MK004997 K2441 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK004997 K2441

Identifier:

MK004997_K2441

Organism:

Daucus carota subspecies sativus

Marker Type:

SNP

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK004997 K2441, is adjacent to primer, K2441_X.
The genetic_marker, MK004997 K2441, is adjacent to primer, K2441_Y.
The genetic_marker, MK004997 K2441, is adjacent to primer, K2441_Common.
The genetic_marker, MK004997 K2441, is located in gene, LOC108197396.
The marker_locus, K2441, is an instance of genetic_marker, MK004997 K2441.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 Integ NG bin map	CH1	42.461	K2441	MapViewer
2016 Integ NG full map	CH1	42.314	K2441	MapViewer
2014 J.Parsons Th. Fig_3.5	Chr1	42.231	K2441	MapViewer
2014 J.Parsons Th. Br1091×HM1	Chr1	33.659	K2441	MapViewer
2016 80592 NG full map	Chr1	33.659	K2441	MapViewer
2015 MB Merged	Chr1	42.231	K2441	MapViewer
2015 Br1091×HM1	Chr1	33.659	K2441	MapViewer
2014 J.Parsons Th. Fig_2.4	Chr1	42.231	K2441	MapViewer
2016 80592 NG bin map	Chr1	33.659	K2441	MapViewer
2016 70796 NG full map	Chr1	22.756	K2441	MapViewer

Synonyms:

MK004997

Sequence Coordinates:

DCARv2_Chr1:20305440..20305492-

View location in JBrowse:

DCARv2_Chr1:20305440..20305492-

Sequence:

TTGTTMGAAATGAAAAGAGGGGTTGGAGAAGATTTGTKAATCAGAGTTCT
TGAAACTGAAAAAGGTGAGAT

Sequences:

Primary genetic marker Sequence (71bp)

>MK004997_K2441 ID=MK004997_K2441; Name=MK004997 K2441; organism=Daucus carota; type=genetic_marker
TTGTTMGAAATGAAAAGAGGGGTTGGAGAAGATTTGTKAATCAGAGTTCT
TGAAACTGAAAAAGGTGAGAT

This is the primary representative sequence for this feature.

Sequence Length:

Five Prime Flanking Region:

TTGTTMGAAATGAAAAGAGGGGTTGGAGAAGATTTGT

Three Prime Flanking Region:

AATCAGAGTTCTTGAAACTGAAAAAGGTGAGAT

SNP:

G/T