Resource Type:
Genetic Marker
Name:
MK005812 K3256
Identifier:
MK005812_K3256
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005812 K3256, is adjacent to primer, K3256_X. |
| The genetic_marker, MK005812 K3256, is adjacent to primer, K3256_Y. |
| The genetic_marker, MK005812 K3256, is adjacent to primer, K3256_Common. |
| The genetic_marker, MK005812 K3256, is located in gene, DCAR_025636. |
| The genetic_marker, MK005812 K3256, is located in gene, LOC108196918. |
| The marker_locus, K3256, is an instance of genetic_marker, MK005812 K3256. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr7 | 39.95 | K3256 | MapViewer |
| 2016 Integ NG full map | CH7 | 47.135 | K3256 | MapViewer |
| 2016 80592 NG full map | Chr7 | 7.979 | K3256 | MapViewer |
| 2015 Br1091×HM1 | Chr7 | 7.979 | K3256 | MapViewer |
| 2015 SFF×HM2 | Chr7 | 31.639 | K3256 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr7 | 31.639 | K3256 | MapViewer |
| 2016 70349 NG full map | Chr7 | 10.138 | K3256 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr7 | 7.979 | K3256 | MapViewer |
| 2015 MB Merged | Chr7 | 39.95 | K3256 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr7 | 39.95 | K3256 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr7 | 39.95 | K3256 | MapViewer |
| 2014 70349 | Chromosome_7 | 10.138 | K3256 | MapViewer |
Synonyms:
- MK005812
Sequence Coordinates:
DCARv2_Chr7:29201267..29201316+
View location in JBrowse:
Sequence:
TAATACTAGCTGCTGGTACAACTTTGAGAAGATTCGGRAAAAGTCCTTTG
TAGAAACCTCTTAAACCCTCA
Sequences:
>MK005812_K3256 ID=MK005812_K3256; Name=MK005812 K3256; organism=Daucus carota; type=genetic_marker
TAATACTAGCTGCTGGTACAACTTTGAGAAGATTCGGRAAAAGTCCTTTG
TAGAAACCTCTTAAACCCTCA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TAATACTAGCTGCTGGTACAACTTTGAGAAGATTCGG
Three Prime Flanking Region:
AAAAGTCCTTTGTAGAAACCTCTTAAACCCTCA
SNP:
A/G