Resource Type:
Genetic Marker
Name:
MK005378 K2822
Identifier:
MK005378_K2822
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005378 K2822, is adjacent to primer, K2822_X. |
| The genetic_marker, MK005378 K2822, is adjacent to primer, K2822_Y. |
| The genetic_marker, MK005378 K2822, is adjacent to primer, K2822_Common. |
| The genetic_marker, MK005378 K2822, is located in gene, DCAR_000589. |
| The genetic_marker, MK005378 K2822, is located in gene, LOC108204520. |
| The marker_locus, K2822, is an instance of genetic_marker, MK005378 K2822. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_2.4 | Chr1 | 2.089 | K2822 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 73.312 | K2822 | MapViewer |
| 2015 MB Merged | Chr1 | 2.089 | K2822 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr1 | 2.089 | K2822 | MapViewer |
| 2016 Integ NG bin map | CH1 | 3.417 | K2822 | MapViewer |
| 2016 80592 NG full map | Chr1 | 73.312 | K2822 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 73.312 | K2822 | MapViewer |
| 2015 SFF×HM2 | Chr1 | 0 | K2822 | MapViewer |
| 2016 Integ NG full map | CH1 | 2.739 | K2822 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 73.312 | K2822 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr1 | 0 | K2822 | MapViewer |
Synonyms:
- MK005378
Sequence Coordinates:
DCARv2_Chr1:673185..673245-
View location in JBrowse:
Sequence:
CAACTAACACAAGTTTGGATCCATCTTTAACACCAGCMCCATCAAGAAAT
GTTCTTGATTCTCTTTCYTTA
Sequences:
>MK005378_K2822 ID=MK005378_K2822; Name=MK005378 K2822; organism=Daucus carota; type=genetic_marker
CAACTAACACAAGTTTGGATCCATCTTTAACACCAGCMCCATCAAGAAAT
GTTCTTGATTCTCTTTCYTTA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CAACTAACACAAGTTTGGATCCATCTTTAACACCAGC
Three Prime Flanking Region:
CCATCAAGAAATGTTCTTGATTCTCTTTCYTTA
SNP:
A/C