Resource Type:
Genetic Marker
Name:
MK004508 K1952
Identifier:
MK004508_K1952
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004508 K1952, is adjacent to primer, K1952_X. |
| The genetic_marker, MK004508 K1952, is adjacent to primer, K1952_Y. |
| The genetic_marker, MK004508 K1952, is adjacent to primer, K1952_Common. |
| The genetic_marker, MK004508 K1952, is located in gene, DCAR_030836. |
| The genetic_marker, MK004508 K1952, is located in gene, LOC108200617. |
| The marker_locus, K1952, is an instance of genetic_marker, MK004508 K1952. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_3.5 | Chr9 | 46.668 | K1952 | MapViewer |
| 2015 MB Merged | Chr9 | 46.668 | K1952 | MapViewer |
| 2016 Integ NG bin map | CH9 | 45.329 | K1952 | MapViewer |
| 2016 Integ NG full map | CH9 | 44.185 | K1952 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr9 | 46.668 | K1952 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr9 | 48.546 | K1952 | MapViewer |
| 2015 SFF×HM2 | Chr9 | 48.546 | K1952 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr9 | 41.566 | K1952 | MapViewer |
| 2016 70796 NG full map | Chr9 | 49.791 | K1952 | MapViewer |
| 2015 Br1091×HM1 | Chr9 | 41.566 | K1952 | MapViewer |
| 2016 80592 NG full map | Chr9 | 41.566 | K1952 | MapViewer |
Synonyms:
- MK004508
Sequence Coordinates:
DCARv2_Chr9:30303663..30303716+
View location in JBrowse:
Sequence:
CTACCACTGTCACATACTTGGAGAAAAAACGATGTGTRGAACCTAGTGCC
ACCACCGCAGAGCTACTTCTC
Sequences:
>MK004508_K1952 ID=MK004508_K1952; Name=MK004508 K1952; organism=Daucus carota; type=genetic_marker
CTACCACTGTCACATACTTGGAGAAAAAACGATGTGTRGAACCTAGTGCC
ACCACCGCAGAGCTACTTCTC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CTACCACTGTCACATACTTGGAGAAAAAACGATGTGT
Three Prime Flanking Region:
GAACCTAGTGCCACCACCGCAGAGCTACTTCTC
SNP:
A/G