_marker, MK004400 K1844.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG full mapCH864.787K1844MapViewer
2014 J.Parsons Th. Fig_3.5Chr857.291K1844MapViewer
2015 Br1091×HM1Chr80.856K1844MapViewer
2014 70349Chromosome_80.083K1844MapViewer
2016 80592 NG bin mapChr80.856K1844MapViewer
2016 Integ NG bin mapCH859.394K1844MapViewer
2016 70349 NG full mapChr80.083K1844MapViewer
2015 MB MergedChr857.291K1844MapViewer
2014 J.Parsons Th. Fig_2.4Chr857.291K1844MapViewer
2016 70796 NG full mapChr80.875K1844MapViewer
2016 80592 NG full mapChr80.856K1844MapViewer
2016 70796 NG bin mapChr80.875K1844MapViewer
2014 J.Parsons Th. Br1091×HM1Chr80.856K1844MapViewer
Synonyms: 
  • MK004400
Sequence Coordinates: 
DCARv2_Chr8:31160929..31160977-
View location in JBrowse: 
Sequence: 
TGGGTTCAGGGGCTTTGACTCTAAGGCAGGCAGTGGTRACTGCTGCAGTT
CTGGAGTTTTCGGGGGCCCTT
Sequences: 
>MK004400_K1844 ID=MK004400_K1844; Name=MK004400 K1844; organism=Daucus carota; type=genetic_marker
TGGGTTCAGGGGCTTTGACTCTAAGGCAGGCAGTGGTRACTGCTGCAGTT
CTGGAGTTTTCGGGGGCCCTT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TGGGTTCAGGGGCTTTGACTCTAAGGCAGGCAGTGGT
Three Prime Flanking Region: 
ACTGCTGCAGTTCTGGAGTTTTCGGGGGCCCTT
SNP: 
A/G