Resource Type:
Genetic Marker
Name:
MK005867 K3311
Identifier:
MK005867_K3311
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005867 K3311, is adjacent to primer, K3311_X. |
| The genetic_marker, MK005867 K3311, is adjacent to primer, K3311_Y. |
| The genetic_marker, MK005867 K3311, is adjacent to primer, K3311_Common. |
| The genetic_marker, MK005867 K3311, is located in gene, DCAR_018470. |
| The genetic_marker, MK005867 K3311, is adjacent to gene, LOC108223016. |
| The marker_locus, K3311, is an instance of genetic_marker, MK005867 K3311. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2015 MB Merged | Chr5 | 39.244 | K3311 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr5 | 39.244 | K3311 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr5 | 39.244 | K3311 | MapViewer |
| 2016 80592 NG full map | Chr5 | 37.192 | K3311 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr5 | 37.192 | K3311 | MapViewer |
| 2016 80592 NG bin map | Chr5 | 37.192 | K3311 | MapViewer |
| 2016 70796 NG full map | Chr5 | 17.915 | K3311 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr5 | 38.656 | K3311 | MapViewer |
| 2015 Br1091×HM1 | Chr5 | 37.192 | K3311 | MapViewer |
| 2016 Integ NG full map | CH5 | 49.945 | K3311 | MapViewer |
| 2016 Integ NG bin map | CH5 | 49.143 | K3311 | MapViewer |
Synonyms:
- MK005867
Sequence Coordinates:
DCARv2_Chr5:30390543..30400455-
View location in JBrowse:
Sequence:
CTGTAAAGCACAGTAGAGTAAGTAATGGCAGAGTAATRCATGAAGCAATC
ACTCTCGGGGTCACCATGTAA
Sequences:
>MK005867_K3311 ID=MK005867_K3311; Name=MK005867 K3311; organism=Daucus carota; type=genetic_marker
CTGTAAAGCACAGTAGAGTAAGTAATGGCAGAGTAATRCATGAAGCAATC
ACTCTCGGGGTCACCATGTAA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CTGTAAAGCACAGTAGAGTAAGTAATGGCAGAGTAAT
Three Prime Flanking Region:
CATGAAGCAATCACTCTCGGGGTCACCATGTAA
SNP:
A/G