MK005780 K3224 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK005780 K3224

Identifier:

MK005780_K3224

Organism:

Daucus carota subspecies sativus

Marker Type:

SNP

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison

Relationship:

There are 6 relationships.
Relationships
The genetic_marker, MK005780 K3224, is adjacent to primer, K3224_X.
The genetic_marker, MK005780 K3224, is adjacent to primer, K3224_Y.
The genetic_marker, MK005780 K3224, is adjacent to primer, K3224_Common.
The genetic_marker, MK005780 K3224, is located in gene, DCAR_026053.
The genetic_marker, MK005780 K3224, is located in gene, LOC108196463.
The marker_locus, K3224, is an instance of genetic_marker, MK005780 K3224.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 Integ NG full map	CH7	49.116	K3224	MapViewer
2016 80592 NG full map	Chr7	5.109	K3224	MapViewer
2015 MB Merged	Chr7	42.82	K3224	MapViewer
2014 J.Parsons Th. Br1091×HM1	Chr7	5.109	K3224	MapViewer
2014 J.Parsons Th. Fig_2.4	Chr7	42.82	K3224	MapViewer
2014 J.Parsons Th. Fig_3.5	Chr7	42.82	K3224	MapViewer
2014 J.Parsons Th. Fig_4.4	F2_Chr7	42.82	K3224	MapViewer
2016 80592 NG bin map	Chr7	5.109	K3224	MapViewer
2015 Br1091×HM1	Chr7	5.109	K3224	MapViewer
2016 Integ NG bin map	CH7	50.473	K3224	MapViewer

Synonyms:

MK005780

Sequence Coordinates:

DCARv2_Chr7:32741229..32741273+

View location in JBrowse:

DCARv2_Chr7:32741229..32741273+

Sequence:

GAGTCAGAGKCKGCCTTCTCAGGCAAGGACAGCAGGGYTGCTCTCCAAGC
CTCATTTGCTTGCAAAGCACA

Sequences:

Primary genetic marker Sequence (71bp)

>MK005780_K3224 ID=MK005780_K3224; Name=MK005780 K3224; organism=Daucus carota; type=genetic_marker
GAGTCAGAGKCKGCCTTCTCAGGCAAGGACAGCAGGGYTGCTCTCCAAGC
CTCATTTGCTTGCAAAGCACA

This is the primary representative sequence for this feature.

Sequence Length:

Five Prime Flanking Region:

GAGTCAGAGKCKGCCTTCTCAGGCAAGGACAGCAGGG

Three Prime Flanking Region:

TGCTCTCCAAGCCTCATTTGCTTGCAAAGCACA

SNP:

C/T