Resource Type:
Genetic Marker
Name:
MK004847 K2291
Identifier:
MK004847_K2291
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004847 K2291, is adjacent to primer, K2291_X. |
| The genetic_marker, MK004847 K2291, is adjacent to primer, K2291_Y. |
| The genetic_marker, MK004847 K2291, is adjacent to primer, K2291_Common. |
| The genetic_marker, MK004847 K2291, is located in gene, LOC108204502. |
| The marker_locus, K2291, is an instance of genetic_marker, MK004847 K2291. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 33.074 | K2291 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr1 | 42.903 | K2291 | MapViewer |
| 2016 80592 NG full map | Chr1 | 33.074 | K2291 | MapViewer |
| 2015 MB Merged | Chr1 | 42.903 | K2291 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr1 | 42.903 | K2291 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 33.074 | K2291 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 33.074 | K2291 | MapViewer |
| 2016 Integ NG full map | CH1 | 42.437 | K2291 | MapViewer |
Synonyms:
- MK004847
Sequence Coordinates:
DCARv2_Chr1:21524056..21524110+
View location in JBrowse:
Sequence:
GACGTAAACATGATGGCGAGACCTCTGGTGAATGCAGYCGCAATAGAAAA
TCTAGTTCTCGTCTTACGAAC
Sequences:
>MK004847_K2291 ID=MK004847_K2291; Name=MK004847 K2291; organism=Daucus carota; type=genetic_marker
GACGTAAACATGATGGCGAGACCTCTGGTGAATGCAGYCGCAATAGAAAA
TCTAGTTCTCGTCTTACGAAC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
GACGTAAACATGATGGCGAGACCTCTGGTGAATGCAG
Three Prime Flanking Region:
CGCAATAGAAAATCTAGTTCTCGTCTTACGAAC
SNP:
C/T