MK005200 K2644

Resource Type: 
Genetic Marker
Name: 
MK005200 K2644
Identifier: 
MK005200_K2644
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005200 K2644, is adjacent to primer, K2644_X.
The genetic_marker, MK005200 K2644, is adjacent to primer, K2644_Y.
The genetic_marker, MK005200 K2644, is adjacent to primer, K2644_Common.
The genetic_marker, MK005200 K2644, is adjacent to gene, DCAR_030532.
The genetic_marker, MK005200 K2644, is located in gene, LOC108200517.
The marker_locus, K2644, is an instance of genetic_marker, MK005200 K2644.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 J.Parsons Th. Br1091×HM1Chr936.944K2644MapViewer
2016 70796 NG bin mapChr944.278K2644MapViewer
2016 Integ NG full mapCH939.028K2644MapViewer
2016 70349 NG full mapChr948.191K2644MapViewer
2016 Integ NG bin mapCH941.217K2644MapViewer
2016 70796 NG full mapChr944.278K2644MapViewer
2015 MB MergedChr941.509K2644MapViewer
2016 80592 NG bin mapChr936.944K2644MapViewer
2014 70349Chromosome_948.191K2644MapViewer
2015 Br1091×HM1Chr936.944K2644MapViewer
2014 J.Parsons Th. Fig_3.5Chr941.509K2644MapViewer
2016 80592 NG full mapChr936.944K2644MapViewer
2014 J.Parsons Th. Fig_2.4Chr941.509K2644MapViewer
Synonyms: 
  • MK005200
Sequence Coordinates: 
DCARv2_Chr9:26366429..26366475+
View location in JBrowse: 
Sequence: 
CTGTCTGAACCAACTGAGTGAGTTTGAAGATGGGTCARGAATCGTTCATT
TACAGCTTTGTGGCRCGAGGT
Sequences: 
>MK005200_K2644 ID=MK005200_K2644; Name=MK005200 K2644; organism=Daucus carota; type=genetic_marker
CTGTCTGAACCAACTGAGTGAGTTTGAAGATGGGTCARGAATCGTTCATT
TACAGCTTTGTGGCRCGAGGT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CTGTCTGAACCAACTGAGTGAGTTTGAAGATGGGTCA
Three Prime Flanking Region: 
GAATCGTTCATTTACAGCTTTGTGGCRCGAGGT
SNP: 
A/G