Resource Type:
Genetic Marker
Name:
MK005200 K2644
Identifier:
MK005200_K2644
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
Relationships |
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The genetic_marker, MK005200 K2644, is adjacent to primer, K2644_X. |
The genetic_marker, MK005200 K2644, is adjacent to primer, K2644_Y. |
The genetic_marker, MK005200 K2644, is adjacent to primer, K2644_Common. |
The genetic_marker, MK005200 K2644, is adjacent to gene, DCAR_030532. |
The genetic_marker, MK005200 K2644, is located in gene, LOC108200517. |
The marker_locus, K2644, is an instance of genetic_marker, MK005200 K2644. |

MapViewer Marker Map Positions:
Map Name | Linkage Group | Position | Locus | MapViewer |
---|---|---|---|---|
2014 J.Parsons Th. Br1091×HM1 | Chr9 | 36.944 | K2644 | MapViewer |
2016 70796 NG bin map | Chr9 | 44.278 | K2644 | MapViewer |
2016 Integ NG full map | CH9 | 39.028 | K2644 | MapViewer |
2016 70349 NG full map | Chr9 | 48.191 | K2644 | MapViewer |
2016 Integ NG bin map | CH9 | 41.217 | K2644 | MapViewer |
2016 70796 NG full map | Chr9 | 44.278 | K2644 | MapViewer |
2015 MB Merged | Chr9 | 41.509 | K2644 | MapViewer |
2016 80592 NG bin map | Chr9 | 36.944 | K2644 | MapViewer |
2014 70349 | Chromosome_9 | 48.191 | K2644 | MapViewer |
2015 Br1091×HM1 | Chr9 | 36.944 | K2644 | MapViewer |
2014 J.Parsons Th. Fig_3.5 | Chr9 | 41.509 | K2644 | MapViewer |
2016 80592 NG full map | Chr9 | 36.944 | K2644 | MapViewer |
2014 J.Parsons Th. Fig_2.4 | Chr9 | 41.509 | K2644 | MapViewer |
Synonyms:
- MK005200
Sequence Coordinates:
DCARv2_Chr9:26366429..26366475+
View location in JBrowse:
Sequence:
CTGTCTGAACCAACTGAGTGAGTTTGAAGATGGGTCARGAATCGTTCATT
TACAGCTTTGTGGCRCGAGGT
Sequences:
>MK005200_K2644 ID=MK005200_K2644; Name=MK005200 K2644; organism=Daucus carota; type=genetic_marker
CTGTCTGAACCAACTGAGTGAGTTTGAAGATGGGTCARGAATCGTTCATT
TACAGCTTTGTGGCRCGAGGT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CTGTCTGAACCAACTGAGTGAGTTTGAAGATGGGTCA
Three Prime Flanking Region:
GAATCGTTCATTTACAGCTTTGTGGCRCGAGGT
SNP:
A/G