Resource Type:
Genetic Marker
Name:
MK004636 K2080
Identifier:
MK004636_K2080
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004636 K2080, is adjacent to primer, K2080_X. |
| The genetic_marker, MK004636 K2080, is adjacent to primer, K2080_Y. |
| The genetic_marker, MK004636 K2080, is adjacent to primer, K2080_Common. |
| The genetic_marker, MK004636 K2080, is located in gene, DCAR_024524. |
| The genetic_marker, MK004636 K2080, is located in gene, LOC108196934. |
| The marker_locus, K2080, is an instance of genetic_marker, MK004636 K2080. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2015 MB Merged | Chr7 | 25.619 | K2080 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr7 | 22.31 | K2080 | MapViewer |
| 2016 80592 NG bin map | Chr7 | 22.31 | K2080 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr7 | 25.619 | K2080 | MapViewer |
| 2016 80592 NG full map | Chr7 | 22.31 | K2080 | MapViewer |
| 2015 Br1091×HM1 | Chr7 | 22.31 | K2080 | MapViewer |
| 2016 Integ NG full map | CH7 | 30.504 | K2080 | MapViewer |
| 2016 Integ NG bin map | CH7 | 31.89 | K2080 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr7 | 25.619 | K2080 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr7 | 25.619 | K2080 | MapViewer |
Synonyms:
- MK004636
Sequence Coordinates:
DCARv2_Chr7:15415090..15415168+
View location in JBrowse:
Sequence:
CCGAAATGACCACTCACGGCAACAGGCCTAAGTGCCCSTGATTAAATATC
TTGGCATATATATAATCACCA
Sequences:
>MK004636_K2080 ID=MK004636_K2080; Name=MK004636 K2080; organism=Daucus carota; type=genetic_marker
CCGAAATGACCACTCACGGCAACAGGCCTAAGTGCCCSTGATTAAATATC
TTGGCATATATATAATCACCA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CCGAAATGACCACTCACGGCAACAGGCCTAAGTGCCC
Three Prime Flanking Region:
TGATTAAATATCTTGGCATATATATAATCACCA
SNP:
C/G