MK005178 K2622

Resource Type: 
Genetic Marker
Name: 
MK005178 K2622
Identifier: 
MK005178_K2622
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  3. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005178 K2622, is adjacent to primer, K2622_X.
The genetic_marker, MK005178 K2622, is adjacent to primer, K2622_Y.
The genetic_marker, MK005178 K2622, is adjacent to primer, K2622_Common.
The genetic_marker, MK005178 K2622, is located in gene, DCAR_017165.
The genetic_marker, MK005178 K2622, is located in gene, LOC108223840.
The marker_locus, K2622, is an instance of genetic_marker, MK005178 K2622.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2015 MB MergedChr521.827K2622MapViewer
2016 Integ NG full mapCH529.47K2622MapViewer
2014 J.Parsons Th. Fig_4.4F2_Chr520.616K2622MapViewer
2016 80592 NG full mapChr519.152K2622MapViewer
2015 SFF×HM2Chr525.992K2622MapViewer
2015 Br1091×HM1Chr519.152K2622MapViewer
2016 80592 NG bin mapChr519.152K2622MapViewer
2016 Integ NG bin mapCH528.303K2622MapViewer
2014 J.Parsons Th. Fig_2.4Chr521.827K2622MapViewer
2014 J.Parsons Th. SFF×HM2Chr525.992K2622MapViewer
2014 J.Parsons Th. Fig_3.5Chr521.827K2622MapViewer
2014 J.Parsons Th. Br1091×HM1Chr519.152K2622MapViewer
Synonyms: 
  • MK005178
Sequence Coordinates: 
DCARv2_Chr5:12184139..12184187-
View location in JBrowse: 
Sequence: 
TGCGGCGAGCAAAGGCTGAGGTTATAGTAGCATCTGTYGAAGACACTCTA
GAGACTGTAGCTACWCGTAAA
Sequences: 
>MK005178_K2622 ID=MK005178_K2622; Name=MK005178 K2622; organism=Daucus carota; type=genetic_marker
TGCGGCGAGCAAAGGCTGAGGTTATAGTAGCATCTGTYGAAGACACTCTA
GAGACTGTAGCTACWCGTAAA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TGCGGCGAGCAAAGGCTGAGGTTATAGTAGCATCTGT
Three Prime Flanking Region: 
GAAGACACTCTAGAGACTGTAGCTACWCGTAAA
SNP: 
C/T