Resource Type:
Genetic Marker
Name:
MK005393 K2837
Identifier:
MK005393_K2837
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005393 K2837, is adjacent to primer, K2837_X. |
| The genetic_marker, MK005393 K2837, is adjacent to primer, K2837_Y. |
| The genetic_marker, MK005393 K2837, is adjacent to primer, K2837_Common. |
| The genetic_marker, MK005393 K2837, is located in gene, DCAR_016916. |
| The genetic_marker, MK005393 K2837, is located in gene, LOC108220066. |
| The marker_locus, K2837, is an instance of genetic_marker, MK005393 K2837. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2015 MB Merged | Chr5 | 16.456 | K2837 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr5 | 15.042 | K2837 | MapViewer |
| 2016 80592 NG bin map | Chr5 | 13.578 | K2837 | MapViewer |
| 2016 Integ NG full map | CH5 | 21.914 | K2837 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr5 | 19.249 | K2837 | MapViewer |
| 2016 Integ NG bin map | CH5 | 21.588 | K2837 | MapViewer |
| 2015 Br1091×HM1 | Chr5 | 13.578 | K2837 | MapViewer |
| 2016 70796 NG full map | Chr5 | 53.08 | K2837 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr5 | 16.456 | K2837 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr5 | 16.456 | K2837 | MapViewer |
| 2016 70796 NG bin map | Chr5 | 53.08 | K2837 | MapViewer |
| 2015 SFF×HM2 | Chr5 | 19.249 | K2837 | MapViewer |
| 2016 80592 NG full map | Chr5 | 13.578 | K2837 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr5 | 13.578 | K2837 | MapViewer |
Synonyms:
- MK005393
Sequence Coordinates:
DCARv2_Chr5:9123420..9123475+
View location in JBrowse:
Sequence:
TAATCGGGGGACCCCTTGCAGCAGTTATAGCAACACCRCTGACCCTTGTC
ACTACAAACGTGTATGGAATG
Sequences:
>MK005393_K2837 ID=MK005393_K2837; Name=MK005393 K2837; organism=Daucus carota; type=genetic_marker
TAATCGGGGGACCCCTTGCAGCAGTTATAGCAACACCRCTGACCCTTGTC
ACTACAAACGTGTATGGAATG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TAATCGGGGGACCCCTTGCAGCAGTTATAGCAACACC
Three Prime Flanking Region:
CTGACCCTTGTCACTACAAACGTGTATGGAATG
SNP:
A/G